Wall clock time and date at job start Mon Mar 30 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38316 * 119.95013 * 2 1 4 4 C 1.38162 * 119.83621 * 180.47606 * 3 2 1 5 5 C 1.38308 * 120.32057 * 359.44553 * 4 3 2 6 6 C 1.38557 * 120.20519 * 0.13398 * 5 4 3 7 7 C 1.37827 * 119.95381 * 180.02562 * 2 1 3 8 8 N 1.39206 * 122.79255 * 181.05343 * 6 5 4 9 9 C 1.45945 * 123.22628 * 339.75199 * 8 6 5 10 10 H 1.08997 * 109.70563 * 294.97655 * 9 8 6 11 11 C 1.50700 * 109.58740 * 174.61675 * 9 8 6 12 12 H 1.07997 * 120.00204 * 240.71990 * 11 9 8 13 13 C 1.37874 * 120.00050 * 60.71792 * 11 9 8 14 14 N 1.31510 * 120.00449 * 179.97438 * 13 11 9 15 15 Si 1.86811 * 119.99905 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.46948 * 89.99731 * 15 13 11 17 17 H 1.48498 * 109.46905 * 209.99914 * 15 13 11 18 18 H 1.48495 * 109.46740 * 329.99663 * 15 13 11 19 19 C 1.53679 * 108.76507 * 54.83571 * 9 8 6 20 20 S 1.76523 * 119.03393 * 179.49162 * 5 4 3 21 21 O 1.42100 * 104.40088 * 280.98852 * 20 5 4 22 22 O 1.42099 * 104.40461 * 49.21335 * 20 5 4 23 23 H 1.08996 * 109.46930 * 90.00389 * 1 2 3 24 24 H 1.09006 * 109.47277 * 210.00379 * 1 2 3 25 25 H 1.08997 * 109.47122 * 330.00637 * 1 2 3 26 26 H 1.08002 * 120.07854 * 0.18991 * 3 2 1 27 27 H 1.08001 * 119.83532 * 179.72269 * 4 3 2 28 28 H 1.08004 * 119.80490 * 0.02562 * 7 2 1 29 29 H 0.97000 * 118.38772 * 159.74094 * 8 6 5 30 30 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.84391 * 175.96783 * 19 9 8 32 32 H 1.08991 * 109.91211 * 55.00745 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1985 0.0000 4 6 3.5791 1.1957 -0.0100 5 6 4.2750 0.0005 -0.0084 6 6 3.5910 -1.2044 0.0004 7 6 2.1952 -1.1942 -0.0005 8 7 4.2363 -2.4376 0.0240 9 6 5.6264 -2.6206 -0.3812 10 1 5.7309 -2.4044 -1.4444 11 6 6.0485 -4.0418 -0.1107 12 1 6.8628 -4.2431 0.5696 13 6 5.3952 -5.0851 -0.7317 14 7 5.7639 -6.3253 -0.4962 15 14 3.9871 -4.7369 -1.9090 16 1 4.5207 -4.5785 -3.2857 17 1 3.0250 -5.8675 -1.8780 18 1 3.2966 -3.4878 -1.4989 19 6 6.5084 -1.6581 0.4296 20 16 6.0397 0.0365 -0.0350 21 8 6.3675 0.2925 -1.3938 22 8 6.3901 0.9530 0.9929 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6580 2.1340 0.0031 27 1 4.1183 2.1315 -0.0145 28 1 1.6512 -2.1272 -0.0014 29 1 3.7376 -3.2134 0.3245 30 1 5.3040 -7.0593 -0.9328 31 1 7.5584 -1.8298 0.1925 32 1 6.3404 -1.8094 1.4957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214322754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:36 Heat of formation + Delta-G solvation = -58.264142 kcal Electronic energy + Delta-G solvation = -18583.366386 eV Core-core repulsion = 15635.222865 eV Total energy + Delta-G solvation = -2948.143521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68684 -38.29312 -37.84762 -36.98664 -34.77433 -33.52836 -32.65398 -29.64070 -28.20270 -27.73780 -23.67783 -23.38411 -21.92168 -19.80109 -19.40360 -18.69396 -17.85944 -17.34850 -16.91710 -16.58446 -16.19482 -15.38585 -15.24144 -15.18298 -14.92206 -14.70082 -14.29853 -13.56106 -13.32899 -13.19795 -13.12864 -13.11688 -13.05783 -12.95713 -12.80187 -12.33743 -12.02176 -11.95754 -11.60935 -11.16180 -10.98979 -10.68861 -9.97025 -8.50461 -8.47556 -6.63577 -0.81096 0.04746 0.57974 1.30736 1.39982 1.48988 1.91248 2.23508 2.35864 2.59308 2.65529 3.04664 3.39045 3.76267 3.82893 3.95253 4.09399 4.31512 4.37506 4.44841 4.59621 4.76547 4.85593 4.91857 4.98948 5.09583 5.14844 5.21104 5.29699 5.63371 5.92757 6.01161 6.35598 6.55558 6.72200 7.07946 8.65170 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.009910 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.270695 B = 2824.879631 C = 4072.402637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.001 3.999 3 C -0.197 4.197 4 C 0.002 3.998 5 C -0.739 4.739 6 C 0.284 3.716 7 C -0.227 4.227 8 N -0.735 5.735 9 C 0.250 3.750 10 H 0.050 0.950 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.036 3.964 14 N -0.919 5.919 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.284 1.284 18 H -0.201 1.201 19 C -0.584 4.584 20 S 2.506 3.494 21 O -0.976 6.976 22 O -0.971 6.971 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.156 0.844 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.404 0.596 30 H 0.274 0.726 31 H 0.156 0.844 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 11.476 1.162 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.000 4.000 3 C -0.218 4.218 4 C -0.018 4.018 5 C -0.834 4.834 6 C 0.174 3.826 7 C -0.250 4.250 8 N -0.363 5.363 9 C 0.147 3.853 10 H 0.067 0.933 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.167 4.167 14 N -0.556 5.556 15 Si 0.731 3.269 16 H -0.210 1.210 17 H -0.210 1.210 18 H -0.123 1.123 19 C -0.717 4.717 20 S 2.692 3.308 21 O -0.973 6.973 22 O -0.968 6.968 23 H 0.105 0.895 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.174 0.826 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.242 0.758 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.408 12.020 0.861 15.288 hybrid contribution -0.680 -1.513 -0.232 1.675 sum -10.088 10.507 0.629 14.580 Atomic orbital electron populations 1.20974 0.88225 1.04384 1.03758 1.20274 0.97791 0.92023 0.89907 1.21150 0.93085 0.98920 1.08602 1.20739 0.95750 0.95050 0.90248 1.29328 1.24463 0.98569 1.31066 1.17562 0.92547 0.84958 0.87490 1.21105 0.91660 0.99648 1.12628 1.46738 1.13323 1.06617 1.69670 1.18691 0.77988 0.95056 0.93588 0.93269 1.21024 1.18914 0.88258 1.28406 0.92050 1.25826 0.99348 0.94497 0.97032 1.69984 1.42375 0.99908 1.43329 0.86560 0.80230 0.80855 0.79270 1.20968 1.20960 1.12272 1.30433 1.11197 1.18145 1.11971 1.04740 0.74887 0.77293 0.73887 1.93514 1.83796 1.84565 1.35417 1.93492 1.83391 1.60737 1.59207 0.89469 0.90488 0.89217 0.82606 0.84484 0.84700 0.75827 0.91702 0.82601 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 10.01 71.24 0.71 -1.15 16 2 C 0.00 0.03 5.87 -19.94 -0.12 -0.09 16 3 C -0.20 -4.91 9.71 22.27 0.22 -4.70 16 4 C 0.00 0.05 9.53 22.27 0.21 0.26 16 5 C -0.74 -25.70 5.71 22.36 0.13 -25.57 16 6 C 0.28 9.91 6.47 38.37 0.25 10.15 16 7 C -0.23 -6.75 9.43 22.50 0.21 -6.54 16 8 N -0.73 -27.62 3.11 -322.66 -1.00 -28.62 16 9 C 0.25 10.36 2.12 44.58 0.09 10.45 16 10 H 0.05 2.11 7.56 -2.39 -0.02 2.09 16 11 C -0.53 -26.12 9.18 25.60 0.24 -25.88 16 12 H 0.06 3.33 7.99 -2.91 -0.02 3.31 16 13 C 0.04 1.85 5.40 84.65 0.46 2.30 16 14 N -0.92 -51.33 13.96 21.45 0.30 -51.03 16 15 Si 0.91 38.16 26.26 68.60 1.80 39.96 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.20 -7.46 5.02 99.48 0.50 -6.96 16 19 C -0.58 -20.49 5.99 72.21 0.43 -20.05 16 20 S 2.51 88.95 5.35 -56.49 -0.30 88.65 16 21 O -0.98 -39.76 17.96 -127.68 -2.29 -42.05 16 22 O -0.97 -36.79 17.79 -127.68 -2.27 -39.06 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 25 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 26 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 27 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.40 14.85 6.46 -92.71 -0.60 14.25 16 30 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.16 4.91 8.14 -2.39 -0.02 4.89 16 32 H 0.15 4.82 8.14 -2.39 -0.02 4.80 16 Total: -1.00 -65.97 278.17 -0.60 -66.57 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.34 Total: 26.40 kcal Atomic # 6 Polarization: -63.65 SS G_CDS: 2.83 Total: -60.82 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -0.70 Total: -79.65 kcal Atomic # 8 Polarization: -76.55 SS G_CDS: -4.56 Total: -81.11 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.80 Total: 39.96 kcal Atomic # 16 Polarization: 88.95 SS G_CDS: -0.30 Total: 88.65 kcal Total: -65.97 -0.60 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214322754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.303 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds