Wall clock time and date at job start Mon Mar 30 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48508 * 109.47181 * 239.99381 * 3 2 1 5 5 H 1.48496 * 109.47538 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47141 * 119.99768 * 3 2 1 7 7 C 1.38953 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00456 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00178 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99805 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00359 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47090 * 180.02562 * 12 10 9 14 14 N 1.28395 * 119.09545 * 270.27620 * 13 12 10 15 15 C 1.31453 * 122.25521 * 180.25540 * 14 13 12 16 16 C 1.47763 * 119.89816 * 179.74591 * 15 14 13 17 17 O 1.21463 * 120.00071 * 179.72370 * 16 15 14 18 18 O 1.34720 * 119.99998 * 359.72394 * 16 15 14 19 19 C 1.41622 * 120.20033 * 359.47054 * 15 14 13 20 20 C 1.36308 * 118.23773 * 0.25114 * 19 15 14 21 21 C 1.34601 * 119.10162 * 90.00034 * 13 12 10 22 22 O 1.21977 * 120.21885 * 0.04348 * 21 13 12 23 23 H 0.96996 * 119.99827 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00596 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47441 * 59.99710 * 12 10 9 26 26 H 1.09003 * 109.47325 * 299.99634 * 12 10 9 27 27 H 0.96700 * 117.00126 * 180.02562 * 18 16 15 28 28 H 1.08006 * 120.87606 * 180.28128 * 19 15 14 29 29 H 1.08000 * 121.02949 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0011 13 7 2.1955 -5.9765 0.0016 14 7 2.6053 -6.4481 -1.1201 15 6 3.4547 -7.4487 -1.1921 16 6 3.8874 -7.9540 -2.5115 17 8 4.6760 -8.8752 -2.5803 18 8 3.4073 -7.3929 -3.6383 19 6 3.9608 -8.0402 -0.0090 20 6 3.5392 -7.5471 1.1898 21 6 2.6209 -6.4736 1.1779 22 8 2.2159 -6.0006 2.2268 23 1 -0.4850 0.8400 -0.0004 24 1 0.3532 -2.3907 0.0005 25 1 0.6165 -4.9209 -0.8886 26 1 0.6172 -4.9205 0.8914 27 1 3.7191 -7.7577 -4.4778 28 1 4.6626 -8.8599 -0.0555 29 1 3.8965 -7.9639 2.1199 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229617414.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:53 Heat of formation + Delta-G solvation = -86.283724 kcal Electronic energy + Delta-G solvation = -19651.730933 eV Core-core repulsion = 16156.079178 eV Total energy + Delta-G solvation = -3495.651755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.17815 -40.17365 -38.24220 -37.72310 -36.32637 -34.88119 -34.00876 -31.70440 -31.40120 -29.00239 -25.94913 -24.97783 -23.83111 -22.50272 -19.87255 -19.18978 -18.30574 -17.69947 -17.59196 -17.04843 -16.65153 -15.90725 -15.77289 -15.22680 -14.51067 -14.25599 -14.11009 -13.84352 -13.66669 -13.22401 -13.05143 -12.60151 -11.91911 -11.73128 -11.65748 -11.60758 -11.11517 -11.02707 -10.74390 -10.51842 -10.33361 -9.80967 -9.65247 -8.92226 -8.41281 -8.13643 -6.54393 -3.96109 0.38577 0.93023 1.98059 2.42704 2.76787 3.12312 3.20631 3.24860 3.42750 3.63698 3.97550 4.07607 4.49258 4.64253 4.72384 4.96401 5.08998 5.40539 5.41368 5.53816 5.55659 5.79983 5.84824 6.06108 6.21607 7.43808 7.49053 7.66454 7.87212 7.98080 8.40906 9.01672 9.32542 9.81375 10.62370 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004782 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.734773 B = 5853.540456 C = 6407.846884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.545 5.545 10 C 0.426 3.574 11 O -0.587 6.587 12 C 0.092 3.908 13 N -0.299 5.299 14 N -0.121 5.121 15 C 0.000 4.000 16 C 0.569 3.431 17 O -0.510 6.510 18 O -0.493 6.493 19 C -0.034 4.034 20 C -0.187 4.187 21 C 0.486 3.514 22 O -0.509 6.509 23 H 0.275 0.725 24 H 0.396 0.604 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.416 0.584 28 H 0.162 0.838 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -14.779 -4.032 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.180 5.180 10 C 0.210 3.790 11 O -0.472 6.472 12 C -0.032 4.032 13 N -0.121 5.121 14 N 0.044 4.956 15 C -0.167 4.167 16 C 0.410 3.590 17 O -0.397 6.397 18 O -0.302 6.302 19 C -0.056 4.056 20 C -0.216 4.216 21 C 0.285 3.715 22 O -0.385 6.385 23 H 0.085 0.915 24 H 0.229 0.771 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.275 0.725 28 H 0.180 0.820 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.702 -13.832 -3.547 14.381 hybrid contribution 0.449 0.247 -0.007 0.513 sum 2.151 -13.585 -3.555 14.207 Atomic orbital electron populations 1.69594 1.05987 1.28699 1.49223 1.25308 0.95689 0.99887 0.96659 0.85862 0.78804 0.80036 0.79231 1.19730 1.20777 1.19736 1.19675 0.93447 0.81835 1.48314 0.87772 1.41705 1.09350 1.04209 1.62777 1.19582 0.88438 0.84576 0.86363 1.90572 1.13454 1.86662 1.56518 1.21978 0.90322 0.84100 1.06803 1.46478 1.35466 1.27727 1.02436 1.71124 1.05981 1.05544 1.12955 1.20269 1.04232 0.99455 0.92717 1.19591 0.77051 0.78832 0.83506 1.90917 1.33079 1.28231 1.87426 1.84690 1.67475 1.61183 1.16894 1.22019 0.95790 0.97789 0.90042 1.22593 1.00759 0.98053 1.00226 1.18096 0.84048 0.85430 0.83975 1.90990 1.57176 1.61056 1.29261 0.91489 0.77063 0.85968 0.85500 0.72547 0.82037 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 13.05 55.50 0.72 -22.91 15 2 C 0.03 0.72 5.50 -17.47 -0.10 0.62 15 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 15 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 15 9 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 15 10 C 0.43 10.04 7.85 -10.99 -0.09 9.95 15 11 O -0.59 -16.14 16.01 5.54 0.09 -16.05 15 12 C 0.09 1.61 6.03 -5.19 -0.03 1.58 15 13 N -0.30 -5.23 2.71 -64.52 -0.17 -5.40 15 14 N -0.12 -1.96 10.68 33.40 0.36 -1.60 15 15 C 0.00 0.00 6.84 -82.85 -0.57 -0.57 15 16 C 0.57 6.98 8.32 34.62 0.29 7.26 15 17 O -0.51 -6.72 17.17 -19.24 -0.33 -7.05 15 18 O -0.49 -5.05 13.24 -40.55 -0.54 -5.58 15 19 C -0.03 -0.40 9.67 -38.99 -0.38 -0.77 15 20 C -0.19 -2.45 10.11 -39.12 -0.40 -2.85 15 21 C 0.49 8.55 7.46 -15.18 -0.11 8.43 15 22 O -0.51 -10.45 16.61 4.94 0.08 -10.37 15 23 H 0.28 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.40 9.13 7.90 -40.82 -0.32 8.81 15 25 H 0.12 1.73 8.14 -51.93 -0.42 1.31 15 26 H 0.13 2.04 7.35 -51.93 -0.38 1.66 15 27 H 0.42 1.95 9.11 45.56 0.42 2.36 15 28 H 0.16 1.41 7.72 -52.48 -0.41 1.00 15 29 H 0.17 1.72 8.06 -52.49 -0.42 1.30 15 LS Contribution 280.84 15.07 4.23 4.23 Total: -1.00 -35.51 280.84 -3.21 -38.72 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -1.05 Total: 8.72 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -1.52 Total: 15.18 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.85 Total: -43.48 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.70 Total: -39.06 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.51 -3.21 -38.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229617414.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.562 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds