Wall clock time and date at job start Mon Mar 30 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.37738 * 110.99864 * 236.04974 * 2 1 3 13 13 C 1.38053 * 120.62972 * 123.67689 * 12 2 1 14 14 C 1.39449 * 119.00268 * 179.69967 * 13 12 2 15 15 Cl 1.73603 * 119.80108 * 180.30725 * 14 13 12 16 16 N 1.31775 * 120.39797 * 0.60232 * 14 13 12 17 17 C 1.33789 * 121.20367 * 359.68611 * 16 14 13 18 18 N 1.32865 * 132.40022 * 180.02562 * 17 16 14 19 19 C 1.32752 * 109.73548 * 179.97438 * 18 17 16 20 20 N 1.31051 * 109.62475 * 0.02562 * 19 18 17 21 21 N 1.36565 * 120.62961 * 303.95346 * 12 2 1 22 22 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 23 23 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 25 25 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 26 26 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.07991 * 120.49667 * 359.97355 * 13 12 2 29 29 H 1.07995 * 125.18970 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3491 1.5290 7 7 2.7128 4.0015 0.6155 8 14 1.5839 4.1863 3.1388 9 1 0.8167 3.2436 3.9920 10 1 2.8260 4.5928 3.8441 11 1 0.7569 5.3878 2.8603 12 6 1.9626 -0.7181 -1.0667 13 6 2.8296 -0.1330 -1.9677 14 6 3.3136 -0.8934 -3.0317 15 17 4.4112 -0.1807 -4.1724 16 7 2.9383 -2.1478 -3.1799 17 6 2.0940 -2.7252 -2.3174 18 7 1.5773 -3.9475 -2.2517 19 6 0.7794 -4.0406 -1.1948 20 7 0.7583 -2.8960 -0.5570 21 7 1.5992 -2.0208 -1.2563 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1083 27 1 2.9874 4.9176 0.7775 28 1 3.1320 0.8967 -1.8477 29 1 0.2313 -4.9248 -0.9048 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229752862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:52 Heat of formation + Delta-G solvation = 135.893475 kcal Electronic energy + Delta-G solvation = -17782.273011 eV Core-core repulsion = 14769.257498 eV Total energy + Delta-G solvation = -3013.015513 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.09187 -40.68466 -39.01067 -37.74643 -35.30466 -34.24199 -32.27737 -31.66728 -29.66394 -27.66485 -25.87086 -25.01326 -23.92386 -22.18648 -19.90018 -19.26104 -18.81218 -17.94748 -17.70927 -16.92761 -16.20425 -15.97887 -15.70502 -15.59130 -14.82395 -14.72550 -14.27199 -13.77749 -13.58246 -13.15283 -12.94619 -12.79463 -12.66070 -12.59415 -12.51104 -12.16154 -11.54449 -11.36978 -11.28816 -10.91207 -10.66617 -10.47512 -9.34256 -8.29518 -6.39802 -0.85297 -0.50693 0.13916 0.58978 1.40961 1.42337 1.45982 1.56206 2.06468 2.17577 2.37693 2.57605 2.98498 3.06976 3.59877 3.69659 3.95100 4.15639 4.21917 4.35118 4.64865 4.75548 4.84722 4.91471 5.03895 5.22777 5.45230 5.59014 5.78438 6.06687 6.13318 6.69204 6.73428 7.29890 8.81226 Molecular weight = 267.06amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.006306 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.304180 B = 4438.839725 C = 5715.168147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.476 5.476 3 C 0.200 3.800 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.419 3.581 13 C -0.282 4.282 14 C 0.305 3.695 15 Cl 0.033 6.967 16 N -0.509 5.509 17 C 0.465 3.535 18 N -0.552 5.552 19 C 0.261 3.739 20 N -0.351 5.351 21 N -0.346 5.346 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.017 0.983 26 H 0.040 0.960 27 H 0.270 0.730 28 H 0.190 0.810 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -7.646 -5.091 9.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.187 5.187 3 C 0.076 3.924 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.197 3.803 13 C -0.314 4.314 14 C 0.119 3.881 15 Cl 0.062 6.938 16 N -0.233 5.233 17 C 0.104 3.896 18 N -0.287 5.287 19 C -0.040 4.040 20 N -0.181 5.181 21 N -0.129 5.129 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -1.957 -8.496 -4.895 9.999 hybrid contribution -0.093 1.539 0.647 1.672 sum -2.050 -6.957 -4.248 8.405 Atomic orbital electron populations 1.22523 0.80987 1.03678 1.03479 1.57973 1.11541 1.17972 1.31221 1.20028 0.96032 0.78182 0.98127 1.21261 1.36731 0.97789 1.01863 0.91546 1.25668 0.94522 0.97620 1.00250 1.70001 1.37855 1.12190 1.35552 0.85386 0.78041 0.78329 0.79207 1.19097 1.20671 1.20292 1.19579 0.91915 0.81507 0.87344 1.21933 1.08933 1.04499 0.96020 1.21894 0.88940 0.87863 0.89390 1.98449 1.57858 1.79701 1.57762 1.67196 1.16860 1.11615 1.27629 1.22587 0.92846 0.89506 0.84656 1.70993 1.19503 1.13201 1.24956 1.27274 0.92808 0.97351 0.86567 1.78435 1.17077 1.01973 1.20570 1.48900 1.32960 1.09283 1.21785 0.93607 0.89408 0.88646 0.96513 0.94227 0.92131 0.79281 0.70456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 9.20 127.69 1.17 2.47 15 2 N -0.48 -18.78 4.80 -729.56 -3.50 -22.28 15 3 C 0.20 8.89 3.41 85.56 0.29 9.18 15 4 C -0.54 -26.50 8.51 25.60 0.22 -26.28 15 5 H 0.07 3.25 7.10 -2.91 -0.02 3.23 15 6 C 0.02 1.02 5.46 84.66 0.46 1.48 15 7 N -0.92 -48.10 13.29 21.45 0.28 -47.81 15 8 Si 0.97 39.89 29.54 68.60 2.03 41.91 15 9 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 11 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 12 C 0.42 15.44 6.49 131.94 0.86 16.29 15 13 C -0.28 -9.53 8.66 22.52 0.19 -9.33 15 14 C 0.30 9.67 7.31 84.99 0.62 10.29 15 15 Cl 0.03 0.86 29.12 -2.72 -0.08 0.78 15 16 N -0.51 -17.86 10.45 -188.88 -1.97 -19.83 15 17 C 0.47 16.81 8.99 261.61 2.35 19.16 15 18 N -0.55 -18.28 11.26 -203.47 -2.29 -20.57 15 19 C 0.26 6.91 12.98 180.82 2.35 9.26 15 20 N -0.35 -11.37 10.88 -61.35 -0.67 -12.04 15 21 N -0.35 -12.44 3.75 -195.01 -0.73 -13.17 15 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.09 2.88 6.07 -2.38 -0.01 2.87 15 24 H 0.09 3.36 6.86 -2.39 -0.02 3.34 15 25 H 0.02 0.78 7.93 -2.39 -0.02 0.77 15 26 H 0.04 1.86 6.70 -2.39 -0.02 1.84 15 27 H 0.27 13.38 8.31 -92.71 -0.77 12.61 15 28 H 0.19 6.36 5.84 -2.92 -0.02 6.34 15 29 H 0.28 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -58.33 270.44 2.79 -55.54 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.20 Total: 4.96 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 8.52 Total: 32.52 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -8.88 Total: -135.70 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -58.33 2.79 -55.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229752862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.431 kcal (2) G-P(sol) polarization free energy of solvation -58.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds