Wall clock time and date at job start Mon Mar 30 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34818 * 117.00421 * 2 1 4 4 O 1.21565 * 119.99549 * 0.02562 * 3 2 1 5 5 C 1.47069 * 119.99954 * 180.02562 * 3 2 1 6 6 C 1.35121 * 122.50736 * 180.02562 * 5 3 2 7 7 S 1.70978 * 109.19770 * 179.97438 * 6 5 3 8 8 C 1.75960 * 90.68676 * 359.97438 * 7 6 5 9 9 N 1.38165 * 125.26455 * 180.02562 * 8 7 6 10 10 C 1.36929 * 119.99825 * 0.02562 * 9 8 7 11 11 H 1.07991 * 120.00060 * 341.57361 * 10 9 8 12 12 C 1.38762 * 119.99601 * 161.57097 * 10 9 8 13 13 N 1.31591 * 120.00082 * 337.91586 * 12 10 9 14 14 Si 1.86797 * 119.99574 * 157.91294 * 12 10 9 15 15 H 1.48507 * 109.47154 * 60.00159 * 14 12 10 16 16 H 1.48502 * 109.47161 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47424 * 300.00398 * 14 12 10 18 18 C 1.46495 * 120.00197 * 180.29598 * 9 8 7 19 19 C 1.47196 * 109.47231 * 275.64220 * 18 9 8 20 20 N 5.64036 * 139.20098 * 138.60261 * 2 1 3 21 21 N 1.29711 * 109.47427 * 0.26035 * 8 7 6 22 22 H 1.09005 * 109.46757 * 299.99795 * 1 2 3 23 23 H 1.08999 * 109.46780 * 59.99486 * 1 2 3 24 24 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08001 * 125.40133 * 359.97082 * 6 5 3 26 26 H 0.97005 * 119.99680 * 180.02562 * 13 12 10 27 27 H 1.08997 * 109.47361 * 35.64239 * 18 9 8 28 28 H 1.08998 * 109.47367 * 155.64100 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4021 2.2207 0.0005 5 6 3.5328 1.2780 -0.0006 6 6 4.1984 2.4539 -0.0001 7 16 5.8806 2.1478 -0.0003 8 6 5.5863 0.4130 -0.0002 9 7 6.5651 -0.5622 0.0002 10 6 7.8871 -0.2052 0.0011 11 1 8.1773 0.7922 -0.2941 12 6 8.8538 -1.1252 0.3814 13 7 8.5241 -2.1527 1.1345 14 14 10.6231 -0.9050 -0.1757 15 1 11.1432 0.3913 0.3288 16 1 11.4528 -2.0133 0.3613 17 1 10.6800 -0.9173 -1.6595 18 6 6.1887 -1.9779 -0.0064 19 6 5.9253 -2.4220 1.3721 20 7 5.7218 -2.7646 2.4371 21 7 4.3083 0.1912 -0.0056 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.7405 3.4321 0.0003 26 1 9.2000 -2.7956 1.4007 27 1 5.2906 -2.1123 -0.6093 28 1 7.0017 -2.5681 -0.4291 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167710942.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:22 Heat of formation + Delta-G solvation = -11.214243 kcal Electronic energy + Delta-G solvation = -17454.204086 eV Core-core repulsion = 14404.560459 eV Total energy + Delta-G solvation = -3049.643627 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54635 -40.10949 -38.43770 -37.41973 -36.52741 -34.04201 -30.80411 -29.60992 -28.94309 -26.89207 -25.52107 -22.61676 -20.90764 -20.50234 -18.85538 -18.55876 -17.99533 -17.43183 -17.38283 -17.02593 -16.31211 -15.72928 -15.36554 -14.86183 -14.54993 -14.30442 -14.02622 -13.84595 -13.51726 -13.21391 -12.98278 -12.92609 -12.71168 -12.43316 -12.20156 -12.06622 -11.79840 -11.77297 -11.67163 -10.67726 -10.40773 -10.09711 -8.89899 -8.51439 -5.94849 -0.20528 0.42832 0.96842 0.98658 1.51738 1.58097 1.64067 1.87028 1.97853 2.25171 2.31760 2.35982 2.88593 2.92599 3.55525 3.65884 4.29557 4.35114 4.36143 4.56794 4.59447 4.70524 4.73799 4.94321 5.23780 5.29480 5.71094 6.24502 6.55847 6.88491 6.98257 7.02907 7.44754 8.48073 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.026314 B = 0.006256 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.819894 B = 4474.881538 C = 5314.852562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.549 3.451 4 O -0.527 6.527 5 C 0.060 3.940 6 C -0.299 4.299 7 S 0.144 5.856 8 C 0.276 3.724 9 N -0.390 5.390 10 C -0.339 4.339 11 H 0.117 0.883 12 C 0.012 3.988 13 N -0.876 5.876 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.255 1.255 18 C 0.245 3.755 19 C 0.263 3.737 20 N -0.511 5.511 21 N -0.573 5.573 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.130 0.870 25 H 0.188 0.812 26 H 0.282 0.718 27 H 0.117 0.883 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 3.207 -6.455 8.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.392 3.608 4 O -0.418 6.418 5 C -0.075 4.075 6 C -0.447 4.447 7 S 0.397 5.603 8 C -0.093 4.093 9 N -0.089 5.089 10 C -0.468 4.468 11 H 0.134 0.866 12 C -0.195 4.195 13 N -0.510 5.510 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.179 1.179 18 C 0.116 3.884 19 C -0.055 4.055 20 N -0.191 5.191 21 N -0.305 5.305 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.148 0.852 25 H 0.205 0.795 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.397 2.714 -4.796 6.473 hybrid contribution -0.343 0.048 -0.146 0.376 sum -3.740 2.762 -4.942 6.785 Atomic orbital electron populations 1.23627 0.74430 1.05767 1.02836 1.86727 1.25106 1.31510 1.83259 1.20229 0.87376 0.81530 0.71629 1.90787 1.66343 1.36546 1.48110 1.18766 0.91316 0.88772 1.08655 1.25768 0.98353 1.02578 1.18021 1.83366 1.02029 1.00699 1.74231 1.24688 0.89459 0.92742 1.02418 1.42114 1.02656 1.01131 1.63038 1.19991 0.78749 1.02251 1.45796 0.86604 1.26119 1.04396 0.95412 0.93554 1.70062 1.37668 1.14498 1.28805 0.84878 0.75444 0.78094 0.79495 1.19284 1.21082 1.17934 1.18889 1.02994 0.81759 0.84731 1.29694 0.88382 0.91756 0.95644 1.80903 1.14764 1.10454 1.12990 1.67061 1.00896 1.29994 1.32570 0.91771 0.91159 0.85195 0.79484 0.90762 0.86545 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.81 15 2 O -0.35 -12.13 10.48 -57.30 -0.60 -12.73 15 3 C 0.55 20.81 7.93 70.14 0.56 21.37 15 4 O -0.53 -20.22 16.45 19.63 0.32 -19.90 15 5 C 0.06 2.40 6.66 40.49 0.27 2.67 15 6 C -0.30 -10.78 10.56 67.10 0.71 -10.07 15 7 S 0.14 5.16 21.83 -56.49 -1.23 3.93 15 8 C 0.28 11.65 7.80 179.47 1.40 13.05 15 9 N -0.39 -16.70 2.68 -530.05 -1.42 -18.12 15 10 C -0.34 -14.42 9.31 84.02 0.78 -13.64 15 11 H 0.12 4.67 7.04 -2.92 -0.02 4.65 15 12 C 0.01 0.51 4.83 84.85 0.41 0.92 15 13 N -0.88 -39.75 9.56 21.64 0.21 -39.54 15 14 Si 1.00 33.51 29.61 68.60 2.03 35.54 15 15 H -0.27 -8.96 7.11 99.48 0.71 -8.26 15 16 H -0.29 -9.79 7.11 99.48 0.71 -9.08 15 17 H -0.26 -8.10 7.11 99.48 0.71 -7.39 15 18 C 0.25 9.78 5.20 84.57 0.44 10.22 15 19 C 0.26 12.07 13.58 89.43 1.21 13.28 15 20 N -0.51 -25.43 18.55 20.02 0.37 -25.06 15 21 N -0.57 -24.61 9.94 -187.66 -1.87 -26.48 15 22 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.13 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.19 5.92 7.99 -2.91 -0.02 5.89 15 26 H 0.28 12.38 8.31 -92.70 -0.77 11.61 15 27 H 0.12 4.14 7.79 -2.39 -0.02 4.12 15 28 H 0.13 5.07 6.54 -2.39 -0.02 5.06 15 Total: -1.00 -57.10 278.93 6.00 -51.10 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.21 Total: 11.65 kcal Atomic # 6 Polarization: 32.62 SS G_CDS: 6.98 Total: 39.60 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -2.71 Total: -109.20 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.28 Total: -32.62 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.23 Total: 3.93 kcal Total: -57.10 6.00 -51.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167710942.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.885 kcal (2) G-P(sol) polarization free energy of solvation -57.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds