Wall clock time and date at job start Mon Mar 30 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37659 * 119.62247 * 2 1 4 4 C 1.38274 * 120.15371 * 179.91472 * 3 2 1 5 5 C 1.38152 * 119.56019 * 359.66197 * 4 3 2 6 6 C 1.38329 * 120.48597 * 0.13122 * 5 4 3 7 7 C 1.38440 * 120.52422 * 0.47916 * 6 5 4 8 8 N 1.38740 * 124.83365 * 178.54507 * 7 6 5 9 9 C 1.45567 * 116.96543 * 26.28530 * 8 7 6 10 10 H 1.09003 * 109.52241 * 56.53881 * 9 8 7 11 11 C 1.50700 * 109.52040 * 176.65211 * 9 8 7 12 12 H 1.08000 * 120.00133 * 119.99416 * 11 9 8 13 13 C 1.37880 * 119.99850 * 300.00186 * 11 9 8 14 14 N 1.31518 * 120.00018 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46855 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46846 * 119.99918 * 15 13 11 18 18 H 1.48495 * 109.47141 * 240.00051 * 15 13 11 19 19 C 1.53916 * 109.25388 * 296.63926 * 9 8 7 20 20 S 1.76748 * 118.49601 * 180.55849 * 6 5 4 21 21 O 1.42105 * 104.55456 * 306.52785 * 20 6 5 22 22 O 1.42098 * 104.55575 * 74.93178 * 20 6 5 23 23 H 1.09003 * 109.46931 * 270.02527 * 1 2 3 24 24 H 1.08998 * 109.46887 * 30.02339 * 1 2 3 25 25 H 1.08994 * 109.47203 * 150.02211 * 1 2 3 26 26 H 1.08004 * 119.92273 * 359.89647 * 3 2 1 27 27 H 1.07999 * 120.21695 * 179.66091 * 4 3 2 28 28 H 1.07997 * 119.75439 * 180.16349 * 5 4 3 29 29 H 1.00900 * 111.00078 * 155.03189 * 8 7 6 30 30 H 0.96997 * 119.99733 * 179.97438 * 14 13 11 31 31 H 1.09000 * 110.02951 * 310.21249 * 19 9 8 32 32 H 1.08998 * 110.10905 * 188.64762 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.1967 0.0000 4 6 3.5701 1.2095 0.0018 5 6 4.2628 0.0142 0.0106 6 6 3.5833 -1.1907 0.0150 7 6 2.1992 -1.2174 0.0006 8 7 1.4291 -2.3711 -0.0255 9 6 2.0244 -3.5749 0.5362 10 1 2.3205 -3.3874 1.5683 11 6 1.0209 -4.6985 0.4967 12 1 1.2404 -5.5994 -0.0571 13 6 -0.1776 -4.5763 1.1673 14 7 -0.4448 -3.4794 1.8419 15 14 -1.4219 -5.9688 1.1177 16 1 -0.8849 -7.0833 0.2963 17 1 -1.6806 -6.4507 2.4984 18 1 -2.6893 -5.4790 0.5187 19 6 3.2634 -3.9618 -0.2909 20 16 4.5219 -2.6881 0.0415 21 8 5.4182 -2.5671 -1.0546 22 8 4.9988 -2.7871 1.3764 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6400 2.1277 -0.0017 27 1 4.1050 2.1477 -0.0037 28 1 5.3427 0.0206 0.0147 29 1 0.5141 -2.2040 0.3656 30 1 -1.2881 -3.3933 2.3134 31 1 3.0150 -3.9739 -1.3521 32 1 3.6306 -4.9400 0.0195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214321497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:36 Heat of formation + Delta-G solvation = -67.362107 kcal Electronic energy + Delta-G solvation = -18756.607207 eV Core-core repulsion = 15808.069169 eV Total energy + Delta-G solvation = -2948.538038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87277 -38.20096 -37.74673 -36.99405 -34.55369 -33.86232 -32.19035 -29.66744 -28.10085 -27.29910 -24.37677 -22.87295 -21.76526 -19.71410 -19.04704 -18.49476 -17.63740 -17.35209 -17.00505 -16.69379 -16.29944 -15.55652 -15.21898 -14.95774 -14.58921 -14.27579 -13.86351 -13.60154 -13.32591 -13.19783 -13.12602 -13.06720 -13.02785 -12.90199 -12.78217 -12.27511 -12.20722 -12.01970 -11.48342 -11.29395 -10.92194 -10.72786 -10.02166 -8.57302 -8.36749 -6.51983 -0.80816 0.05948 0.50071 1.42056 1.46395 1.57031 1.85760 2.34819 2.55717 2.62020 2.83035 3.29380 3.53199 3.79023 3.84196 4.01470 4.17278 4.27647 4.35629 4.43534 4.58147 4.80193 4.83145 4.84368 5.03976 5.10762 5.29046 5.35082 5.54884 5.60463 5.69324 5.98996 6.37576 6.58258 6.68050 7.21803 8.72210 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.008718 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.739320 B = 3210.912303 C = 4293.511908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 C -0.038 4.038 4 C -0.182 4.182 5 C -0.022 4.022 6 C -0.719 4.719 7 C 0.217 3.783 8 N -0.642 5.642 9 C 0.223 3.777 10 H 0.009 0.991 11 C -0.532 4.532 12 H 0.081 0.919 13 C 0.024 3.976 14 N -0.921 5.921 15 Si 0.973 3.027 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.276 1.276 19 C -0.568 4.568 20 S 2.496 3.504 21 O -0.971 6.971 22 O -0.979 6.979 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.162 0.838 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.400 0.600 30 H 0.276 0.724 31 H 0.152 0.848 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 6.533 -3.679 7.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C -0.057 4.057 4 C -0.202 4.202 5 C -0.042 4.042 6 C -0.813 4.813 7 C 0.108 3.892 8 N -0.271 5.271 9 C 0.117 3.883 10 H 0.027 0.973 11 C -0.571 4.571 12 H 0.099 0.901 13 C -0.177 4.177 14 N -0.560 5.560 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.202 1.202 19 C -0.702 4.702 20 S 2.683 3.317 21 O -0.968 6.968 22 O -0.976 6.976 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.179 0.821 27 H 0.180 0.820 28 H 0.154 0.846 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.358 6.225 -3.953 7.742 hybrid contribution -1.529 -0.412 0.718 1.739 sum 0.829 5.813 -3.235 6.704 Atomic orbital electron populations 1.20681 0.89970 1.03290 1.02406 1.20361 0.97284 0.92416 1.08721 1.21357 0.94609 0.97405 0.92281 1.21321 0.94519 0.98102 1.06259 1.20786 0.99824 0.91316 0.92232 1.29394 1.03937 1.19335 1.28644 1.18588 0.90641 0.91501 0.88509 1.55449 1.10938 1.02629 1.58059 1.18844 0.91328 0.87898 0.90215 0.97344 1.21395 1.01600 1.01320 1.32763 0.90058 1.25883 0.99996 0.98696 0.93108 1.69691 1.25595 1.28093 1.32606 0.85259 0.78196 0.78848 0.77929 1.18830 1.20662 1.20188 1.30347 1.12155 1.16074 1.11577 1.05084 0.76003 0.76878 0.73715 1.93488 1.62230 1.86323 1.54737 1.93508 1.79609 1.86764 1.37698 0.91670 0.88574 0.92756 0.82077 0.81998 0.84614 0.76192 0.91418 0.83034 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 9.08 71.24 0.65 -2.69 16 2 C -0.18 -6.47 5.91 -19.56 -0.12 -6.58 16 3 C -0.04 -1.07 9.64 22.14 0.21 -0.86 16 4 C -0.18 -5.12 10.07 22.26 0.22 -4.90 16 5 C -0.02 -0.76 9.55 22.27 0.21 -0.55 16 6 C -0.72 -28.69 5.69 22.34 0.13 -28.56 16 7 C 0.22 8.97 6.30 38.53 0.24 9.21 16 8 N -0.64 -28.78 5.56 -323.12 -1.80 -30.58 16 9 C 0.22 10.43 2.32 44.73 0.10 10.53 16 10 H 0.01 0.47 8.06 -2.39 -0.02 0.45 16 11 C -0.53 -26.03 8.76 25.60 0.22 -25.81 16 12 H 0.08 3.79 7.75 -2.91 -0.02 3.77 16 13 C 0.02 1.18 5.27 84.65 0.45 1.63 16 14 N -0.92 -46.40 11.51 21.45 0.25 -46.16 16 15 Si 0.97 38.88 29.54 68.60 2.03 40.91 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 18 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 19 C -0.57 -21.68 6.08 72.29 0.44 -21.24 16 20 S 2.50 98.10 5.33 -56.49 -0.30 97.80 16 21 O -0.97 -39.62 17.86 -127.69 -2.28 -41.90 16 22 O -0.98 -43.82 17.96 -127.69 -2.29 -46.11 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.10 2.27 8.08 -2.39 -0.02 2.25 16 25 H 0.05 1.89 6.64 -2.39 -0.02 1.88 16 26 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 28 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.40 18.53 4.01 -89.69 -0.36 18.17 16 30 H 0.28 13.10 8.31 -92.71 -0.77 12.32 16 31 H 0.15 5.28 8.14 -2.39 -0.02 5.26 16 32 H 0.16 5.22 8.14 -2.39 -0.02 5.20 16 Total: -1.00 -63.38 279.18 -0.85 -64.23 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.78 Total: 31.62 kcal Atomic # 6 Polarization: -72.58 SS G_CDS: 2.76 Total: -69.81 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.55 Total: -76.73 kcal Atomic # 8 Polarization: -83.44 SS G_CDS: -4.57 Total: -88.01 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: 98.10 SS G_CDS: -0.30 Total: 97.80 kcal Total: -63.38 -0.85 -64.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214321497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.134 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds