Wall clock time and date at job start Mon Mar 30 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70983 * 125.40381 * 2 1 4 4 C 1.75964 * 90.68531 * 180.19806 * 3 2 1 5 5 N 1.38174 * 125.26433 * 179.79197 * 4 3 2 6 6 C 1.36915 * 119.99714 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00446 * 17.54710 * 6 5 4 8 8 C 1.38758 * 119.99447 * 197.54237 * 6 5 4 9 9 N 1.31594 * 120.00100 * 21.83838 * 8 6 5 10 10 Si 1.86807 * 119.99897 * 201.82981 * 8 6 5 11 11 H 1.48497 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.46687 * 120.00396 * 10 8 6 13 13 H 1.48504 * 109.46963 * 240.00217 * 10 8 6 14 14 C 1.46498 * 119.99757 * 359.97438 * 5 4 3 15 15 C 1.47194 * 109.47342 * 84.19572 * 14 5 4 16 16 N 5.60941 * 134.14303 * 37.13287 * 2 1 3 17 17 N 1.29715 * 109.47019 * 359.80838 * 4 3 2 18 18 C 1.33502 * 115.66316 * 359.97438 * 17 4 3 19 19 C 1.47085 * 122.51136 * 180.02562 * 18 17 4 20 20 O 1.21560 * 120.00305 * 180.02562 * 19 18 17 21 21 O 1.34818 * 119.99563 * 0.02701 * 19 18 17 22 22 H 1.09002 * 109.46685 * 270.15524 * 1 2 3 23 23 H 1.09002 * 109.46856 * 30.14762 * 1 2 3 24 24 H 1.08993 * 109.47727 * 150.15597 * 1 2 3 25 25 H 0.97004 * 119.99736 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.46842 * 204.19930 * 14 5 4 27 27 H 1.09002 * 109.47053 * 324.19211 * 14 5 4 28 28 H 0.96698 * 116.99808 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4976 1.3937 0.0000 4 6 3.9439 0.3915 -0.0061 5 7 5.2422 0.8645 -0.0129 6 6 6.2912 -0.0154 -0.0177 7 1 6.1306 -1.0458 -0.2983 8 6 7.5608 0.4171 0.3379 9 7 7.7057 1.4996 1.0720 10 14 9.0645 -0.5377 -0.2252 11 1 8.6344 -1.7072 -1.0329 12 1 9.9290 0.3428 -1.0513 13 1 9.8254 -1.0072 0.9605 14 6 5.4960 2.3073 -0.0161 15 6 5.4494 2.8168 1.3640 16 7 5.4137 3.2091 2.4300 17 7 3.6028 -0.8600 -0.0035 18 6 2.2898 -1.1014 0.0034 19 6 1.7365 -2.4642 0.0076 20 8 0.5325 -2.6314 0.0135 21 8 2.5648 -3.5279 0.0051 22 1 -0.3633 0.0028 1.0277 23 1 -0.3633 0.8887 -0.5161 24 1 -0.3634 -0.8913 -0.5114 25 1 8.5933 1.8016 1.3208 26 1 6.4802 2.5020 -0.4423 27 1 4.7353 2.8087 -0.6145 28 1 2.1547 -4.4036 0.0085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167710822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:22 Heat of formation + Delta-G solvation = -2.856084 kcal Electronic energy + Delta-G solvation = -17582.755245 eV Core-core repulsion = 14533.474054 eV Total energy + Delta-G solvation = -3049.281190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99087 -38.43825 -36.98214 -35.72229 -34.89446 -32.54824 -31.22833 -28.25157 -26.91318 -24.80158 -23.77345 -21.35196 -19.53335 -18.67711 -17.50844 -16.72804 -16.60980 -15.99521 -15.43227 -15.38569 -14.60358 -14.17063 -13.72564 -13.28401 -13.01356 -12.77013 -12.42438 -12.22311 -12.10709 -11.84473 -11.58652 -11.34406 -11.17226 -11.14019 -10.81739 -10.73576 -10.52485 -10.06712 -9.92552 -8.95951 -8.67036 -8.50399 -7.25830 -6.84380 -4.13049 1.26930 1.89476 2.39823 2.53156 3.01659 3.06185 3.12372 3.28497 3.69094 3.76802 3.91478 3.94563 4.40771 4.59012 4.94551 5.37658 5.61228 5.73384 5.73961 6.02770 6.13838 6.37256 6.43655 6.66599 6.84787 7.13603 7.19819 8.02402 8.24935 8.53614 8.59795 8.75293 9.07439 10.17270 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.007393 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.508931 B = 3786.620909 C = 4902.359104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.264 4.264 3 S 0.044 5.956 4 C 0.297 3.703 5 N -0.378 5.378 6 C -0.283 4.283 7 H 0.122 0.878 8 C 0.029 3.971 9 N -0.861 5.861 10 Si 0.940 3.060 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.279 1.279 14 C 0.231 3.769 15 C 0.238 3.762 16 N -0.454 5.454 17 N -0.530 5.530 18 C 0.083 3.917 19 C 0.566 3.434 20 O -0.522 6.522 21 O -0.493 6.493 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.281 0.719 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -0.947 -5.609 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.394 4.394 3 S 0.295 5.705 4 C -0.072 4.072 5 N -0.076 5.076 6 C -0.415 4.415 7 H 0.140 0.860 8 C -0.179 4.179 9 N -0.497 5.497 10 Si 0.765 3.235 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.205 1.205 14 C 0.104 3.896 15 C -0.081 4.081 16 N -0.133 5.133 17 N -0.260 5.260 18 C -0.053 4.053 19 C 0.409 3.591 20 O -0.412 6.412 21 O -0.302 6.302 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.158 0.842 27 H 0.106 0.894 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.648 0.913 -3.949 6.167 hybrid contribution 0.360 -1.989 -0.376 2.056 sum -4.288 -1.076 -4.324 6.184 Atomic orbital electron populations 1.20179 0.87348 1.02747 1.01968 1.24081 1.00984 0.94628 1.19695 1.83363 0.98890 1.10535 1.77735 1.24327 0.89418 0.89897 1.03522 1.42164 0.99686 1.03907 1.61829 1.20170 0.83842 0.95161 1.42325 0.86012 1.25512 1.00010 0.97587 0.94772 1.69963 1.25438 1.24286 1.29981 0.85621 0.79487 0.79571 0.78816 1.18557 1.20063 1.20468 1.18860 1.05021 0.79618 0.86147 1.29061 0.90922 0.92795 0.95335 1.80930 1.11337 1.09633 1.11399 1.67018 1.12693 1.15571 1.30708 1.18476 0.88652 0.90257 1.07883 1.20010 0.83395 0.84571 0.71167 1.90806 1.15930 1.86513 1.47962 1.84816 1.42764 1.17407 1.85223 0.91994 0.92621 0.89360 0.90868 0.84238 0.89366 0.74126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 9.60 36.01 0.35 -0.65 15 2 C -0.26 -5.00 6.38 -35.42 -0.23 -5.22 15 3 S 0.04 0.80 21.85 -107.50 -2.35 -1.55 15 4 C 0.30 6.49 7.79 -88.08 -0.69 5.80 15 5 N -0.38 -8.29 2.68 -118.88 -0.32 -8.60 15 6 C -0.28 -6.60 9.44 -15.09 -0.14 -6.75 15 7 H 0.12 2.98 7.57 -52.49 -0.40 2.58 15 8 C 0.03 0.64 4.85 -17.46 -0.08 0.56 15 9 N -0.86 -19.89 9.50 55.49 0.53 -19.36 15 10 Si 0.94 17.87 29.61 -169.99 -5.03 12.83 15 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 12 H -0.28 -5.08 7.11 56.52 0.40 -4.68 15 13 H -0.28 -5.50 7.11 56.52 0.40 -5.09 15 14 C 0.23 4.35 5.04 -6.83 -0.03 4.31 15 15 C 0.24 5.08 13.63 -20.75 -0.28 4.80 15 16 N -0.45 -10.51 18.54 42.17 0.78 -9.73 15 17 N -0.53 -12.14 9.90 -10.66 -0.11 -12.25 15 18 C 0.08 1.71 6.66 -84.66 -0.56 1.15 15 19 C 0.57 10.54 8.31 34.32 0.29 10.83 15 20 O -0.52 -9.67 14.76 -19.31 -0.29 -9.96 15 21 O -0.49 -8.00 13.35 -40.82 -0.54 -8.55 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.09 1.43 5.92 -51.93 -0.31 1.12 15 25 H 0.28 6.22 8.31 -40.82 -0.34 5.88 15 26 H 0.14 2.57 6.46 -51.93 -0.34 2.23 15 27 H 0.09 1.34 7.33 -51.93 -0.38 0.96 15 28 H 0.40 4.01 9.11 45.56 0.42 4.43 15 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -28.95 274.18 -5.57 -34.52 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -0.99 Total: 3.68 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -1.39 Total: 14.82 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.88 Total: -49.94 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.83 Total: -18.51 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.35 Total: -1.55 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.95 -5.57 -34.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167710822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.663 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds