Wall clock time and date at job start Mon Mar 30 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38306 * 120.08370 * 2 1 4 4 C 1.37816 * 120.09616 * 179.82527 * 3 2 1 5 5 C 1.39596 * 120.38263 * 359.95626 * 4 3 2 6 6 C 1.38559 * 119.15447 * 0.35413 * 5 4 3 7 7 C 1.38167 * 120.07854 * 179.97438 * 2 1 3 8 8 S 1.76520 * 120.75808 * 179.53161 * 6 5 4 9 9 O 1.42097 * 104.40592 * 259.36250 * 8 6 5 10 10 O 1.42099 * 104.40923 * 131.13254 * 8 6 5 11 11 C 1.81872 * 103.57357 * 15.24473 * 8 6 5 12 12 C 1.53685 * 107.49727 * 314.47030 * 11 8 6 13 13 H 1.09000 * 109.58733 * 304.66531 * 12 11 8 14 14 C 1.50695 * 109.58555 * 184.37873 * 12 11 8 15 15 H 1.08004 * 120.00546 * 0.27511 * 14 12 11 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 12 11 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 N 1.39203 * 118.02983 * 181.00523 * 5 4 3 23 23 H 1.08997 * 109.47054 * 90.00118 * 1 2 3 24 24 H 1.09000 * 109.47458 * 209.99990 * 1 2 3 25 25 H 1.08997 * 109.47037 * 330.00210 * 1 2 3 26 26 H 1.07997 * 119.95321 * 359.80213 * 3 2 1 27 27 H 1.08001 * 119.81445 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.83835 * 0.08853 * 7 2 1 29 29 H 1.08996 * 109.85190 * 194.96865 * 11 8 6 30 30 H 1.09000 * 109.84688 * 73.96475 * 11 8 6 31 31 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 32 32 H 0.97004 * 118.36879 * 19.11187 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1968 0.0000 4 6 3.5784 1.1971 0.0036 5 6 4.2847 -0.0070 0.0083 6 6 3.5825 -1.2015 0.0017 7 6 2.1995 -1.1956 0.0005 8 16 4.4327 -2.7484 -0.0052 9 8 4.3816 -3.1739 -1.3601 10 8 3.8087 -3.4995 1.0271 11 6 6.1327 -2.3033 0.4634 12 6 6.5295 -1.0663 -0.3578 13 1 6.3985 -1.2751 -1.4195 14 6 7.9706 -0.7199 -0.0851 15 1 8.5502 -1.3210 0.5999 16 6 8.5509 0.3607 -0.7149 17 7 7.8467 1.0894 -1.5531 18 14 10.3370 0.7905 -0.3763 19 1 11.2098 0.0751 -1.3416 20 1 10.5305 2.2553 -0.5255 21 1 10.6906 0.3829 1.0071 22 7 5.6753 0.0504 0.0334 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6609 2.1324 -0.0032 27 1 4.1152 2.1342 0.0032 28 1 1.6581 -2.1301 -0.0005 29 1 6.8072 -3.1293 0.2379 30 1 6.1743 -2.0702 1.5274 31 1 8.2549 1.8498 -1.9959 32 1 6.0975 0.8733 0.3258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214320756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:06 Heat of formation + Delta-G solvation = -70.679704 kcal Electronic energy + Delta-G solvation = -18437.974830 eV Core-core repulsion = 15489.292931 eV Total energy + Delta-G solvation = -2948.681900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51702 -38.20345 -37.73896 -36.95168 -34.74297 -33.03576 -32.08436 -30.69813 -27.98869 -26.46772 -24.33113 -23.19703 -22.14898 -19.60436 -19.13089 -18.44107 -17.53720 -17.21359 -16.88777 -16.71224 -16.23602 -15.28620 -15.14801 -14.99333 -14.76861 -14.31285 -14.18478 -13.50385 -13.27715 -13.18802 -13.07336 -13.03464 -12.90011 -12.85881 -12.77670 -12.33413 -12.16487 -11.99236 -11.46196 -11.05171 -10.87672 -10.56993 -10.17966 -8.31650 -8.25507 -6.53151 -0.76047 0.13019 0.63702 1.42880 1.46929 1.55720 1.94905 2.34966 2.56606 2.65029 2.70943 3.20242 3.47325 3.82607 3.91695 4.07930 4.17065 4.35501 4.43764 4.52213 4.64040 4.86329 4.95495 5.03224 5.13179 5.18724 5.28297 5.34445 5.60965 5.67366 5.72259 6.03730 6.48425 6.76176 6.99341 7.22071 8.74000 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.007233 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.046685 B = 3870.348555 C = 4767.498210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.177 4.177 3 C -0.025 4.025 4 C -0.221 4.221 5 C 0.281 3.719 6 C -0.738 4.738 7 C -0.005 4.005 8 S 2.501 3.499 9 O -0.983 6.983 10 O -0.974 6.974 11 C -0.586 4.586 12 C 0.277 3.723 13 H 0.022 0.978 14 C -0.547 4.547 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.899 5.899 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.263 1.263 22 N -0.710 5.710 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.158 0.842 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.270 0.730 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 0.985 4.551 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.180 4.180 3 C -0.044 4.044 4 C -0.244 4.244 5 C 0.168 3.832 6 C -0.833 4.833 7 C -0.025 4.025 8 S 2.689 3.311 9 O -0.980 6.980 10 O -0.971 6.971 11 C -0.720 4.720 12 C 0.173 3.827 13 H 0.040 0.960 14 C -0.586 4.586 15 H 0.100 0.900 16 C -0.174 4.174 17 N -0.535 5.535 18 Si 0.793 3.207 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.187 1.187 22 N -0.332 5.332 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.080 0.920 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.229 0.075 4.153 9.218 hybrid contribution 1.492 1.328 0.025 1.997 sum -6.738 1.403 4.178 8.051 Atomic orbital electron populations 1.20679 0.88434 1.03631 1.02777 1.20016 0.97816 0.92222 1.07946 1.21285 0.92784 0.98758 0.91546 1.21208 0.95500 0.96360 1.11297 1.17696 0.84755 0.93329 0.87380 1.29284 1.06067 1.16879 1.31113 1.20565 0.90658 0.99418 0.91838 1.04824 0.78065 0.74468 0.73788 1.93499 1.87150 1.81278 1.36112 1.93476 1.74844 1.69915 1.58834 1.30510 1.19562 1.09892 1.12047 1.18326 0.91316 0.81096 0.91946 0.96027 1.21393 0.94327 1.14480 1.28371 0.89975 1.25899 1.02415 0.95682 0.93406 1.70094 1.38427 1.17895 1.27112 0.85393 0.79086 0.77202 0.79014 1.20302 1.20911 1.18699 1.45960 1.00367 1.18599 1.68286 0.90933 0.91301 0.89895 0.82482 0.85084 0.85144 0.82453 0.83162 0.92036 0.76002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.02 71.24 0.71 -1.29 16 2 C -0.18 -5.17 5.88 -19.87 -0.12 -5.29 16 3 C -0.02 -0.71 9.69 22.19 0.21 -0.49 16 4 C -0.22 -7.60 9.77 22.50 0.22 -7.38 16 5 C 0.28 11.22 6.52 38.38 0.25 11.47 16 6 C -0.74 -29.00 5.72 22.36 0.13 -28.87 16 7 C -0.01 -0.18 9.18 22.27 0.20 0.02 16 8 S 2.50 97.48 5.36 -56.49 -0.30 97.18 16 9 O -0.98 -44.45 17.96 -127.68 -2.29 -46.75 16 10 O -0.97 -39.41 17.79 -127.68 -2.27 -41.68 16 11 C -0.59 -21.66 5.99 72.21 0.43 -21.22 16 12 C 0.28 12.57 2.63 44.58 0.12 12.69 16 13 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 14 C -0.55 -25.95 8.60 25.60 0.22 -25.73 16 15 H 0.08 3.69 7.75 -2.91 -0.02 3.67 16 16 C 0.03 1.45 5.18 84.66 0.44 1.89 16 17 N -0.90 -45.98 12.51 21.45 0.27 -45.71 16 18 Si 0.97 38.29 29.54 68.60 2.03 40.31 16 19 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 N -0.71 -30.49 4.87 -322.67 -1.57 -32.06 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 25 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 29 H 0.16 5.05 8.14 -2.39 -0.02 5.03 16 30 H 0.15 4.97 8.14 -2.39 -0.02 4.95 16 31 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 32 H 0.40 17.61 7.67 -92.71 -0.71 16.90 16 Total: -1.00 -62.58 285.16 -0.89 -63.47 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.43 Total: 29.44 kcal Atomic # 6 Polarization: -67.03 SS G_CDS: 2.82 Total: -64.21 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -1.30 Total: -77.77 kcal Atomic # 8 Polarization: -83.86 SS G_CDS: -4.56 Total: -88.42 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: 97.48 SS G_CDS: -0.30 Total: 97.18 kcal Total: -62.58 -0.89 -63.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214320756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.206 kcal (2) G-P(sol) polarization free energy of solvation -62.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds