Wall clock time and date at job start Mon Mar 30 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.59096 * 2 1 4 4 N 1.45954 * 109.71628 * 239.62670 * 2 1 3 5 5 C 1.39204 * 123.22363 * 294.94972 * 4 2 1 6 6 C 1.39592 * 118.03252 * 160.63274 * 5 4 2 7 7 C 1.37825 * 120.38047 * 179.00166 * 6 5 4 8 8 C 1.38311 * 120.09627 * 0.04527 * 7 6 5 9 9 C 1.38155 * 119.83385 * 0.23663 * 8 7 6 10 10 C 1.38319 * 120.32868 * 359.85467 * 9 8 7 11 11 S 1.76521 * 119.03856 * 179.58096 * 10 9 8 12 12 O 1.42109 * 104.39916 * 280.80235 * 11 10 9 13 13 O 1.42096 * 104.40744 * 49.02277 * 11 10 9 14 14 C 1.53680 * 109.59017 * 120.29579 * 2 1 3 15 15 H 1.08998 * 109.85167 * 295.83104 * 14 2 1 16 16 C 1.50699 * 109.90463 * 174.86942 * 14 2 1 17 17 H 1.08006 * 120.00149 * 1.90875 * 16 14 2 18 18 C 1.37882 * 120.00001 * 181.90365 * 16 14 2 19 19 N 1.31515 * 120.00124 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99995 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47077 * 89.99906 * 20 18 16 22 22 H 1.48495 * 109.47410 * 210.00042 * 20 18 16 23 23 H 1.48497 * 109.47296 * 330.00524 * 20 18 16 24 24 H 1.08992 * 109.47136 * 299.70056 * 1 2 3 25 25 H 1.08998 * 109.47154 * 59.70673 * 1 2 3 26 26 H 1.08998 * 109.46736 * 179.70408 * 1 2 3 27 27 H 0.97000 * 118.39006 * 114.96970 * 4 2 1 28 28 H 1.08002 * 119.80942 * 359.27841 * 6 5 4 29 29 H 1.07998 * 119.95278 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.07904 * 180.21753 * 8 7 6 31 31 H 1.08005 * 119.83580 * 179.87228 * 9 8 7 32 32 H 0.96990 * 119.99996 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 7 2.0224 -0.6947 -1.1854 5 6 1.8173 -2.0525 -1.4140 6 6 1.9529 -2.5257 -2.7202 7 6 1.7808 -3.8646 -2.9979 8 6 1.4710 -4.7496 -1.9811 9 6 1.3296 -4.2873 -0.6869 10 6 1.4992 -2.9443 -0.4025 11 16 1.2996 -2.3890 1.2611 12 8 -0.1078 -2.3044 1.4390 13 8 2.0869 -3.2873 2.0307 14 6 2.0453 -0.7304 1.2501 15 1 1.7486 -0.1851 2.1460 16 6 3.5469 -0.8449 1.1950 17 1 4.0916 -0.4119 0.3689 18 6 4.2255 -1.5024 2.1991 19 7 3.5623 -2.0300 3.2048 20 14 6.0869 -1.6438 2.1312 21 1 6.6973 -0.4791 2.8211 22 1 6.5131 -2.8969 2.8042 23 1 6.5301 -1.6675 0.7141 24 1 -0.3633 0.5091 0.8926 25 1 -0.3633 0.5184 -0.8873 26 1 -0.3633 -1.0277 -0.0053 27 1 2.5171 -0.1854 -1.8463 28 1 2.1984 -1.8393 -3.5171 29 1 1.8877 -4.2233 -4.0110 30 1 1.3396 -5.7993 -2.1985 31 1 1.0856 -4.9780 0.1067 32 1 4.0397 -2.4929 3.9110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214320178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:29 Heat of formation + Delta-G solvation = -24.610863 kcal Electronic energy + Delta-G solvation = -19386.404591 eV Core-core repulsion = 16439.720386 eV Total energy + Delta-G solvation = -2946.684205 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.02920 -36.56669 -35.25885 -33.97018 -33.13944 -31.37627 -30.34239 -28.15966 -27.64446 -23.75304 -22.43506 -22.34131 -19.84999 -17.64212 -17.07445 -16.87036 -16.19185 -15.57900 -15.04294 -14.30517 -14.01089 -13.85286 -13.61037 -13.26298 -13.07914 -12.54187 -12.18686 -11.99234 -11.88235 -11.48658 -11.23886 -11.03339 -10.92439 -10.85933 -10.45501 -10.15476 -10.00616 -9.79045 -9.47709 -9.16276 -8.85920 -8.56344 -8.51262 -6.99559 -6.50370 -4.43026 1.74788 1.95431 2.11205 3.15743 3.22516 3.25945 3.90237 4.12079 4.26660 4.50958 4.98014 5.25999 5.35388 5.39324 5.55382 5.69487 5.76941 5.89794 5.93692 6.13248 6.26898 6.32945 6.44790 6.53853 6.58228 6.71478 6.85993 6.94932 7.01305 7.34120 7.44397 7.59445 7.91856 8.11781 8.36656 9.00214 10.51371 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.010559 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.615603 B = 2651.150740 C = 2875.672676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.098 0.902 4 N -0.730 5.730 5 C 0.302 3.698 6 C -0.218 4.218 7 C -0.052 4.052 8 C -0.203 4.203 9 C 0.005 3.995 10 C -0.675 4.675 11 S 2.356 3.644 12 O -1.017 7.017 13 O -0.924 6.924 14 C -0.363 4.363 15 H 0.107 0.893 16 C -0.456 4.456 17 H 0.082 0.918 18 C 0.049 3.951 19 N -0.776 5.776 20 Si 0.916 3.084 21 H -0.275 1.275 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.397 0.603 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 2.680 -8.180 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.058 3.942 3 H 0.116 0.884 4 N -0.356 5.356 5 C 0.196 3.804 6 C -0.241 4.241 7 C -0.071 4.071 8 C -0.224 4.224 9 C -0.014 4.014 10 C -0.760 4.760 11 S 2.546 3.454 12 O -1.013 7.013 13 O -0.919 6.919 14 C -0.474 4.474 15 H 0.124 0.876 16 C -0.506 4.506 17 H 0.100 0.900 18 C -0.167 4.167 19 N -0.412 5.412 20 Si 0.742 3.258 21 H -0.201 1.201 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.230 0.770 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.526 2.024 -7.198 7.631 hybrid contribution 1.342 0.022 -0.955 1.647 sum -0.183 2.046 -8.152 8.407 Atomic orbital electron populations 1.22805 0.95533 1.05756 1.02066 1.20835 0.92693 0.96650 0.84039 0.88382 1.44446 1.61089 1.05663 1.24435 1.16974 0.88223 0.83432 0.91763 1.20825 1.12029 0.96471 0.94766 1.20812 0.95137 0.92902 0.98283 1.20839 1.08897 0.99207 0.93441 1.20508 0.91334 0.93139 0.96443 1.30586 1.19456 1.00685 1.25308 1.14685 0.74713 0.82393 0.73592 1.93257 1.34677 1.88368 1.84973 1.93443 1.68524 1.65224 1.64672 1.27587 1.06297 1.13143 1.00400 0.87616 1.20738 0.87532 1.34817 1.07497 0.89993 1.25266 1.00829 0.95085 0.95471 1.69809 1.37078 1.26034 1.08286 0.86143 0.82598 0.78025 0.78987 1.20066 1.20332 1.19250 0.91036 0.92511 0.89253 0.76951 0.86583 0.86681 0.86668 0.86435 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.61 8.59 37.16 0.32 -3.29 16 2 C 0.16 2.98 3.34 -67.87 -0.23 2.75 16 3 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 4 N -0.73 -12.72 4.43 -52.20 -0.23 -12.95 16 5 C 0.30 6.00 6.11 -83.89 -0.51 5.49 16 6 C -0.22 -3.71 9.78 -39.23 -0.38 -4.09 16 7 C -0.05 -0.85 10.03 -39.71 -0.40 -1.25 16 8 C -0.20 -3.63 10.06 -39.59 -0.40 -4.03 16 9 C 0.01 0.11 9.52 -39.58 -0.38 -0.27 16 10 C -0.68 -15.44 5.29 -39.44 -0.21 -15.65 16 11 S 2.36 59.65 4.41 -107.50 -0.47 59.18 16 12 O -1.02 -27.01 15.11 -57.50 -0.87 -27.88 16 13 O -0.92 -26.59 13.83 -57.50 -0.80 -27.39 16 14 C -0.36 -8.20 2.45 -27.53 -0.07 -8.26 16 15 H 0.11 2.39 8.14 -51.93 -0.42 1.96 16 16 C -0.46 -10.89 8.08 -34.44 -0.28 -11.17 16 17 H 0.08 1.84 7.56 -52.48 -0.40 1.44 16 18 C 0.05 1.23 4.92 -17.82 -0.09 1.15 16 19 N -0.78 -20.97 10.01 55.43 0.55 -20.42 16 20 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.87 4.58 -51.93 -0.24 1.64 16 27 H 0.40 5.57 8.76 -40.82 -0.36 5.21 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 32 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -31.71 270.81 -8.88 -40.59 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.51 Total: 8.69 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: -2.62 Total: -38.63 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.32 Total: -33.37 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -1.66 Total: -55.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 59.65 SS G_CDS: -0.47 Total: 59.18 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.71 -8.88 -40.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214320178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.977 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds