Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70983 * 125.40381 * 2 1 4 4 C 1.75964 * 90.68531 * 180.19806 * 3 2 1 5 5 N 1.38174 * 125.26433 * 179.79197 * 4 3 2 6 6 C 1.36915 * 119.99714 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00446 * 17.54710 * 6 5 4 8 8 C 1.38758 * 119.99447 * 197.54237 * 6 5 4 9 9 N 1.31594 * 120.00100 * 21.83838 * 8 6 5 10 10 Si 1.86807 * 119.99897 * 201.82981 * 8 6 5 11 11 H 1.48497 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.46687 * 120.00396 * 10 8 6 13 13 H 1.48504 * 109.46963 * 240.00217 * 10 8 6 14 14 C 1.46498 * 119.99757 * 359.97438 * 5 4 3 15 15 C 1.47194 * 109.47342 * 84.19572 * 14 5 4 16 16 N 5.60941 * 134.14303 * 37.13287 * 2 1 3 17 17 N 1.29715 * 109.47019 * 359.80838 * 4 3 2 18 18 C 1.33502 * 115.66316 * 359.97438 * 17 4 3 19 19 C 1.47085 * 122.51136 * 180.02562 * 18 17 4 20 20 O 1.21560 * 120.00305 * 180.02562 * 19 18 17 21 21 O 1.34818 * 119.99563 * 0.02701 * 19 18 17 22 22 H 1.09002 * 109.46685 * 270.15524 * 1 2 3 23 23 H 1.09002 * 109.46856 * 30.14762 * 1 2 3 24 24 H 1.08993 * 109.47727 * 150.15597 * 1 2 3 25 25 H 0.97004 * 119.99736 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.46842 * 204.19930 * 14 5 4 27 27 H 1.09002 * 109.47053 * 324.19211 * 14 5 4 28 28 H 0.96698 * 116.99808 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4976 1.3937 0.0000 4 6 3.9439 0.3915 -0.0061 5 7 5.2422 0.8645 -0.0129 6 6 6.2912 -0.0154 -0.0177 7 1 6.1306 -1.0458 -0.2983 8 6 7.5608 0.4171 0.3379 9 7 7.7057 1.4996 1.0720 10 14 9.0645 -0.5377 -0.2252 11 1 8.6344 -1.7072 -1.0329 12 1 9.9290 0.3428 -1.0513 13 1 9.8254 -1.0072 0.9605 14 6 5.4960 2.3073 -0.0161 15 6 5.4494 2.8168 1.3640 16 7 5.4137 3.2091 2.4300 17 7 3.6028 -0.8600 -0.0035 18 6 2.2898 -1.1014 0.0034 19 6 1.7365 -2.4642 0.0076 20 8 0.5325 -2.6314 0.0135 21 8 2.5648 -3.5279 0.0051 22 1 -0.3633 0.0028 1.0277 23 1 -0.3633 0.8887 -0.5161 24 1 -0.3634 -0.8913 -0.5114 25 1 8.5933 1.8016 1.3208 26 1 6.4802 2.5020 -0.4423 27 1 4.7353 2.8087 -0.6145 28 1 2.1547 -4.4036 0.0085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167710822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = -21.070557 kcal Electronic energy + Delta-G solvation = -17583.545084 eV Core-core repulsion = 14533.474054 eV Total energy + Delta-G solvation = -3050.071029 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43857 -39.99083 -38.55213 -37.09651 -36.58165 -34.17024 -32.72430 -29.77117 -28.46726 -26.40163 -25.22105 -22.91344 -21.04001 -20.24999 -18.98096 -18.31082 -18.12164 -17.58468 -16.92408 -16.81886 -16.18397 -15.73317 -15.25246 -14.84666 -14.41010 -14.23953 -13.88865 -13.72464 -13.54335 -13.45101 -13.21974 -12.91133 -12.66396 -12.52594 -12.45706 -12.28770 -12.03447 -11.64448 -11.33475 -10.59041 -10.28216 -10.04010 -8.86416 -8.49150 -5.85636 -0.23923 0.30864 0.84928 0.99518 1.50430 1.51205 1.61134 1.73172 2.13528 2.32895 2.33896 2.37808 2.83488 2.93554 3.40169 3.90943 4.19315 4.31628 4.42603 4.67330 4.79443 4.98912 5.06931 5.25917 5.45754 5.55466 5.60056 6.36541 6.85214 6.88529 7.02207 7.17131 7.46127 8.51463 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.007393 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.508931 B = 3786.620909 C = 4902.359104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.254 4.254 3 S 0.106 5.894 4 C 0.277 3.723 5 N -0.397 5.397 6 C -0.305 4.305 7 H 0.100 0.900 8 C 0.003 3.997 9 N -0.886 5.886 10 Si 0.997 3.003 11 H -0.266 1.266 12 H -0.263 1.263 13 H -0.289 1.289 14 C 0.233 3.767 15 C 0.251 3.749 16 N -0.493 5.493 17 N -0.561 5.561 18 C 0.045 3.955 19 C 0.568 3.432 20 O -0.525 6.525 21 O -0.498 6.498 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.280 0.720 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -0.663 -6.399 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.383 4.383 3 S 0.358 5.642 4 C -0.092 4.092 5 N -0.097 5.097 6 C -0.436 4.436 7 H 0.118 0.882 8 C -0.201 4.201 9 N -0.523 5.523 10 Si 0.820 3.180 11 H -0.190 1.190 12 H -0.187 1.187 13 H -0.216 1.216 14 C 0.106 3.894 15 C -0.067 4.067 16 N -0.173 5.173 17 N -0.291 5.291 18 C -0.088 4.088 19 C 0.411 3.589 20 O -0.416 6.416 21 O -0.310 6.310 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.958 1.163 -4.752 7.710 hybrid contribution 0.489 -2.137 -0.129 2.196 sum -5.469 -0.974 -4.881 7.395 Atomic orbital electron populations 1.20308 0.84872 1.04031 1.03011 1.24778 1.02832 0.94650 1.16040 1.83102 0.96192 1.08731 1.76167 1.24693 0.90679 0.90773 1.03042 1.42216 0.99439 1.04583 1.63433 1.19989 0.84993 0.94862 1.43800 0.88214 1.26039 1.01399 0.98250 0.94428 1.70021 1.25639 1.25509 1.31121 0.84801 0.76835 0.78466 0.77868 1.19040 1.18748 1.21566 1.19132 1.06599 0.78545 0.85146 1.29619 0.89675 0.91736 0.95706 1.80922 1.12828 1.11020 1.12562 1.67017 1.14210 1.16877 1.30997 1.18870 0.88322 0.92023 1.09608 1.19746 0.83348 0.84578 0.71262 1.90797 1.15806 1.86657 1.48368 1.84753 1.42919 1.18630 1.84688 0.90883 0.89887 0.89543 0.90974 0.83922 0.85542 0.71125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.78 9.60 71.24 0.68 -1.10 15 2 C -0.25 -8.98 6.38 24.97 0.16 -8.82 15 3 S 0.11 3.63 21.85 -56.49 -1.23 2.40 15 4 C 0.28 11.90 7.79 179.46 1.40 13.29 15 5 N -0.40 -17.29 2.68 -530.03 -1.42 -18.71 15 6 C -0.30 -14.43 9.44 84.02 0.79 -13.64 15 7 H 0.10 5.05 7.57 -2.91 -0.02 5.03 15 8 C 0.00 0.15 4.85 84.85 0.41 0.57 15 9 N -0.89 -41.12 9.50 21.64 0.21 -40.92 15 10 Si 1.00 36.95 29.61 68.60 2.03 38.98 15 11 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 12 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 13 H -0.29 -11.12 7.11 99.48 0.71 -10.41 15 14 C 0.23 8.53 5.04 84.57 0.43 8.96 15 15 C 0.25 10.57 13.63 89.44 1.22 11.79 15 16 N -0.49 -22.75 18.54 20.01 0.37 -22.38 15 17 N -0.56 -25.53 9.90 -187.65 -1.86 -27.39 15 18 C 0.05 1.83 6.66 40.49 0.27 2.10 15 19 C 0.57 20.44 8.31 70.14 0.58 21.02 15 20 O -0.52 -18.49 14.76 19.64 0.29 -18.20 15 21 O -0.50 -15.60 13.35 -57.31 -0.76 -16.36 15 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.08 1.89 8.14 -2.39 -0.02 1.88 15 24 H 0.09 2.54 5.92 -2.39 -0.01 2.53 15 25 H 0.28 12.47 8.31 -92.71 -0.77 11.70 15 26 H 0.14 5.17 6.46 -2.39 -0.02 5.15 15 27 H 0.13 3.55 7.33 -2.39 -0.02 3.53 15 28 H 0.43 7.82 9.11 -74.06 -0.67 7.15 15 Total: -1.00 -61.68 274.18 4.13 -57.55 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.57 Total: 10.84 kcal Atomic # 6 Polarization: 28.23 SS G_CDS: 5.94 Total: 34.17 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -2.70 Total: -109.39 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.47 Total: -34.56 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.23 Total: 2.40 kcal Total: -61.68 4.13 -57.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167710822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.482 kcal (2) G-P(sol) polarization free energy of solvation -61.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds