Wall clock time and date at job start Mon Mar 30 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.59117 * 2 1 4 4 N 1.45934 * 109.59314 * 120.44133 * 2 1 3 5 5 C 1.39208 * 123.27385 * 65.29767 * 4 2 1 6 6 C 1.39592 * 118.02278 * 199.16820 * 5 4 2 7 7 C 1.37814 * 120.38887 * 180.38887 * 6 5 4 8 8 C 1.38312 * 120.09423 * 0.02562 * 7 6 5 9 9 C 1.38161 * 119.83735 * 359.83801 * 8 7 6 10 10 C 1.38316 * 120.32027 * 0.02562 * 9 8 7 11 11 S 1.76505 * 119.02275 * 180.42026 * 10 9 8 12 12 O 1.42098 * 104.42778 * 79.01188 * 11 10 9 13 13 O 1.42102 * 104.38641 * 310.77805 * 11 10 9 14 14 C 1.53697 * 109.59057 * 239.71027 * 2 1 3 15 15 H 1.09002 * 109.85472 * 64.37399 * 14 2 1 16 16 C 1.50698 * 109.85946 * 185.39278 * 14 2 1 17 17 H 1.07995 * 119.99721 * 359.97438 * 16 14 2 18 18 C 1.37876 * 120.00073 * 180.02562 * 16 14 2 19 19 N 1.31513 * 119.99865 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00290 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47109 * 59.99321 * 20 18 16 22 22 H 1.48498 * 109.47607 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47103 * 299.99658 * 20 18 16 24 24 H 1.08997 * 109.46897 * 180.29283 * 1 2 3 25 25 H 1.08999 * 109.46768 * 300.28996 * 1 2 3 26 26 H 1.08997 * 109.47256 * 60.29105 * 1 2 3 27 27 H 0.97002 * 118.36244 * 245.27796 * 4 2 1 28 28 H 1.08005 * 119.80402 * 0.35607 * 6 5 4 29 29 H 1.07998 * 119.95603 * 180.02562 * 7 6 5 30 30 H 1.08002 * 120.08493 * 179.81600 * 8 7 6 31 31 H 1.08000 * 119.83805 * 180.02562 * 9 8 7 32 32 H 0.97001 * 119.99852 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 7 2.0193 -0.6966 1.1853 5 6 1.8172 -2.0554 1.4106 6 6 1.9535 -2.5312 2.7158 7 6 1.7721 -3.8690 2.9926 8 6 1.4536 -4.7507 1.9757 9 6 1.3144 -4.2864 0.6819 10 6 1.4925 -2.9444 0.3986 11 16 1.2953 -2.3866 -1.2644 12 8 -0.1115 -2.2971 -1.4433 13 8 2.0804 -3.2869 -2.0341 14 6 2.0453 -0.7303 -1.2503 15 1 1.7517 -0.1830 -2.1461 16 6 3.5464 -0.8500 -1.1911 17 1 4.0873 -0.4468 -0.3478 18 6 4.2292 -1.4733 -2.2139 19 7 3.5705 -1.9638 -3.2411 20 14 6.0898 -1.6210 -2.1409 21 1 6.4783 -2.3883 -0.9303 22 1 6.5784 -2.3276 -3.3522 23 1 6.6921 -0.2648 -2.0817 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3633 0.5183 0.8874 26 1 -0.3633 0.5093 -0.8925 27 1 2.5102 -0.1874 1.8492 28 1 2.2030 -1.8469 3.5133 29 1 1.8788 -4.2294 4.0051 30 1 1.3144 -5.7995 2.1923 31 1 1.0652 -4.9748 -0.1121 32 1 4.0509 -2.4020 -3.9609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214320237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:31 Heat of formation + Delta-G solvation = -27.150999 kcal Electronic energy + Delta-G solvation = -19372.774530 eV Core-core repulsion = 16425.980177 eV Total energy + Delta-G solvation = -2946.794353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.04173 -36.57877 -35.27129 -33.99493 -33.16294 -31.38320 -30.35461 -28.16862 -27.64864 -23.75740 -22.44308 -22.35072 -19.86110 -17.64122 -17.08721 -16.88863 -16.20594 -15.59355 -15.04576 -14.32195 -14.02883 -13.86001 -13.61452 -13.27063 -13.09226 -12.54132 -12.19253 -12.00047 -11.88511 -11.49587 -11.24584 -11.02798 -10.93402 -10.87261 -10.43515 -10.17464 -10.02984 -9.80187 -9.48561 -9.18814 -8.91798 -8.56632 -8.52308 -7.00253 -6.52281 -4.44916 1.73769 1.93563 2.10542 3.16955 3.22807 3.23374 3.89361 4.11688 4.25815 4.49770 4.98025 5.24503 5.34701 5.38619 5.53680 5.69196 5.76409 5.89491 5.92808 6.12375 6.25961 6.32685 6.43976 6.52266 6.57460 6.71126 6.85009 6.94332 7.00489 7.33286 7.43435 7.59057 7.91006 8.10782 8.36409 8.99752 10.51268 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.010499 C = 0.009689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.783786 B = 2666.157224 C = 2889.193571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.099 0.901 4 N -0.730 5.730 5 C 0.303 3.697 6 C -0.218 4.218 7 C -0.052 4.052 8 C -0.203 4.203 9 C 0.005 3.995 10 C -0.676 4.676 11 S 2.358 3.642 12 O -1.016 7.016 13 O -0.927 6.927 14 C -0.363 4.363 15 H 0.108 0.892 16 C -0.457 4.457 17 H 0.082 0.918 18 C 0.053 3.947 19 N -0.783 5.783 20 Si 0.917 3.083 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.272 1.272 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.397 0.603 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 2.629 8.306 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.058 3.942 3 H 0.117 0.883 4 N -0.356 5.356 5 C 0.197 3.803 6 C -0.241 4.241 7 C -0.071 4.071 8 C -0.224 4.224 9 C -0.014 4.014 10 C -0.761 4.761 11 S 2.548 3.452 12 O -1.012 7.012 13 O -0.922 6.922 14 C -0.474 4.474 15 H 0.125 0.875 16 C -0.507 4.507 17 H 0.100 0.900 18 C -0.163 4.163 19 N -0.419 5.419 20 Si 0.743 3.257 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.197 1.197 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.230 0.770 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.569 1.986 7.308 7.734 hybrid contribution 1.350 0.011 0.950 1.651 sum -0.218 1.997 8.258 8.499 Atomic orbital electron populations 1.22811 0.95539 1.05758 1.02075 1.20843 0.92713 0.96651 0.84007 0.88321 1.44453 1.61379 1.05519 1.24255 1.16971 0.88165 0.83414 0.91770 1.20819 1.12020 0.96506 0.94756 1.20812 0.95062 0.92912 0.98290 1.20841 1.08870 0.99251 0.93436 1.20511 0.91319 0.93101 0.96465 1.30541 1.19562 1.00800 1.25200 1.14399 0.74740 0.82471 0.73599 1.93260 1.34592 1.88359 1.84948 1.93426 1.68977 1.64812 1.64977 1.27584 1.06273 1.13036 1.00472 0.87486 1.20705 0.87589 1.36483 1.05932 0.90015 1.25257 1.00837 0.94913 0.95261 1.69786 1.37373 1.27538 1.07216 0.86196 0.82506 0.78521 0.78491 1.19457 1.20475 1.19684 0.89254 0.92506 0.91030 0.76960 0.86560 0.86659 0.86649 0.86424 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.61 8.57 37.16 0.32 -3.29 16 2 C 0.16 2.97 3.35 -67.88 -0.23 2.75 16 3 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 4 N -0.73 -12.66 4.39 -52.21 -0.23 -12.89 16 5 C 0.30 6.00 6.10 -83.89 -0.51 5.49 16 6 C -0.22 -3.70 9.77 -39.23 -0.38 -4.08 16 7 C -0.05 -0.84 10.03 -39.71 -0.40 -1.24 16 8 C -0.20 -3.62 10.06 -39.58 -0.40 -4.02 16 9 C 0.01 0.11 9.52 -39.58 -0.38 -0.26 16 10 C -0.68 -15.42 5.28 -39.43 -0.21 -15.63 16 11 S 2.36 59.66 4.42 -107.50 -0.47 59.18 16 12 O -1.02 -26.93 15.10 -57.50 -0.87 -27.80 16 13 O -0.93 -26.70 14.07 -57.50 -0.81 -27.51 16 14 C -0.36 -8.19 2.43 -27.52 -0.07 -8.25 16 15 H 0.11 2.42 8.14 -51.93 -0.42 2.00 16 16 C -0.46 -10.93 8.05 -34.44 -0.28 -11.21 16 17 H 0.08 1.83 7.52 -52.49 -0.39 1.43 16 18 C 0.05 1.33 4.90 -17.82 -0.09 1.24 16 19 N -0.78 -21.18 10.27 55.43 0.57 -20.61 16 20 Si 0.92 19.76 29.54 -169.99 -5.02 14.74 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H 0.09 1.87 4.57 -51.93 -0.24 1.63 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.40 5.52 8.76 -40.82 -0.36 5.16 16 28 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 32 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 271.12 15.07 4.09 4.09 Total: -1.00 -31.73 271.12 -8.87 -40.60 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.51 Total: 8.70 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: -2.62 Total: -38.50 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.34 Total: -33.50 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -1.68 Total: -55.31 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 59.66 SS G_CDS: -0.47 Total: 59.18 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.73 -8.87 -40.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214320237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.445 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds