Wall clock time and date at job start Mon Mar 30 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47180 * 2 1 4 4 N 1.41591 * 113.99934 * 180.02562 * 3 2 1 5 5 C 1.34784 * 120.00116 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.47865 * 120.00304 * 179.97438 * 5 4 3 8 8 C 1.39665 * 120.09843 * 359.97438 * 7 5 4 9 9 C 1.38047 * 120.03832 * 180.02562 * 8 7 5 10 10 C 1.38176 * 120.23812 * 359.67600 * 9 8 7 11 11 C 1.39179 * 120.20540 * 0.60009 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.69520 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31631 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00147 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46962 * 89.99772 * 17 15 13 19 19 H 1.48502 * 109.47274 * 210.00042 * 17 15 13 20 20 H 1.48499 * 109.47299 * 330.00031 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.42658 * 11 10 9 22 22 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47385 * 299.99857 * 1 2 3 24 24 H 1.08999 * 109.47126 * 60.00297 * 1 2 3 25 25 H 1.09007 * 109.46973 * 239.99965 * 2 1 3 26 26 H 1.08994 * 109.47014 * 120.00434 * 2 1 3 27 27 H 0.96996 * 120.00475 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.98607 * 0.02562 * 8 7 5 29 29 H 1.07993 * 119.87788 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.89897 * 180.29644 * 10 9 8 31 31 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4178 1.4590 -0.0006 5 6 3.9975 2.6758 -0.0001 6 8 3.3085 3.6772 0.0003 7 6 5.4716 2.7926 -0.0002 8 6 6.2652 1.6434 -0.0001 9 6 7.6413 1.7538 0.0004 10 6 8.2394 2.9994 -0.0059 11 6 7.4582 4.1513 -0.0002 12 16 8.2260 5.7371 -0.0001 13 6 8.2374 6.0716 1.7298 14 1 7.9047 5.3176 2.4278 15 6 8.6738 7.3035 2.1953 16 7 8.6828 7.5530 3.4877 17 14 9.2486 8.6078 0.9882 18 1 8.0944 9.4491 0.5816 19 1 10.2793 9.4601 1.6338 20 1 9.8293 7.9514 -0.2107 21 6 6.0731 4.0499 -0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9677 0.6600 -0.0006 28 1 5.8022 0.6676 -0.0005 29 1 8.2524 0.8635 0.0008 30 1 9.3164 3.0794 -0.0103 31 1 8.9875 8.4144 3.8132 32 1 5.4644 4.9420 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176002079.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:19 Heat of formation + Delta-G solvation = -32.507306 kcal Electronic energy + Delta-G solvation = -16929.228716 eV Core-core repulsion = 13982.202096 eV Total energy + Delta-G solvation = -2947.026620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18460 -39.36554 -38.34935 -34.71396 -34.39658 -32.40093 -32.00626 -30.72593 -27.91805 -25.11499 -24.06853 -23.69438 -21.92178 -20.15240 -19.56167 -18.65184 -17.33412 -17.13929 -17.03770 -16.71273 -15.91170 -15.81189 -15.69778 -14.99414 -14.80746 -14.70324 -14.01601 -13.64427 -13.55220 -13.53857 -13.15438 -13.07117 -12.71731 -12.58576 -12.30493 -11.85297 -11.80488 -11.35545 -11.21729 -10.97478 -10.21543 -9.93017 -9.77528 -9.14419 -8.53598 -6.27904 -0.27384 0.17654 0.70034 1.07584 1.32324 1.44427 1.62924 1.73251 2.22026 2.56484 2.84743 2.93983 3.26781 3.58483 3.88071 3.96750 4.05108 4.11098 4.28392 4.35263 4.40248 4.58705 4.79654 4.86844 4.90744 5.11941 5.18127 5.26192 5.41055 5.65021 5.69080 5.78391 6.10759 6.19844 6.88888 7.10113 8.60014 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004097 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.205980 B = 6832.847728 C = 7289.319706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.016 3.984 3 O -0.176 6.176 4 N -0.576 5.576 5 C 0.573 3.427 6 O -0.574 6.574 7 C -0.146 4.146 8 C -0.058 4.058 9 C -0.117 4.117 10 C -0.053 4.053 11 C -0.117 4.117 12 S -0.113 6.113 13 C -0.525 4.525 14 H 0.047 0.953 15 C 0.040 3.960 16 N -0.920 5.920 17 Si 0.922 3.078 18 H -0.264 1.264 19 H -0.257 1.257 20 H -0.225 1.225 21 C -0.040 4.040 22 H 0.110 0.890 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.427 0.573 28 H 0.178 0.822 29 H 0.183 0.817 30 H 0.144 0.856 31 H 0.278 0.722 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 -21.126 -9.522 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 O -0.182 6.182 4 N -0.279 5.279 5 C 0.363 3.637 6 O -0.453 6.453 7 C -0.152 4.152 8 C -0.076 4.076 9 C -0.136 4.136 10 C -0.074 4.074 11 C -0.228 4.228 12 S 0.121 5.879 13 C -0.672 4.672 14 H 0.065 0.935 15 C -0.165 4.165 16 N -0.557 5.557 17 Si 0.742 3.258 18 H -0.188 1.188 19 H -0.182 1.182 20 H -0.148 1.148 21 C -0.062 4.062 22 H 0.129 0.871 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.273 0.727 28 H 0.195 0.805 29 H 0.200 0.800 30 H 0.162 0.838 31 H 0.087 0.913 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.556 -19.470 -10.235 23.258 hybrid contribution -0.368 -0.087 1.314 1.367 sum -7.924 -19.557 -8.921 22.909 Atomic orbital electron populations 1.21767 0.91048 1.04633 1.02958 1.23393 0.97207 0.82139 1.03250 1.90622 1.00999 1.29108 1.97458 1.47046 0.95563 1.08543 1.76798 1.18448 0.87641 0.81912 0.75725 1.90780 1.65129 1.38031 1.51319 1.19534 0.90132 0.95097 1.10404 1.21791 0.94065 0.97349 0.94420 1.21600 0.94730 0.97766 0.99517 1.22154 1.01043 0.91584 0.92629 1.22062 0.95289 0.98927 1.06562 1.82637 1.76540 1.18422 1.10275 1.22395 1.50696 1.03781 0.90318 0.93480 1.25738 0.94035 0.99639 0.97058 1.70034 1.46176 1.24957 1.14563 0.85771 0.79808 0.79708 0.80467 1.18837 1.18163 1.14800 1.21633 0.93934 0.97215 0.93429 0.87145 0.92395 0.92142 0.89818 0.90183 0.72707 0.80475 0.79957 0.83805 0.91265 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.02 0.21 6.95 71.98 0.50 0.71 16 3 O -0.18 -4.46 11.11 -21.41 -0.24 -4.70 16 4 N -0.58 -13.51 6.34 -175.58 -1.11 -14.63 16 5 C 0.57 19.37 7.92 86.79 0.69 20.06 16 6 O -0.57 -25.89 16.75 13.48 0.23 -25.67 16 7 C -0.15 -4.65 5.87 -20.11 -0.12 -4.77 16 8 C -0.06 -1.19 9.54 22.57 0.22 -0.97 16 9 C -0.12 -2.47 10.02 22.21 0.22 -2.25 16 10 C -0.05 -1.68 9.79 22.48 0.22 -1.46 16 11 C -0.12 -4.88 5.45 22.65 0.12 -4.76 16 12 S -0.11 -5.57 19.38 -56.49 -1.09 -6.67 16 13 C -0.52 -31.51 10.01 67.94 0.68 -30.83 16 14 H 0.05 3.12 8.02 -2.91 -0.02 3.10 16 15 C 0.04 2.40 5.50 84.84 0.47 2.87 16 16 N -0.92 -57.34 13.97 21.64 0.30 -57.04 16 17 Si 0.92 44.15 27.74 68.60 1.90 46.05 16 18 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.22 -10.15 6.74 99.48 0.67 -9.48 16 21 C -0.04 -1.66 9.34 22.70 0.21 -1.45 16 22 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.43 5.45 6.57 -92.71 -0.61 4.84 16 28 H 0.18 1.55 6.40 -2.91 -0.02 1.54 16 29 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 32 H 0.11 5.08 7.65 -2.91 -0.02 5.06 16 Total: -1.00 -83.53 300.67 4.43 -79.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.50 Total: 7.29 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.95 Total: -23.74 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.81 Total: -71.66 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.01 Total: -30.36 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.09 Total: -6.67 kcal Total: -83.53 4.43 -79.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176002079.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.592 kcal (2) G-P(sol) polarization free energy of solvation -83.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds