Wall clock time and date at job start Mon Mar 30 2020 04:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48498 * 109.46716 * 239.99495 * 3 2 1 5 5 H 1.48500 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47058 * 119.99752 * 3 2 1 7 7 C 1.37873 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99971 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99893 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40256 * 66.46223 * 9 7 2 11 11 O 1.42101 * 106.40487 * 293.53658 * 9 7 2 12 12 N 1.65607 * 107.21717 * 180.02562 * 9 7 2 13 13 C 1.46501 * 119.99723 * 64.99798 * 12 9 7 14 14 C 1.52584 * 109.22206 * 144.99912 * 13 12 9 15 15 C 1.53097 * 109.95633 * 190.99752 * 14 13 12 16 16 S 1.81750 * 108.84180 * 296.97701 * 15 14 13 17 17 O 1.42094 * 109.47308 * 169.25987 * 16 15 14 18 18 C 1.81755 * 102.21981 * 53.26532 * 16 15 14 19 19 C 1.52579 * 109.23068 * 266.23912 * 13 12 9 20 20 H 0.97001 * 120.00026 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00011 * 245.00241 * 12 9 7 22 22 H 1.08999 * 109.18819 * 25.62700 * 13 12 9 23 23 H 1.09004 * 109.38665 * 70.85467 * 14 13 12 24 24 H 1.08993 * 109.31267 * 311.09738 * 14 13 12 25 25 H 1.08997 * 109.57635 * 177.17117 * 15 14 13 26 26 H 1.08994 * 109.68210 * 56.84586 * 15 14 13 27 27 H 1.08993 * 109.57205 * 66.54310 * 18 16 15 28 28 H 1.08995 * 109.57540 * 186.92593 * 18 16 15 29 29 H 1.09004 * 109.38905 * 289.15500 * 19 13 12 30 30 H 1.08996 * 109.39049 * 48.85659 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4519 -2.7945 1.2520 12 7 2.2483 -3.9354 0.0030 13 6 3.1394 -4.1077 1.1530 14 6 3.4064 -5.5953 1.3632 15 6 4.1038 -5.8161 2.7081 16 16 5.7192 -4.9839 2.6752 17 8 6.2691 -4.9651 3.9853 18 6 5.2709 -3.2929 2.1821 19 6 4.4422 -3.3562 0.8964 20 1 -0.4850 0.8401 -0.0004 21 1 2.3172 -4.5332 -0.7578 22 1 2.6591 -3.7002 2.0426 23 1 4.0437 -5.9655 0.5600 24 1 2.4603 -6.1363 1.3530 25 1 4.2464 -6.8838 2.8746 26 1 3.4947 -5.3995 3.5102 27 1 4.6837 -2.8256 2.9725 28 1 6.1761 -2.7121 2.0049 29 1 5.0117 -3.8727 0.1237 30 1 4.2161 -2.3439 0.5615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164745380.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:59 Heat of formation + Delta-G solvation = -174.531053 kcal Electronic energy + Delta-G solvation = -17095.327990 eV Core-core repulsion = 14141.753614 eV Total energy + Delta-G solvation = -2953.574375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.81035 -37.34249 -36.77270 -36.13498 -35.19919 -33.26050 -32.38348 -28.27124 -26.76766 -24.09674 -21.82369 -20.99811 -19.40086 -18.57383 -18.04072 -17.43251 -16.90633 -16.29716 -15.99692 -15.95198 -15.48165 -15.30256 -14.98483 -14.19124 -13.99459 -13.76780 -13.47146 -13.24170 -13.00481 -12.69069 -12.57097 -12.47966 -12.44991 -12.36915 -12.29301 -12.09265 -11.52687 -11.23360 -11.04401 -10.62813 -10.17130 -9.21916 -8.75061 -7.46426 0.37174 0.72636 1.33503 1.34923 1.47165 1.65647 2.19372 2.59082 2.80910 3.01972 3.65961 3.79758 3.93638 4.09975 4.12180 4.32778 4.33297 4.50280 4.63180 4.80242 4.94972 4.99397 5.13816 5.18144 5.28140 5.47447 5.50395 5.98956 6.53775 6.80807 8.21146 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.007024 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.492991 B = 3985.249696 C = 4750.433303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.985 3.015 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.254 1.254 7 C -1.037 5.037 8 H 0.133 0.867 9 S 2.716 3.284 10 O -1.044 7.044 11 O -1.052 7.052 12 N -1.109 6.109 13 C 0.129 3.871 14 C -0.096 4.096 15 C -0.439 4.439 16 S 1.310 4.690 17 O -0.929 6.929 18 C -0.440 4.440 19 C -0.127 4.127 20 H 0.297 0.703 21 H 0.423 0.577 22 H 0.050 0.950 23 H 0.138 0.862 24 H 0.077 0.923 25 H 0.146 0.854 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.093 -9.914 -1.750 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.803 3.197 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.178 1.178 7 C -1.171 5.171 8 H 0.151 0.849 9 S 2.817 3.183 10 O -1.035 7.035 11 O -1.042 7.042 12 N -0.868 5.868 13 C 0.022 3.978 14 C -0.136 4.136 15 C -0.578 4.578 16 S 1.510 4.490 17 O -0.924 6.924 18 C -0.578 4.578 19 C -0.166 4.166 20 H 0.107 0.893 21 H 0.258 0.742 22 H 0.068 0.932 23 H 0.156 0.844 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.835 -10.250 -1.356 17.272 hybrid contribution -1.354 2.176 1.544 2.992 sum 12.481 -8.074 0.188 14.866 Atomic orbital electron populations 1.70003 1.08867 1.32227 1.41819 1.25991 0.95260 1.05379 0.87681 0.85235 0.78835 0.74814 0.80805 1.16700 1.19354 1.17820 1.31064 1.07611 1.12221 1.66163 0.84920 0.99944 0.72795 0.74287 0.71309 1.93314 1.74954 1.88458 1.46726 1.93304 1.74862 1.88385 1.47659 1.55263 1.54139 1.49527 1.27920 1.21013 0.90838 0.98562 0.87430 1.21500 1.02946 0.92689 0.96476 1.27606 1.16211 1.11897 1.02052 1.69446 0.88803 0.89477 1.01290 1.92956 1.69767 1.84755 1.44967 1.27628 1.07415 1.19411 1.03386 1.21945 0.94581 1.03219 0.96877 0.89308 0.74193 0.93174 0.84414 0.90400 0.83588 0.91862 0.92101 0.84462 0.84655 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.39 13.19 21.45 0.28 -53.11 16 2 C 0.07 3.79 5.46 84.65 0.46 4.25 16 3 Si 0.98 40.48 29.54 68.60 2.03 42.51 16 4 H -0.24 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -1.04 -54.39 9.48 67.73 0.64 -53.74 16 8 H 0.13 5.99 5.38 -2.91 -0.02 5.98 16 9 S 2.72 140.29 5.00 -56.49 -0.28 140.01 16 10 O -1.04 -60.48 18.02 -128.00 -2.31 -62.79 16 11 O -1.05 -62.57 17.34 -128.00 -2.22 -64.78 16 12 N -1.11 -38.02 5.45 -170.55 -0.93 -38.95 16 13 C 0.13 3.70 2.52 44.71 0.11 3.81 16 14 C -0.10 -1.74 5.26 30.49 0.16 -1.58 16 15 C -0.44 -7.96 6.44 72.01 0.46 -7.50 16 16 S 1.31 23.08 13.75 -56.49 -0.78 22.31 16 17 O -0.93 -29.88 18.14 -148.98 -2.70 -32.59 16 18 C -0.44 -9.59 6.44 72.01 0.46 -9.13 16 19 C -0.13 -2.90 5.34 30.49 0.16 -2.74 16 20 H 0.30 16.00 8.31 -92.71 -0.77 15.23 16 21 H 0.42 11.20 8.83 -96.75 -0.85 10.34 16 22 H 0.05 1.82 7.42 -2.39 -0.02 1.80 16 23 H 0.14 1.05 8.06 -2.38 -0.02 1.03 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.14 1.64 8.06 -2.39 -0.02 1.63 16 30 H 0.07 2.05 5.38 -2.39 -0.01 2.03 16 Total: -1.00 -90.61 274.81 -4.13 -94.74 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.31 Total: 19.28 kcal Atomic # 6 Polarization: -69.09 SS G_CDS: 2.47 Total: -66.63 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -0.65 Total: -92.05 kcal Atomic # 8 Polarization: -152.93 SS G_CDS: -7.23 Total: -160.16 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 163.37 SS G_CDS: -1.06 Total: 162.31 kcal Total: -90.61 -4.13 -94.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164745380.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.793 kcal (2) G-P(sol) polarization free energy of solvation -90.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds