Wall clock time and date at job start Mon Mar 30 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48508 * 109.47181 * 239.99381 * 3 2 1 5 5 H 1.48496 * 109.47538 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47141 * 119.99768 * 3 2 1 7 7 C 1.38953 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00456 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00178 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99805 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00359 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47090 * 180.02562 * 12 10 9 14 14 N 1.28395 * 119.09545 * 270.27620 * 13 12 10 15 15 C 1.31453 * 122.25521 * 180.25540 * 14 13 12 16 16 C 1.47763 * 119.89816 * 179.74591 * 15 14 13 17 17 O 1.21463 * 120.00071 * 179.72370 * 16 15 14 18 18 O 1.34720 * 119.99998 * 359.72394 * 16 15 14 19 19 C 1.41622 * 120.20033 * 359.47054 * 15 14 13 20 20 C 1.36308 * 118.23773 * 0.25114 * 19 15 14 21 21 C 1.34601 * 119.10162 * 90.00034 * 13 12 10 22 22 O 1.21977 * 120.21885 * 0.04348 * 21 13 12 23 23 H 0.96996 * 119.99827 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00596 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47441 * 59.99710 * 12 10 9 26 26 H 1.09003 * 109.47325 * 299.99634 * 12 10 9 27 27 H 0.96700 * 117.00126 * 180.02562 * 18 16 15 28 28 H 1.08006 * 120.87606 * 180.28128 * 19 15 14 29 29 H 1.08000 * 121.02949 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0011 13 7 2.1955 -5.9765 0.0016 14 7 2.6053 -6.4481 -1.1201 15 6 3.4547 -7.4487 -1.1921 16 6 3.8874 -7.9540 -2.5115 17 8 4.6760 -8.8752 -2.5803 18 8 3.4073 -7.3929 -3.6383 19 6 3.9608 -8.0402 -0.0090 20 6 3.5392 -7.5471 1.1898 21 6 2.6209 -6.4736 1.1779 22 8 2.2159 -6.0006 2.2268 23 1 -0.4850 0.8400 -0.0004 24 1 0.3532 -2.3907 0.0005 25 1 0.6165 -4.9209 -0.8886 26 1 0.6172 -4.9205 0.8914 27 1 3.7191 -7.7577 -4.4778 28 1 4.6626 -8.8599 -0.0555 29 1 3.8965 -7.9639 2.1199 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229617414.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:53 Heat of formation + Delta-G solvation = -115.298650 kcal Electronic energy + Delta-G solvation = -19652.989115 eV Core-core repulsion = 16156.079178 eV Total energy + Delta-G solvation = -3496.909937 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.39294 -41.16622 -40.09408 -39.02319 -37.24320 -36.32035 -35.76649 -33.45834 -32.83344 -30.41947 -27.36998 -26.55646 -25.12576 -23.58741 -21.62035 -20.25402 -20.19393 -18.92277 -18.60963 -18.58597 -17.88019 -17.23816 -17.05326 -16.64976 -16.27206 -15.93773 -15.67829 -15.03323 -14.80330 -14.60477 -14.24017 -14.15166 -13.58417 -13.44130 -12.93671 -12.80775 -12.62861 -12.52347 -12.15630 -12.04913 -11.87025 -11.61593 -11.05529 -10.66208 -10.14265 -9.83348 -8.54769 -6.05046 -0.72171 -0.15685 0.76840 1.34400 1.35861 1.40138 1.50857 1.81929 1.84832 2.20926 2.31394 2.85783 3.00046 3.12123 3.46253 3.65461 3.99663 4.08550 4.11464 4.16691 4.41641 4.51115 4.79430 4.87774 5.33585 5.41727 5.85529 6.26151 6.43888 6.70829 6.94211 6.99876 7.36394 7.90189 8.61596 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004782 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.734773 B = 5853.540456 C = 6407.846884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.005 4.005 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.079 0.921 9 N -0.552 5.552 10 C 0.424 3.576 11 O -0.631 6.631 12 C 0.102 3.898 13 N -0.312 5.312 14 N -0.152 5.152 15 C 0.010 3.990 16 C 0.577 3.423 17 O -0.515 6.515 18 O -0.494 6.494 19 C -0.018 4.018 20 C -0.184 4.184 21 C 0.470 3.530 22 O -0.556 6.556 23 H 0.282 0.718 24 H 0.402 0.598 25 H 0.157 0.843 26 H 0.141 0.859 27 H 0.440 0.560 28 H 0.201 0.799 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 -15.894 -4.834 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.206 4.206 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.097 0.903 9 N -0.188 5.188 10 C 0.211 3.789 11 O -0.519 6.519 12 C -0.021 4.021 13 N -0.134 5.134 14 N 0.016 4.984 15 C -0.158 4.158 16 C 0.418 3.582 17 O -0.403 6.403 18 O -0.307 6.307 19 C -0.040 4.040 20 C -0.213 4.213 21 C 0.271 3.729 22 O -0.436 6.436 23 H 0.091 0.909 24 H 0.237 0.763 25 H 0.175 0.825 26 H 0.158 0.842 27 H 0.303 0.697 28 H 0.218 0.782 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.091 -14.964 -4.408 15.739 hybrid contribution 0.383 0.461 0.119 0.611 sum 2.474 -14.503 -4.290 15.325 Atomic orbital electron populations 1.69643 1.06775 1.29840 1.48766 1.26063 0.96589 1.02402 0.95556 0.84976 0.77864 0.76448 0.78986 1.19475 1.19041 1.19911 1.19620 0.92745 0.83679 1.50922 0.90343 1.41736 1.09592 1.04235 1.63270 1.20558 0.88255 0.86100 0.84035 1.90525 1.15705 1.87753 1.57908 1.21861 0.89956 0.81177 1.09117 1.46400 1.36157 1.27896 1.02899 1.71122 1.07789 1.07085 1.12441 1.20910 1.02359 0.98049 0.94505 1.19308 0.76834 0.78570 0.83527 1.90926 1.33331 1.28454 1.87560 1.84647 1.67231 1.61101 1.17727 1.22389 0.95234 0.97843 0.88532 1.22859 0.99575 0.96631 1.02230 1.18840 0.84421 0.86246 0.83441 1.90957 1.59162 1.62919 1.30524 0.90853 0.76309 0.82530 0.84173 0.69711 0.78209 0.78152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.94 13.05 21.66 0.28 -47.65 15 2 C 0.00 -0.25 5.50 84.93 0.47 0.22 15 3 Si 0.99 42.34 29.55 68.60 2.03 44.37 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.34 -19.24 9.68 84.04 0.81 -18.43 15 8 H 0.08 4.76 7.16 -2.91 -0.02 4.73 15 9 N -0.55 -28.10 5.29 -306.98 -1.62 -29.73 15 10 C 0.42 20.48 7.85 87.65 0.69 21.17 15 11 O -0.63 -35.84 16.01 -3.08 -0.05 -35.89 15 12 C 0.10 3.61 6.03 85.63 0.52 4.13 15 13 N -0.31 -10.85 2.71 -476.23 -1.29 -12.14 15 14 N -0.15 -4.75 10.68 -48.23 -0.52 -5.26 15 15 C 0.01 0.26 6.84 42.56 0.29 0.55 15 16 C 0.58 12.61 8.32 70.34 0.59 13.19 15 17 O -0.52 -11.94 17.17 19.96 0.34 -11.60 15 18 O -0.49 -8.90 13.24 -56.30 -0.75 -9.65 15 19 C -0.02 -0.36 9.67 22.65 0.22 -0.15 15 20 C -0.18 -4.47 10.11 22.57 0.23 -4.24 15 21 C 0.47 16.40 7.46 85.02 0.63 17.04 15 22 O -0.56 -23.26 16.61 -5.24 -0.09 -23.35 15 23 H 0.28 13.85 8.31 -92.71 -0.77 13.08 15 24 H 0.40 18.94 7.90 -92.71 -0.73 18.21 15 25 H 0.16 4.31 8.14 -2.39 -0.02 4.29 15 26 H 0.14 4.54 7.35 -2.39 -0.02 4.52 15 27 H 0.44 2.87 9.11 -74.06 -0.67 2.20 15 28 H 0.20 2.56 7.72 -2.91 -0.02 2.54 15 29 H 0.20 3.50 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -78.43 280.84 2.63 -75.80 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.16 Total: 21.61 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: 4.44 Total: 33.47 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.14 Total: -94.78 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -0.54 Total: -80.48 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -78.43 2.63 -75.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229617414.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.498 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds