Wall clock time and date at job start Mon Mar 30 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38313 * 119.94843 * 2 1 4 4 C 1.38163 * 119.83292 * 179.81020 * 3 2 1 5 5 C 1.38312 * 120.32506 * 0.07926 * 4 3 2 6 6 C 1.38554 * 120.20481 * 0.26633 * 5 4 3 7 7 C 1.37813 * 119.95214 * 179.97438 * 2 1 3 8 8 N 1.39207 * 122.81541 * 178.82973 * 6 5 4 9 9 C 1.46091 * 123.27027 * 19.82527 * 8 6 5 10 10 H 1.09000 * 109.57355 * 65.04308 * 9 8 6 11 11 C 1.50702 * 109.68485 * 185.53202 * 9 8 6 12 12 H 1.07997 * 120.00240 * 119.22806 * 11 9 8 13 13 C 1.37872 * 119.99873 * 299.22613 * 11 9 8 14 14 N 1.31518 * 120.00074 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00315 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47352 * 89.99746 * 15 13 11 17 17 H 1.48501 * 109.47548 * 210.00085 * 15 13 11 18 18 H 1.48500 * 109.46769 * 330.00124 * 15 13 11 19 19 C 1.53687 * 108.67379 * 305.31902 * 9 8 6 20 20 S 1.76524 * 119.03163 * 180.28558 * 5 4 3 21 21 O 1.42102 * 104.40312 * 79.33337 * 20 5 4 22 22 O 1.42095 * 104.53714 * 311.15410 * 20 5 4 23 23 H 1.09001 * 109.46843 * 89.99764 * 1 2 3 24 24 H 1.08994 * 109.47132 * 209.99828 * 1 2 3 25 25 H 1.08997 * 109.47296 * 330.00239 * 1 2 3 26 26 H 1.07995 * 120.08138 * 359.83424 * 3 2 1 27 27 H 1.08005 * 119.83518 * 180.09683 * 4 3 2 28 28 H 1.08004 * 119.81149 * 359.97438 * 7 2 1 29 29 H 0.96993 * 118.38517 * 199.85558 * 8 6 5 30 30 H 0.97001 * 119.99876 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.85365 * 305.03274 * 19 9 8 32 32 H 1.08997 * 109.85160 * 184.09944 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1985 0.0000 4 6 3.5791 1.1957 0.0040 5 6 4.2751 0.0004 0.0063 6 6 3.5910 -1.2045 -0.0009 7 6 2.1951 -1.1941 0.0005 8 7 4.2359 -2.4380 -0.0229 9 6 5.6299 -2.6208 0.3740 10 1 5.7393 -2.3997 1.4358 11 6 6.0523 -4.0421 0.1046 12 1 6.8622 -4.2441 -0.5807 13 6 5.4048 -5.0845 0.7330 14 7 4.4188 -4.8385 1.5680 15 14 5.9287 -6.8463 0.3997 16 1 6.9806 -7.2419 1.3703 17 1 4.7571 -7.7471 0.5450 18 1 6.4649 -6.9503 -0.9812 19 6 6.5050 -1.6591 -0.4453 20 16 6.0399 0.0367 0.0190 21 8 6.3783 0.2956 1.3747 22 8 6.3853 0.9513 -1.0121 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6580 2.1340 -0.0027 27 1 4.1183 2.1315 0.0056 28 1 1.6512 -2.1272 0.0014 29 1 3.7351 -3.2149 -0.3168 30 1 3.9630 -5.5720 2.0098 31 1 6.3278 -1.8131 -1.5098 32 1 7.5569 -1.8301 -0.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214322803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:38 Heat of formation + Delta-G solvation = -51.106342 kcal Electronic energy + Delta-G solvation = -18440.429535 eV Core-core repulsion = 15492.596400 eV Total energy + Delta-G solvation = -2947.833135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11057 -36.57506 -36.10633 -35.30907 -33.01869 -32.03044 -30.89185 -27.89342 -26.88829 -25.84426 -22.31364 -21.93005 -20.31942 -18.19012 -17.43145 -17.08041 -15.94446 -15.62810 -15.24876 -14.97775 -14.61629 -14.00314 -13.75328 -13.66840 -13.38503 -12.94919 -12.61635 -12.10786 -11.96788 -11.77652 -11.56043 -11.45328 -11.36899 -11.23776 -11.15986 -10.99047 -10.57067 -10.31942 -9.97635 -9.45704 -9.29910 -8.95171 -8.58012 -6.83436 -6.50176 -4.66316 0.79948 1.50625 2.08096 3.05707 3.14923 3.16651 3.49539 4.03221 4.06436 4.17262 4.24609 4.96056 5.03717 5.14196 5.18642 5.46794 5.51824 5.67960 5.70526 5.72199 5.88141 5.96974 6.10311 6.33377 6.39184 6.54595 6.66005 6.92911 6.98586 7.33326 7.43465 7.51845 8.16613 8.49801 8.61115 9.05774 10.54948 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.007996 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.053147 B = 3500.899865 C = 4687.590265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.004 4.004 3 C -0.214 4.214 4 C 0.023 3.977 5 C -0.730 4.730 6 C 0.311 3.689 7 C -0.215 4.215 8 N -0.702 5.702 9 C 0.280 3.720 10 H 0.060 0.940 11 C -0.533 4.533 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.869 5.869 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.270 1.270 19 C -0.596 4.596 20 S 2.485 3.515 21 O -0.951 6.951 22 O -0.963 6.963 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.408 0.592 30 H 0.271 0.729 31 H 0.131 0.869 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 5.128 -3.639 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.005 4.005 3 C -0.236 4.236 4 C 0.003 3.997 5 C -0.825 4.825 6 C 0.196 3.804 7 C -0.238 4.238 8 N -0.323 5.323 9 C 0.177 3.823 10 H 0.077 0.923 11 C -0.573 4.573 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.195 1.195 19 C -0.730 4.730 20 S 2.670 3.330 21 O -0.948 6.948 22 O -0.961 6.961 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.244 0.756 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.666 5.734 -3.230 7.533 hybrid contribution -0.640 -1.848 -0.346 1.985 sum -4.305 3.886 -3.576 6.814 Atomic orbital electron populations 1.20857 0.91653 1.02683 1.02194 1.19723 0.95322 0.92969 0.92513 1.20591 0.93708 0.97098 1.12153 1.20314 0.94411 0.95011 0.89965 1.29234 1.24603 0.97738 1.30897 1.17442 0.91542 0.85841 0.85530 1.20805 0.92533 0.97884 1.12577 1.46367 1.13788 1.05368 1.66806 1.18617 0.75966 0.94523 0.93155 0.92254 1.21080 1.19249 0.88490 1.28455 0.90621 1.25203 0.94407 1.00316 0.93642 1.69988 1.21050 1.33141 1.26144 0.86359 0.78490 0.82807 0.79126 1.20038 1.20842 1.19454 1.30598 1.10816 1.20056 1.11519 1.05429 0.74976 0.77717 0.74836 1.93545 1.82942 1.84015 1.34289 1.93500 1.83085 1.60483 1.58987 0.91055 0.91456 0.91563 0.86426 0.86136 0.86004 0.75551 0.91897 0.85050 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.01 36.01 0.36 -1.02 16 2 C 0.00 -0.06 5.87 -104.75 -0.61 -0.68 16 3 C -0.21 -3.43 9.71 -39.58 -0.38 -3.82 16 4 C 0.02 0.41 9.52 -39.58 -0.38 0.03 16 5 C -0.73 -14.41 5.72 -39.44 -0.23 -14.63 16 6 C 0.31 6.25 6.52 -83.89 -0.55 5.70 16 7 C -0.21 -3.87 9.42 -39.23 -0.37 -4.24 16 8 N -0.70 -14.88 4.88 -53.24 -0.26 -15.14 16 9 C 0.28 6.25 2.63 -68.95 -0.18 6.06 16 10 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 11 C -0.53 -12.63 8.61 -34.44 -0.30 -12.92 16 12 H 0.08 1.73 7.75 -52.49 -0.41 1.32 16 13 C 0.07 1.72 5.18 -17.82 -0.09 1.63 16 14 N -0.87 -21.83 12.52 55.43 0.69 -21.13 16 15 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 C -0.60 -11.08 5.99 37.51 0.22 -10.85 16 20 S 2.49 48.16 5.35 -107.50 -0.58 47.59 16 21 O -0.95 -21.05 17.96 -57.52 -1.03 -22.08 16 22 O -0.96 -19.70 17.80 -57.52 -1.02 -20.73 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.41 8.72 7.69 -40.82 -0.31 8.41 16 30 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.13 2.23 8.14 -51.93 -0.42 1.81 16 32 H 0.14 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 285.19 15.07 4.30 4.30 Total: -1.00 -29.33 285.19 -9.08 -38.41 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.65 Total: 9.82 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: -2.50 Total: -34.74 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.43 Total: -36.27 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -2.06 Total: -42.81 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 48.16 SS G_CDS: -0.58 Total: 47.59 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.33 -9.08 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214322803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.695 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds