Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38316 * 120.07765 * 2 1 4 4 C 1.37821 * 120.09097 * 180.21743 * 3 2 1 5 5 C 1.39591 * 120.38241 * 359.93258 * 4 3 2 6 6 C 1.38555 * 119.15720 * 359.63587 * 5 4 3 7 7 C 1.38150 * 120.08486 * 179.97438 * 2 1 3 8 8 S 1.76526 * 120.76048 * 181.04163 * 6 5 4 9 9 O 1.42101 * 104.40369 * 100.66954 * 8 6 5 10 10 O 1.42097 * 104.40646 * 228.90044 * 8 6 5 11 11 C 1.81885 * 103.58125 * 344.80662 * 8 6 5 12 12 C 1.53686 * 107.49887 * 45.48767 * 11 8 6 13 13 H 1.09005 * 109.71707 * 55.24539 * 12 11 8 14 14 C 1.50702 * 109.59580 * 175.61894 * 12 11 8 15 15 H 1.08002 * 119.99446 * 359.25342 * 14 12 11 16 16 C 1.37871 * 120.00072 * 179.25969 * 14 12 11 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 12 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 12 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.39210 * 118.02824 * 179.52992 * 5 4 3 23 23 H 1.09001 * 109.46849 * 89.99522 * 1 2 3 24 24 H 1.08996 * 109.47055 * 209.99651 * 1 2 3 25 25 H 1.09003 * 109.47092 * 329.99629 * 1 2 3 26 26 H 1.07994 * 119.95691 * 0.19724 * 3 2 1 27 27 H 1.08007 * 119.80873 * 179.97438 * 4 3 2 28 28 H 1.08005 * 119.83507 * 0.04628 * 7 2 1 29 29 H 1.09000 * 109.84671 * 285.99205 * 11 8 6 30 30 H 1.08996 * 109.86099 * 164.98326 * 11 8 6 31 31 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 32 32 H 0.96996 * 118.38866 * 340.30251 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1969 0.0000 4 6 3.5784 1.1972 -0.0045 5 6 4.2847 -0.0068 -0.0077 6 6 3.5827 -1.2013 0.0014 7 6 2.1996 -1.1954 0.0005 8 16 4.4329 -2.7481 0.0254 9 8 4.3705 -3.1648 1.3825 10 8 3.8175 -3.5058 -1.0072 11 6 6.1370 -2.3059 -0.4314 12 6 6.5265 -1.0631 0.3845 13 1 6.3854 -1.2617 1.4470 14 6 7.9699 -0.7183 0.1223 15 1 8.5577 -1.3285 -0.5474 16 6 8.5399 0.3761 0.7374 17 7 9.8011 0.6738 0.5128 18 14 7.5230 1.4318 1.8953 19 1 6.8711 2.5225 1.1268 20 1 6.4831 0.5938 2.5446 21 1 8.4063 2.0184 2.9349 22 7 5.6756 0.0507 -0.0223 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6608 2.1325 0.0032 27 1 4.1151 2.1345 -0.0049 28 1 1.6582 -2.1300 0.0002 29 1 6.1879 -2.0803 -1.4966 30 1 6.8097 -3.1301 -0.1942 31 1 10.2033 1.4414 0.9486 32 1 6.1001 0.8714 -0.3172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214320813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -65.075642 kcal Electronic energy + Delta-G solvation = -18569.652486 eV Core-core repulsion = 15621.213597 eV Total energy + Delta-G solvation = -2948.438889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69778 -38.33660 -37.88488 -37.00726 -34.86978 -33.30869 -32.20023 -30.84968 -28.42689 -26.44142 -24.41818 -23.06584 -22.27298 -19.74881 -19.36690 -18.69954 -17.71085 -17.50397 -16.93757 -16.72766 -16.24407 -15.27710 -15.24674 -15.17322 -14.96457 -14.69631 -14.31376 -13.61212 -13.37248 -13.26004 -13.15668 -13.10637 -13.08580 -12.96290 -12.77625 -12.35660 -12.12852 -11.92500 -11.58889 -11.18467 -10.99143 -10.78642 -10.26477 -8.54605 -8.44973 -6.64536 -0.84176 0.02802 0.49560 1.23850 1.35235 1.46165 1.87241 2.18048 2.32108 2.56572 2.62196 3.01348 3.36567 3.73017 3.80646 4.00707 4.08634 4.26872 4.34624 4.36823 4.55143 4.76526 4.92662 4.93630 4.97756 5.04055 5.13759 5.20442 5.28416 5.60081 5.90009 5.99634 6.30995 6.53124 6.66274 7.06097 8.63763 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.008826 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.254374 B = 3171.815566 C = 4145.489502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.166 4.166 3 C -0.024 4.024 4 C -0.219 4.219 5 C 0.273 3.727 6 C -0.726 4.726 7 C -0.005 4.005 8 S 2.504 3.496 9 O -0.975 6.975 10 O -0.969 6.969 11 C -0.582 4.582 12 C 0.247 3.753 13 H 0.050 0.950 14 C -0.525 4.525 15 H 0.065 0.935 16 C 0.039 3.961 17 N -0.917 5.917 18 Si 0.927 3.073 19 H -0.248 1.248 20 H -0.258 1.258 21 H -0.292 1.292 22 N -0.742 5.742 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.162 0.838 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.275 0.725 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 2.007 -1.285 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.169 4.169 3 C -0.042 4.042 4 C -0.242 4.242 5 C 0.165 3.835 6 C -0.821 4.821 7 C -0.025 4.025 8 S 2.690 3.310 9 O -0.972 6.972 10 O -0.966 6.966 11 C -0.716 4.716 12 C 0.144 3.856 13 H 0.068 0.932 14 C -0.565 4.565 15 H 0.083 0.917 16 C -0.165 4.165 17 N -0.553 5.553 18 Si 0.751 3.249 19 H -0.173 1.173 20 H -0.182 1.182 21 H -0.219 1.219 22 N -0.372 5.372 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.179 0.821 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.085 0.915 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.334 1.069 -0.979 15.403 hybrid contribution 0.860 1.460 0.180 1.704 sum -14.474 2.529 -0.798 14.715 Atomic orbital electron populations 1.20720 0.88303 1.03693 1.03098 1.20093 0.97944 0.92228 1.06592 1.21349 0.92729 0.98953 0.91184 1.21295 0.95694 0.96360 1.10860 1.17624 0.84097 0.93563 0.88262 1.29371 1.06176 1.16891 1.29614 1.20619 0.90530 0.99677 0.91636 1.04829 0.77764 0.74497 0.73928 1.93517 1.86882 1.81266 1.35562 1.93496 1.74832 1.69441 1.58858 1.30432 1.20045 1.09143 1.11960 1.18830 0.90709 0.82456 0.93616 0.93245 1.21043 0.92993 1.13316 1.29101 0.91678 1.25760 0.95642 0.98263 0.96812 1.69969 1.13473 1.28451 1.43448 0.86060 0.79045 0.80071 0.79680 1.17269 1.18222 1.21897 1.46571 1.01414 1.18760 1.70418 0.90419 0.91332 0.89904 0.82053 0.84443 0.84758 0.83190 0.82435 0.91547 0.76100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.02 71.24 0.71 -1.01 16 2 C -0.17 -4.18 5.88 -19.87 -0.12 -4.30 16 3 C -0.02 -0.57 9.69 22.19 0.21 -0.35 16 4 C -0.22 -6.47 9.78 22.50 0.22 -6.25 16 5 C 0.27 9.62 6.52 38.37 0.25 9.87 16 6 C -0.73 -25.52 5.71 22.36 0.13 -25.39 16 7 C -0.01 -0.16 9.19 22.27 0.20 0.05 16 8 S 2.50 89.71 5.36 -56.49 -0.30 89.41 16 9 O -0.98 -40.17 17.96 -127.68 -2.29 -42.46 16 10 O -0.97 -36.81 17.79 -127.68 -2.27 -39.08 16 11 C -0.58 -20.55 5.99 72.21 0.43 -20.11 16 12 C 0.25 10.41 2.12 44.58 0.09 10.50 16 13 H 0.05 2.19 7.22 -2.38 -0.02 2.18 16 14 C -0.53 -26.16 9.20 25.60 0.24 -25.93 16 15 H 0.07 3.52 7.99 -2.91 -0.02 3.50 16 16 C 0.04 1.99 5.39 84.65 0.46 2.44 16 17 N -0.92 -50.93 13.96 21.45 0.30 -50.63 16 18 Si 0.93 39.79 25.21 68.60 1.73 41.52 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.26 -11.11 6.55 99.48 0.65 -10.46 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 22 N -0.74 -28.48 3.83 -322.62 -1.24 -29.72 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 26 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 27 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 29 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 30 H 0.16 4.96 8.14 -2.39 -0.02 4.94 16 31 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.40 15.16 6.54 -92.71 -0.61 14.55 16 Total: -1.00 -65.37 279.20 -0.76 -66.13 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.48 Total: 25.30 kcal Atomic # 6 Polarization: -63.30 SS G_CDS: 2.83 Total: -60.47 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -0.94 Total: -80.35 kcal Atomic # 8 Polarization: -76.97 SS G_CDS: -4.56 Total: -81.54 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.73 Total: 41.52 kcal Atomic # 16 Polarization: 89.71 SS G_CDS: -0.30 Total: 89.41 kcal Total: -65.37 -0.76 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214320813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.058 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds