Wall clock time and date at job start Mon Mar 30 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47120 * 300.00616 * 3 2 1 6 6 H 1.48501 * 109.46682 * 60.00630 * 3 2 1 7 7 C 1.38947 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99675 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00651 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99318 * 180.02562 * 10 9 7 13 13 S 1.81400 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 10 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99611 * 0.02562 * 9 7 2 24 24 H 1.08994 * 109.47717 * 59.99884 * 12 10 9 25 25 H 1.09001 * 109.46877 * 299.99129 * 12 10 9 26 26 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 29 29 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 30 30 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 32 32 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8629 -0.0011 13 16 2.4222 -6.2418 -0.0002 14 6 1.3749 -7.6586 -0.0003 15 6 1.9278 -8.9337 0.0009 16 6 1.1039 -10.0417 0.0003 17 6 -0.2701 -9.8839 -0.0009 18 6 -1.1659 -11.0957 -0.0009 19 8 -1.4501 -11.4779 1.3464 20 6 -0.8239 -8.6166 -0.0071 21 6 -0.0062 -7.5039 -0.0010 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 -0.0005 24 1 0.6172 -4.9205 -0.8913 25 1 0.6166 -4.9209 0.8887 26 1 3.0008 -9.0577 0.0014 27 1 1.5329 -11.0328 0.0008 28 1 -0.6658 -11.9172 -0.5139 29 1 -2.0972 -10.8591 -0.5155 30 1 -2.0235 -12.2528 1.4228 31 1 -1.8973 -8.4971 -0.0124 32 1 -0.4394 -6.5146 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160468668.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:18 Heat of formation + Delta-G solvation = -88.284119 kcal Electronic energy + Delta-G solvation = -16627.820433 eV Core-core repulsion = 13678.375149 eV Total energy + Delta-G solvation = -2949.445284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23796 -40.16358 -37.46494 -36.11425 -33.49280 -32.78793 -32.16327 -30.80377 -27.06270 -26.66605 -23.72318 -22.46527 -21.48111 -20.10412 -18.78824 -18.31523 -17.82202 -16.89020 -16.67760 -16.43475 -16.34404 -15.99358 -15.39366 -14.86444 -14.68482 -14.49488 -14.23307 -14.12534 -13.69948 -13.56678 -13.18541 -12.93205 -12.47827 -12.26627 -12.14431 -12.01243 -11.60731 -11.13531 -10.92716 -10.66018 -10.61471 -10.12421 -9.96756 -8.54291 -8.42007 -6.04182 0.12645 0.34818 0.39449 1.32935 1.41292 1.43070 1.55626 1.86641 2.26326 2.60325 3.01016 3.11553 3.62398 3.80954 3.97361 4.04409 4.09165 4.17154 4.28587 4.33558 4.42656 4.56476 4.68816 4.79363 5.05449 5.27242 5.30843 5.35677 5.57763 5.87590 5.92352 6.45262 6.96411 7.01220 7.38988 7.92836 8.62975 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.045019 B = 0.003330 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.813787 B = 8407.348725 C = 8938.726185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.557 5.557 10 C 0.450 3.550 11 O -0.618 6.618 12 C -0.117 4.117 13 S -0.078 6.078 14 C -0.101 4.101 15 C -0.116 4.116 16 C -0.082 4.082 17 C -0.115 4.115 18 C 0.121 3.879 19 O -0.592 6.592 20 C -0.084 4.084 21 C -0.152 4.152 22 H 0.281 0.719 23 H 0.400 0.600 24 H 0.125 0.875 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.400 0.600 31 H 0.145 0.855 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -20.736 -1.079 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.194 5.194 10 C 0.236 3.764 11 O -0.506 6.506 12 C -0.268 4.268 13 S 0.166 5.834 14 C -0.214 4.214 15 C -0.140 4.140 16 C -0.101 4.101 17 C -0.118 4.118 18 C 0.044 3.956 19 O -0.401 6.401 20 C -0.104 4.104 21 C -0.176 4.176 22 H 0.090 0.910 23 H 0.234 0.766 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.152 0.848 27 H 0.169 0.831 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.250 0.750 31 H 0.162 0.838 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.647 -19.839 -0.958 20.398 hybrid contribution -1.774 0.576 -0.106 1.868 sum -6.421 -19.263 -1.063 20.333 Atomic orbital electron populations 1.69668 1.06872 1.29616 1.49331 1.26091 0.96582 1.02503 0.95702 0.84832 0.78035 0.76751 0.78495 1.19753 1.19367 1.19400 1.19749 0.92858 0.83592 1.50494 0.90020 1.41793 1.09492 1.04282 1.63795 1.19729 0.87767 0.85120 0.83794 1.90539 1.15345 1.87439 1.57266 1.23544 1.01301 0.93612 1.08320 1.86269 1.10936 0.94449 1.91747 1.22275 0.97131 0.97699 1.04323 1.20930 1.00752 0.90272 1.02077 1.21241 0.92786 0.98930 0.97191 1.20032 0.94401 0.95044 1.02312 1.21012 0.97390 0.93489 0.83741 1.86530 1.73384 1.53241 1.26960 1.21224 1.00561 0.91421 0.97194 1.21411 0.91880 1.00437 1.03834 0.90982 0.76573 0.85659 0.85861 0.84767 0.83106 0.90732 0.91092 0.74984 0.83754 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.45 13.05 21.66 0.28 -48.17 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -28.54 5.29 -306.98 -1.62 -30.17 16 10 C 0.45 21.82 7.80 87.66 0.68 22.50 16 11 O -0.62 -35.06 15.44 -3.05 -0.05 -35.10 16 12 C -0.12 -4.19 4.82 71.24 0.34 -3.84 16 13 S -0.08 -2.81 21.06 -56.49 -1.19 -4.00 16 14 C -0.10 -2.95 6.11 22.62 0.14 -2.81 16 15 C -0.12 -2.94 9.79 22.41 0.22 -2.72 16 16 C -0.08 -1.69 9.69 22.25 0.22 -1.47 16 17 C -0.11 -2.31 5.51 -19.83 -0.11 -2.42 16 18 C 0.12 1.60 7.17 71.24 0.51 2.11 16 19 O -0.59 -9.03 13.64 -148.98 -2.03 -11.06 16 20 C -0.08 -1.84 9.69 22.25 0.22 -1.62 16 21 C -0.15 -3.93 9.36 22.41 0.21 -3.72 16 22 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 23 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 24 H 0.13 3.87 7.75 -2.39 -0.02 3.85 16 25 H 0.12 3.86 7.75 -2.39 -0.02 3.84 16 26 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 27 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 29 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 30 H 0.40 1.90 9.12 -74.06 -0.68 1.23 16 31 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.13 3.15 5.88 -2.91 -0.02 3.14 16 Total: -1.00 -71.18 298.69 0.88 -70.30 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.24 Total: 26.02 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.71 Total: -12.20 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.34 Total: -78.34 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -2.08 Total: -46.16 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -1.19 Total: -4.00 kcal Total: -71.18 0.88 -70.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160468668.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.985 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds