Wall clock time and date at job start Mon Mar 30 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47180 * 2 1 4 4 N 1.41591 * 113.99934 * 180.02562 * 3 2 1 5 5 C 1.34784 * 120.00116 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.47865 * 120.00304 * 179.97438 * 5 4 3 8 8 C 1.39665 * 120.09843 * 359.97438 * 7 5 4 9 9 C 1.38047 * 120.03832 * 180.02562 * 8 7 5 10 10 C 1.38176 * 120.23812 * 359.67600 * 9 8 7 11 11 C 1.39179 * 120.20540 * 0.60009 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.69520 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31631 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00147 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46962 * 89.99772 * 17 15 13 19 19 H 1.48502 * 109.47274 * 210.00042 * 17 15 13 20 20 H 1.48499 * 109.47299 * 330.00031 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.42658 * 11 10 9 22 22 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47385 * 299.99857 * 1 2 3 24 24 H 1.08999 * 109.47126 * 60.00297 * 1 2 3 25 25 H 1.09007 * 109.46973 * 239.99965 * 2 1 3 26 26 H 1.08994 * 109.47014 * 120.00434 * 2 1 3 27 27 H 0.96996 * 120.00475 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.98607 * 0.02562 * 8 7 5 29 29 H 1.07993 * 119.87788 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.89897 * 180.29644 * 10 9 8 31 31 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4178 1.4590 -0.0006 5 6 3.9975 2.6758 -0.0001 6 8 3.3085 3.6772 0.0003 7 6 5.4716 2.7926 -0.0002 8 6 6.2652 1.6434 -0.0001 9 6 7.6413 1.7538 0.0004 10 6 8.2394 2.9994 -0.0059 11 6 7.4582 4.1513 -0.0002 12 16 8.2260 5.7371 -0.0001 13 6 8.2374 6.0716 1.7298 14 1 7.9047 5.3176 2.4278 15 6 8.6738 7.3035 2.1953 16 7 8.6828 7.5530 3.4877 17 14 9.2486 8.6078 0.9882 18 1 8.0944 9.4491 0.5816 19 1 10.2793 9.4601 1.6338 20 1 9.8293 7.9514 -0.2107 21 6 6.0731 4.0499 -0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9677 0.6600 -0.0006 28 1 5.8022 0.6676 -0.0005 29 1 8.2524 0.8635 0.0008 30 1 9.3164 3.0794 -0.0103 31 1 8.9875 8.4144 3.8132 32 1 5.4644 4.9420 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176002079.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:19 Heat of formation + Delta-G solvation = -8.712389 kcal Electronic energy + Delta-G solvation = -16928.196891 eV Core-core repulsion = 13982.202096 eV Total energy + Delta-G solvation = -2945.994795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89861 -38.19569 -37.20851 -33.28916 -32.50670 -31.39147 -30.72868 -29.69285 -25.69118 -23.84822 -23.36841 -22.41600 -20.65517 -18.78529 -18.03754 -17.17410 -16.20548 -16.05093 -15.40213 -15.00408 -14.63928 -14.54557 -14.46167 -13.69949 -13.49973 -13.02505 -12.94511 -12.85287 -12.41110 -12.06226 -11.92788 -11.38843 -11.25199 -11.10367 -11.06519 -10.67280 -9.99403 -9.88326 -9.26925 -9.09081 -9.03775 -8.71743 -8.21123 -7.15491 -6.33639 -4.09739 1.02109 1.51971 1.73337 2.84612 2.99943 3.27426 3.38206 3.47885 3.99945 4.24178 4.25543 4.54603 4.58167 4.74145 4.87016 4.88549 4.94337 5.04710 5.09476 5.31862 5.44894 5.57120 5.70472 5.71255 5.81010 6.10269 6.41074 6.48625 6.65644 6.77336 7.01722 7.24402 7.90430 8.26417 8.43841 9.10035 10.75758 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004097 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.205980 B = 6832.847728 C = 7289.319706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.026 3.974 3 O -0.144 6.144 4 N -0.600 5.600 5 C 0.576 3.424 6 O -0.514 6.514 7 C -0.141 4.141 8 C -0.088 4.088 9 C -0.137 4.137 10 C -0.049 4.049 11 C -0.083 4.083 12 S -0.109 6.109 13 C -0.511 4.511 14 H 0.092 0.908 15 C 0.095 3.905 16 N -0.875 5.875 17 Si 0.858 3.142 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.239 1.239 21 C -0.013 4.013 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.405 0.595 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.272 0.728 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 -17.477 -8.038 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 O -0.148 6.148 4 N -0.304 5.304 5 C 0.365 3.635 6 O -0.388 6.388 7 C -0.146 4.146 8 C -0.107 4.107 9 C -0.157 4.157 10 C -0.070 4.070 11 C -0.194 4.194 12 S 0.125 5.875 13 C -0.658 4.658 14 H 0.110 0.890 15 C -0.114 4.114 16 N -0.511 5.511 17 Si 0.682 3.318 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.163 1.163 21 C -0.035 4.035 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.246 0.754 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.980 -15.734 -8.745 19.690 hybrid contribution -0.087 -0.899 0.835 1.230 sum -8.067 -16.633 -7.909 20.107 Atomic orbital electron populations 1.21695 0.91860 1.02989 1.03905 1.22995 0.96633 0.84286 1.01214 1.90601 1.01545 1.25344 1.97322 1.47447 0.94768 1.09001 1.79148 1.18351 0.87504 0.81489 0.76184 1.90808 1.63887 1.35757 1.48305 1.19530 0.89929 0.95112 1.10064 1.21173 0.94311 0.96457 0.98783 1.21049 0.94182 0.97756 1.02667 1.21935 1.00629 0.91268 0.93168 1.22212 0.94882 1.00023 1.02253 1.83095 1.75617 1.14463 1.14331 1.22247 1.51286 1.04545 0.87678 0.89025 1.24746 0.94054 0.97375 0.95192 1.69925 1.44789 1.23921 1.12465 0.86733 0.79950 0.82692 0.82386 1.18977 1.19783 1.16320 1.21908 0.94187 0.96483 0.90910 0.90179 0.91252 0.91311 0.92150 0.92097 0.75392 0.86391 0.85401 0.84697 0.91771 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.03 0.21 6.95 37.16 0.26 0.47 16 3 O -0.14 -1.94 11.11 -29.62 -0.33 -2.27 16 4 N -0.60 -7.81 6.34 30.54 0.19 -7.62 16 5 C 0.58 9.85 7.92 -12.32 -0.10 9.75 16 6 O -0.51 -11.08 16.75 -12.83 -0.21 -11.29 16 7 C -0.14 -2.32 5.87 -105.00 -0.62 -2.93 16 8 C -0.09 -1.12 9.54 -39.12 -0.37 -1.49 16 9 C -0.14 -1.80 10.02 -39.67 -0.40 -2.19 16 10 C -0.05 -0.82 9.79 -39.25 -0.38 -1.20 16 11 C -0.08 -1.69 5.45 -39.00 -0.21 -1.90 16 12 S -0.11 -2.61 19.38 -107.50 -2.08 -4.69 16 13 C -0.51 -14.56 10.01 30.92 0.31 -14.25 16 14 H 0.09 2.84 8.02 -52.49 -0.42 2.41 16 15 C 0.10 2.74 5.50 -17.45 -0.10 2.64 16 16 N -0.87 -26.23 13.97 55.49 0.78 -25.45 16 17 Si 0.86 20.94 27.74 -169.99 -4.71 16.22 16 18 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 21 C -0.01 -0.26 9.34 -38.92 -0.36 -0.62 16 22 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.41 3.57 6.57 -40.82 -0.27 3.30 16 28 H 0.12 0.98 6.40 -52.49 -0.34 0.64 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.14 3.06 7.65 -52.49 -0.40 2.65 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -34.53 300.67 -6.97 -41.50 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.54 Total: 1.42 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.59 Total: -12.34 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.97 Total: -33.07 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.54 Total: -13.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.08 Total: -4.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.53 -6.97 -41.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176002079.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.788 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds