Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48498 * 109.46716 * 239.99495 * 3 2 1 5 5 H 1.48500 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47058 * 119.99752 * 3 2 1 7 7 C 1.37873 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99971 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99893 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40256 * 66.46223 * 9 7 2 11 11 O 1.42101 * 106.40487 * 293.53658 * 9 7 2 12 12 N 1.65607 * 107.21717 * 180.02562 * 9 7 2 13 13 C 1.46501 * 119.99723 * 64.99798 * 12 9 7 14 14 C 1.52584 * 109.22206 * 144.99912 * 13 12 9 15 15 C 1.53097 * 109.95633 * 190.99752 * 14 13 12 16 16 S 1.81750 * 108.84180 * 296.97701 * 15 14 13 17 17 O 1.42094 * 109.47308 * 169.25987 * 16 15 14 18 18 C 1.81755 * 102.21981 * 53.26532 * 16 15 14 19 19 C 1.52579 * 109.23068 * 266.23912 * 13 12 9 20 20 H 0.97001 * 120.00026 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00011 * 245.00241 * 12 9 7 22 22 H 1.08999 * 109.18819 * 25.62700 * 13 12 9 23 23 H 1.09004 * 109.38665 * 70.85467 * 14 13 12 24 24 H 1.08993 * 109.31267 * 311.09738 * 14 13 12 25 25 H 1.08997 * 109.57635 * 177.17117 * 15 14 13 26 26 H 1.08994 * 109.68210 * 56.84586 * 15 14 13 27 27 H 1.08993 * 109.57205 * 66.54310 * 18 16 15 28 28 H 1.08995 * 109.57540 * 186.92593 * 18 16 15 29 29 H 1.09004 * 109.38905 * 289.15500 * 19 13 12 30 30 H 1.08996 * 109.39049 * 48.85659 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4519 -2.7945 1.2520 12 7 2.2483 -3.9354 0.0030 13 6 3.1394 -4.1077 1.1530 14 6 3.4064 -5.5953 1.3632 15 6 4.1038 -5.8161 2.7081 16 16 5.7192 -4.9839 2.6752 17 8 6.2691 -4.9651 3.9853 18 6 5.2709 -3.2929 2.1821 19 6 4.4422 -3.3562 0.8964 20 1 -0.4850 0.8401 -0.0004 21 1 2.3172 -4.5332 -0.7578 22 1 2.6591 -3.7002 2.0426 23 1 4.0437 -5.9655 0.5600 24 1 2.4603 -6.1363 1.3530 25 1 4.2464 -6.8838 2.8746 26 1 3.4947 -5.3995 3.5102 27 1 4.6837 -2.8256 2.9725 28 1 6.1761 -2.7121 2.0049 29 1 5.0117 -3.8727 0.1237 30 1 4.2161 -2.3439 0.5615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164745380.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = -138.986002 kcal Electronic energy + Delta-G solvation = -17093.786641 eV Core-core repulsion = 14141.753614 eV Total energy + Delta-G solvation = -2952.033026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.64791 -35.60749 -35.21272 -33.99980 -33.17175 -31.93098 -31.44311 -26.22957 -25.62759 -23.14083 -20.72033 -19.06035 -17.72176 -17.27489 -16.44079 -16.00995 -15.18588 -15.04402 -14.90189 -14.27358 -14.21939 -13.84560 -13.53282 -12.94856 -12.73098 -12.30597 -12.05664 -11.73312 -11.44863 -11.44241 -11.24011 -11.09013 -10.78919 -10.62892 -10.34057 -10.26261 -10.18950 -9.67857 -9.27898 -9.03614 -8.61701 -8.23830 -6.74444 -5.37009 1.59517 2.27644 2.53893 3.04725 3.10004 3.14476 3.78458 4.01513 4.54894 4.61509 4.70948 4.92356 5.05103 5.18974 5.24600 5.44666 5.53849 5.74191 5.82878 5.85394 6.01832 6.09604 6.20333 6.39357 6.53027 6.80279 7.30674 7.85526 7.93283 8.84768 10.19943 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.007024 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.492991 B = 3985.249696 C = 4750.433303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.265 1.265 7 C -1.022 5.022 8 H 0.106 0.894 9 S 2.712 3.288 10 O -1.006 7.006 11 O -1.008 7.008 12 N -1.130 6.130 13 C 0.143 3.857 14 C -0.101 4.101 15 C -0.436 4.436 16 S 1.225 4.775 17 O -0.865 6.865 18 C -0.432 4.432 19 C -0.126 4.126 20 H 0.291 0.709 21 H 0.403 0.597 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 -9.134 -0.753 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.124 0.876 9 S 2.812 3.188 10 O -0.996 6.996 11 O -0.998 6.998 12 N -0.883 5.883 13 C 0.035 3.965 14 C -0.140 4.140 15 C -0.574 4.574 16 S 1.424 4.576 17 O -0.861 6.861 18 C -0.570 4.570 19 C -0.166 4.166 20 H 0.102 0.898 21 H 0.234 0.766 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.068 -9.448 -0.348 14.556 hybrid contribution -0.477 2.041 1.219 2.425 sum 10.591 -7.407 0.871 12.954 Atomic orbital electron populations 1.69888 1.06799 1.30866 1.39878 1.24735 0.94436 1.00788 0.88514 0.86237 0.79946 0.79863 0.79764 1.18761 1.20126 1.18914 1.30632 1.06020 1.11796 1.67086 0.87553 1.00483 0.72149 0.73331 0.72815 1.93378 1.73051 1.87622 1.45573 1.93362 1.72871 1.87517 1.46035 1.56035 1.54946 1.51073 1.26203 1.20647 0.90776 0.95023 0.90103 1.21446 1.01671 0.96272 0.94656 1.27545 1.16894 1.09953 1.03019 1.70225 0.90600 0.92179 1.04637 1.93082 1.67234 1.84047 1.41695 1.27525 1.07097 1.17788 1.04639 1.21929 0.95157 1.04408 0.95088 0.89807 0.76561 0.89272 0.89834 0.90127 0.86774 0.89145 0.89016 0.86675 0.89989 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.45 13.19 55.43 0.73 -23.72 16 2 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -1.02 -26.66 9.48 30.60 0.29 -26.37 16 8 H 0.11 2.44 5.38 -52.49 -0.28 2.16 16 9 S 2.71 68.59 5.00 -107.50 -0.54 68.05 16 10 O -1.01 -28.45 18.02 -57.17 -1.03 -29.48 16 11 O -1.01 -28.73 17.34 -57.17 -0.99 -29.72 16 12 N -1.13 -19.95 5.45 -5.26 -0.03 -19.98 16 13 C 0.14 2.15 2.52 -68.36 -0.17 1.98 16 14 C -0.10 -1.08 5.26 -26.89 -0.14 -1.22 16 15 C -0.44 -4.53 6.44 37.21 0.24 -4.29 16 16 S 1.22 12.51 13.75 -107.50 -1.48 11.03 16 17 O -0.87 -14.55 18.14 -35.23 -0.64 -15.19 16 18 C -0.43 -5.13 6.44 37.21 0.24 -4.89 16 19 C -0.13 -1.61 5.34 -26.90 -0.14 -1.76 16 20 H 0.29 7.62 8.31 -40.82 -0.34 7.29 16 21 H 0.40 5.80 8.83 -34.48 -0.30 5.49 16 22 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 23 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 30 H 0.10 1.50 5.38 -51.93 -0.28 1.22 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -39.52 274.81 -7.97 -47.50 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.34 Total: 5.34 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 0.21 Total: -33.02 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.70 Total: -43.69 kcal Atomic # 8 Polarization: -71.73 SS G_CDS: -2.66 Total: -74.39 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 81.10 SS G_CDS: -2.02 Total: 79.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -39.52 -7.97 -47.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164745380.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.488 kcal (2) G-P(sol) polarization free energy of solvation -39.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds