Wall clock time and date at job start Mon Mar 30 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38313 * 119.94843 * 2 1 4 4 C 1.38163 * 119.83292 * 179.81020 * 3 2 1 5 5 C 1.38312 * 120.32506 * 0.07926 * 4 3 2 6 6 C 1.38554 * 120.20481 * 0.26633 * 5 4 3 7 7 C 1.37813 * 119.95214 * 179.97438 * 2 1 3 8 8 N 1.39207 * 122.81541 * 178.82973 * 6 5 4 9 9 C 1.46091 * 123.27027 * 19.82527 * 8 6 5 10 10 H 1.09000 * 109.57355 * 65.04308 * 9 8 6 11 11 C 1.50702 * 109.68485 * 185.53202 * 9 8 6 12 12 H 1.07997 * 120.00240 * 119.22806 * 11 9 8 13 13 C 1.37872 * 119.99873 * 299.22613 * 11 9 8 14 14 N 1.31518 * 120.00074 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00315 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47352 * 89.99746 * 15 13 11 17 17 H 1.48501 * 109.47548 * 210.00085 * 15 13 11 18 18 H 1.48500 * 109.46769 * 330.00124 * 15 13 11 19 19 C 1.53687 * 108.67379 * 305.31902 * 9 8 6 20 20 S 1.76524 * 119.03163 * 180.28558 * 5 4 3 21 21 O 1.42102 * 104.40312 * 79.33337 * 20 5 4 22 22 O 1.42095 * 104.53714 * 311.15410 * 20 5 4 23 23 H 1.09001 * 109.46843 * 89.99764 * 1 2 3 24 24 H 1.08994 * 109.47132 * 209.99828 * 1 2 3 25 25 H 1.08997 * 109.47296 * 330.00239 * 1 2 3 26 26 H 1.07995 * 120.08138 * 359.83424 * 3 2 1 27 27 H 1.08005 * 119.83518 * 180.09683 * 4 3 2 28 28 H 1.08004 * 119.81149 * 359.97438 * 7 2 1 29 29 H 0.96993 * 118.38517 * 199.85558 * 8 6 5 30 30 H 0.97001 * 119.99876 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.85365 * 305.03274 * 19 9 8 32 32 H 1.08997 * 109.85160 * 184.09944 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1985 0.0000 4 6 3.5791 1.1957 0.0040 5 6 4.2751 0.0004 0.0063 6 6 3.5910 -1.2045 -0.0009 7 6 2.1951 -1.1941 0.0005 8 7 4.2359 -2.4380 -0.0229 9 6 5.6299 -2.6208 0.3740 10 1 5.7393 -2.3997 1.4358 11 6 6.0523 -4.0421 0.1046 12 1 6.8622 -4.2441 -0.5807 13 6 5.4048 -5.0845 0.7330 14 7 4.4188 -4.8385 1.5680 15 14 5.9287 -6.8463 0.3997 16 1 6.9806 -7.2419 1.3703 17 1 4.7571 -7.7471 0.5450 18 1 6.4649 -6.9503 -0.9812 19 6 6.5050 -1.6591 -0.4453 20 16 6.0399 0.0367 0.0190 21 8 6.3783 0.2956 1.3747 22 8 6.3853 0.9513 -1.0121 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6580 2.1340 -0.0027 27 1 4.1183 2.1315 0.0056 28 1 1.6512 -2.1272 0.0014 29 1 3.7351 -3.2149 -0.3168 30 1 3.9630 -5.5720 2.0098 31 1 6.3278 -1.8131 -1.5098 32 1 7.5569 -1.8301 -0.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214322803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:38 Heat of formation + Delta-G solvation = -71.262312 kcal Electronic energy + Delta-G solvation = -18441.303564 eV Core-core repulsion = 15492.596400 eV Total energy + Delta-G solvation = -2948.707163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52387 -38.17345 -37.70254 -36.94988 -34.66017 -33.39647 -32.45618 -29.37282 -28.10008 -27.56218 -23.86844 -23.32670 -21.83483 -19.71281 -19.15164 -18.59793 -17.45875 -17.20357 -16.86593 -16.61564 -16.22708 -15.35493 -15.19591 -15.02424 -14.78494 -14.34599 -14.20018 -13.42428 -13.27023 -13.12726 -13.09027 -13.06279 -12.92139 -12.87930 -12.77469 -12.30904 -12.16556 -12.01336 -11.50567 -11.06917 -10.91614 -10.68411 -9.92302 -8.36604 -8.31611 -6.53662 -0.74785 0.11463 0.67459 1.42336 1.46318 1.55151 1.96533 2.34501 2.55034 2.65579 2.71442 3.19564 3.47937 3.83225 3.91687 3.99793 4.16471 4.41928 4.43377 4.53240 4.66027 4.82122 4.87688 4.99745 5.15943 5.19323 5.23461 5.33716 5.60581 5.67512 5.72315 6.03617 6.48231 6.75487 6.98387 7.21582 8.73593 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.007996 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.053147 B = 3500.899865 C = 4687.590265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.001 3.999 3 C -0.205 4.205 4 C 0.001 3.999 5 C -0.748 4.748 6 C 0.289 3.711 7 C -0.231 4.231 8 N -0.710 5.710 9 C 0.277 3.723 10 H 0.022 0.978 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.030 3.970 14 N -0.899 5.899 15 Si 0.968 3.032 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.587 4.587 20 S 2.503 3.497 21 O -0.984 6.984 22 O -0.974 6.974 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.404 0.596 30 H 0.270 0.730 31 H 0.150 0.850 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 5.634 -4.613 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.001 4.001 3 C -0.226 4.226 4 C -0.018 4.018 5 C -0.844 4.844 6 C 0.176 3.824 7 C -0.254 4.254 8 N -0.333 5.333 9 C 0.174 3.826 10 H 0.040 0.960 11 C -0.586 4.586 12 H 0.101 0.899 13 C -0.174 4.174 14 N -0.535 5.535 15 Si 0.793 3.207 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.721 4.721 20 S 2.690 3.310 21 O -0.981 6.981 22 O -0.971 6.971 23 H 0.109 0.891 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.173 0.827 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.828 6.281 -4.210 8.971 hybrid contribution -0.375 -1.897 -0.042 1.935 sum -5.203 4.383 -4.253 8.023 Atomic orbital electron populations 1.20950 0.88290 1.04051 1.03830 1.20243 0.97738 0.91994 0.90093 1.21087 0.93079 0.98772 1.09664 1.20712 0.95765 0.94968 0.90395 1.29267 1.24472 0.98513 1.32160 1.17669 0.92579 0.85385 0.86729 1.21039 0.91875 0.99310 1.13152 1.46026 1.13362 1.05775 1.68102 1.18363 0.77385 0.94937 0.91925 0.96013 1.21392 1.19432 0.89291 1.28438 0.89950 1.25904 0.94375 1.03744 0.93426 1.70098 1.22184 1.33976 1.27235 0.85396 0.77797 0.78502 0.79030 1.20263 1.20893 1.18687 1.30517 1.11421 1.18162 1.12024 1.04756 0.74837 0.77610 0.73759 1.93497 1.83705 1.84782 1.36113 1.93474 1.83484 1.61183 1.58955 0.89059 0.91008 0.89356 0.82679 0.84653 0.85503 0.76079 0.92037 0.83202 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 10.01 71.24 0.71 -1.56 16 2 C 0.00 0.02 5.87 -19.95 -0.12 -0.10 16 3 C -0.21 -5.98 9.71 22.27 0.22 -5.76 16 4 C 0.00 0.04 9.52 22.27 0.21 0.25 16 5 C -0.75 -29.48 5.72 22.36 0.13 -29.35 16 6 C 0.29 11.68 6.52 38.37 0.25 11.93 16 7 C -0.23 -8.15 9.42 22.50 0.21 -7.94 16 8 N -0.71 -30.80 4.88 -322.34 -1.57 -32.37 16 9 C 0.28 12.66 2.63 44.55 0.12 12.78 16 10 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 11 C -0.55 -26.05 8.61 25.60 0.22 -25.83 16 12 H 0.08 3.72 7.75 -2.91 -0.02 3.69 16 13 C 0.03 1.44 5.18 84.65 0.44 1.87 16 14 N -0.90 -46.14 12.52 21.45 0.27 -45.87 16 15 Si 0.97 38.41 29.54 68.60 2.03 40.43 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 19 C -0.59 -21.80 5.99 72.21 0.43 -21.36 16 20 S 2.50 97.60 5.35 -56.49 -0.30 97.30 16 21 O -0.98 -44.50 17.96 -127.67 -2.29 -46.79 16 22 O -0.97 -39.37 17.80 -127.67 -2.27 -41.64 16 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 25 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 26 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.40 17.77 7.69 -92.71 -0.71 17.06 16 30 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 31 H 0.15 4.98 8.14 -2.39 -0.02 4.96 16 32 H 0.16 5.07 8.14 -2.39 -0.02 5.05 16 Total: -1.00 -62.99 285.19 -0.89 -63.88 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.43 Total: 30.13 kcal Atomic # 6 Polarization: -67.89 SS G_CDS: 2.82 Total: -65.06 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.30 Total: -78.24 kcal Atomic # 8 Polarization: -83.87 SS G_CDS: -4.56 Total: -88.44 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 97.60 SS G_CDS: -0.30 Total: 97.30 kcal Total: -62.99 -0.89 -63.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214322803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.384 kcal (2) G-P(sol) polarization free energy of solvation -62.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds