Wall clock time and date at job start Mon Mar 30 2020 04:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38316 * 119.95013 * 2 1 4 4 C 1.38162 * 119.83621 * 180.47606 * 3 2 1 5 5 C 1.38308 * 120.32057 * 359.44553 * 4 3 2 6 6 C 1.38557 * 120.20519 * 0.13398 * 5 4 3 7 7 C 1.37827 * 119.95381 * 180.02562 * 2 1 3 8 8 N 1.39206 * 122.79255 * 181.05343 * 6 5 4 9 9 C 1.45945 * 123.22628 * 339.75199 * 8 6 5 10 10 H 1.08997 * 109.70563 * 294.97655 * 9 8 6 11 11 C 1.50700 * 109.58740 * 174.61675 * 9 8 6 12 12 H 1.07997 * 120.00204 * 240.71990 * 11 9 8 13 13 C 1.37874 * 120.00050 * 60.71792 * 11 9 8 14 14 N 1.31510 * 120.00449 * 179.97438 * 13 11 9 15 15 Si 1.86811 * 119.99905 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.46948 * 89.99731 * 15 13 11 17 17 H 1.48498 * 109.46905 * 209.99914 * 15 13 11 18 18 H 1.48495 * 109.46740 * 329.99663 * 15 13 11 19 19 C 1.53679 * 108.76507 * 54.83571 * 9 8 6 20 20 S 1.76523 * 119.03393 * 179.49162 * 5 4 3 21 21 O 1.42100 * 104.40088 * 280.98852 * 20 5 4 22 22 O 1.42099 * 104.40461 * 49.21335 * 20 5 4 23 23 H 1.08996 * 109.46930 * 90.00389 * 1 2 3 24 24 H 1.09006 * 109.47277 * 210.00379 * 1 2 3 25 25 H 1.08997 * 109.47122 * 330.00637 * 1 2 3 26 26 H 1.08002 * 120.07854 * 0.18991 * 3 2 1 27 27 H 1.08001 * 119.83532 * 179.72269 * 4 3 2 28 28 H 1.08004 * 119.80490 * 0.02562 * 7 2 1 29 29 H 0.97000 * 118.38772 * 159.74094 * 8 6 5 30 30 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.84391 * 175.96783 * 19 9 8 32 32 H 1.08991 * 109.91211 * 55.00745 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1985 0.0000 4 6 3.5791 1.1957 -0.0100 5 6 4.2750 0.0005 -0.0084 6 6 3.5910 -1.2044 0.0004 7 6 2.1952 -1.1942 -0.0005 8 7 4.2363 -2.4376 0.0240 9 6 5.6264 -2.6206 -0.3812 10 1 5.7309 -2.4044 -1.4444 11 6 6.0485 -4.0418 -0.1107 12 1 6.8628 -4.2431 0.5696 13 6 5.3952 -5.0851 -0.7317 14 7 5.7639 -6.3253 -0.4962 15 14 3.9871 -4.7369 -1.9090 16 1 4.5207 -4.5785 -3.2857 17 1 3.0250 -5.8675 -1.8780 18 1 3.2966 -3.4878 -1.4989 19 6 6.5084 -1.6581 0.4296 20 16 6.0397 0.0365 -0.0350 21 8 6.3675 0.2925 -1.3938 22 8 6.3901 0.9530 0.9929 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6580 2.1340 0.0031 27 1 4.1183 2.1315 -0.0145 28 1 1.6512 -2.1272 -0.0014 29 1 3.7376 -3.2134 0.3245 30 1 5.3040 -7.0593 -0.9328 31 1 7.5584 -1.8298 0.1925 32 1 6.3404 -1.8094 1.4957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214322754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:37 Heat of formation + Delta-G solvation = -36.549130 kcal Electronic energy + Delta-G solvation = -18582.424752 eV Core-core repulsion = 15635.222865 eV Total energy + Delta-G solvation = -2947.201887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38962 -36.81153 -36.34210 -35.45423 -33.08296 -32.25920 -31.17028 -28.25628 -27.09018 -26.08100 -22.31486 -22.00278 -20.47949 -18.38843 -17.64233 -17.28113 -16.40328 -15.93462 -15.38548 -15.03822 -14.62697 -14.14997 -13.91653 -13.83883 -13.53379 -13.26885 -12.86546 -12.30936 -12.18134 -11.89327 -11.74455 -11.63875 -11.53094 -11.39282 -11.29731 -11.06553 -10.40415 -10.27297 -10.10372 -9.58395 -9.31705 -9.02278 -8.76634 -7.10077 -6.54352 -4.66593 0.64075 1.29842 1.84583 3.04195 3.15511 3.21244 3.32727 3.84042 3.86743 4.04680 4.08703 4.85498 4.89621 4.96821 4.99863 5.28710 5.35478 5.48839 5.55329 5.58267 5.67603 5.80320 5.90055 6.14071 6.17862 6.31739 6.46419 6.54388 6.78235 6.92418 7.13146 7.86175 7.86732 8.24038 8.51064 9.00866 10.54891 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.009910 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.270695 B = 2824.879631 C = 4072.402637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.003 4.003 3 C -0.207 4.207 4 C 0.023 3.977 5 C -0.723 4.723 6 C 0.303 3.697 7 C -0.216 4.216 8 N -0.727 5.727 9 C 0.247 3.753 10 H 0.057 0.943 11 C -0.526 4.526 12 H 0.091 0.909 13 C 0.083 3.917 14 N -0.870 5.870 15 Si 0.851 3.149 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.230 1.230 19 C -0.585 4.585 20 S 2.484 3.516 21 O -0.949 6.949 22 O -0.958 6.958 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.402 0.598 30 H 0.273 0.727 31 H 0.142 0.858 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 9.424 1.229 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.004 4.004 3 C -0.228 4.228 4 C 0.003 3.997 5 C -0.817 4.817 6 C 0.191 3.809 7 C -0.239 4.239 8 N -0.354 5.354 9 C 0.145 3.855 10 H 0.075 0.925 11 C -0.564 4.564 12 H 0.109 0.891 13 C -0.125 4.125 14 N -0.504 5.504 15 Si 0.676 3.324 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.153 1.153 19 C -0.718 4.718 20 S 2.668 3.332 21 O -0.946 6.946 22 O -0.955 6.955 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.241 0.759 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.739 9.921 0.914 12.028 hybrid contribution -1.471 -1.001 -0.320 1.808 sum -8.211 8.920 0.595 12.138 Atomic orbital electron populations 1.20876 0.91420 1.02770 1.02442 1.19768 0.95498 0.92915 0.92219 1.20667 0.93746 0.97224 1.11136 1.20369 0.94433 0.95131 0.89772 1.29370 1.24985 0.97647 1.29684 1.17425 0.91566 0.85755 0.86145 1.20821 0.92463 0.98004 1.12620 1.47304 1.14023 1.05858 1.68197 1.18976 0.76583 0.96599 0.93387 0.92506 1.20913 1.19801 0.86250 1.29484 0.89091 1.25116 0.96996 0.94882 0.95536 1.69865 1.40414 0.98835 1.41301 0.87434 0.82805 0.79932 0.82269 1.19660 1.20951 1.15255 1.30441 1.10697 1.19088 1.11612 1.05550 0.74845 0.77854 0.74944 1.93554 1.82990 1.84083 1.33960 1.93518 1.82791 1.60188 1.58989 0.90879 0.91417 0.91358 0.86126 0.85810 0.86017 0.75949 0.91692 0.84035 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.01 36.01 0.36 -0.89 16 2 C 0.00 -0.04 5.87 -104.74 -0.61 -0.65 16 3 C -0.21 -3.01 9.71 -39.58 -0.38 -3.40 16 4 C 0.02 0.37 9.53 -39.58 -0.38 -0.01 16 5 C -0.72 -13.18 5.71 -39.44 -0.23 -13.41 16 6 C 0.30 5.57 6.47 -83.89 -0.54 5.03 16 7 C -0.22 -3.54 9.43 -39.23 -0.37 -3.91 16 8 N -0.73 -14.05 3.11 -53.34 -0.17 -14.22 16 9 C 0.25 5.12 2.12 -69.03 -0.15 4.97 16 10 H 0.06 1.22 7.56 -51.93 -0.39 0.83 16 11 C -0.53 -12.73 9.18 -34.44 -0.32 -13.05 16 12 H 0.09 2.37 7.99 -52.49 -0.42 1.95 16 13 C 0.08 2.08 5.40 -17.82 -0.10 1.98 16 14 N -0.87 -23.55 13.96 55.43 0.77 -22.78 16 15 Si 0.85 18.38 26.26 -169.99 -4.46 13.92 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.23 -4.54 5.02 56.52 0.28 -4.26 16 19 C -0.59 -10.32 5.99 37.51 0.22 -10.09 16 20 S 2.48 45.00 5.35 -107.50 -0.58 44.43 16 21 O -0.95 -19.55 17.96 -57.50 -1.03 -20.58 16 22 O -0.96 -18.59 17.79 -57.50 -1.02 -19.62 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.40 7.61 6.46 -40.82 -0.26 7.35 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.14 2.23 8.14 -51.93 -0.42 1.80 16 32 H 0.14 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -30.52 278.17 -8.49 -39.00 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.70 Total: 9.07 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -2.49 Total: -33.42 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.61 Total: -36.99 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -2.06 Total: -40.20 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.46 Total: 13.92 kcal Atomic # 16 Polarization: 45.00 SS G_CDS: -0.58 Total: 44.43 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.52 -8.49 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214322754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.455 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds