Wall clock time and date at job start Mon Mar 30 2020 04:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47084 * 248.74521 * 3 2 1 5 5 C 1.37098 * 120.00409 * 263.97700 * 4 3 2 6 6 H 1.07991 * 120.00802 * 202.26025 * 5 4 3 7 7 C 1.38957 * 119.99663 * 22.26108 * 5 4 3 8 8 N 1.31408 * 119.99963 * 17.36399 * 7 5 4 9 9 Si 1.86798 * 119.99950 * 197.36675 * 7 5 4 10 10 H 1.48500 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47067 * 120.00005 * 9 7 5 12 12 H 1.48504 * 109.46834 * 239.99853 * 9 7 5 13 13 C 1.34778 * 119.99948 * 83.98275 * 4 3 2 14 14 O 1.21296 * 119.99805 * 184.69585 * 13 4 3 15 15 C 1.50698 * 120.00157 * 4.68845 * 13 4 3 16 16 H 1.08997 * 110.86393 * 305.33298 * 15 13 4 17 17 C 1.54748 * 110.97027 * 69.13557 * 15 13 4 18 18 C 1.51690 * 102.54714 * 142.36804 * 17 15 13 19 19 C 1.47471 * 125.85928 * 164.60728 * 18 17 15 20 20 O 1.21470 * 120.00187 * 0.27431 * 19 18 17 21 21 O 1.34751 * 119.99812 * 179.97438 * 19 18 17 22 22 N 1.29057 * 108.27316 * 344.87006 * 18 17 15 23 23 O 1.41392 * 112.87294 * 359.24857 * 22 18 17 24 24 H 1.08999 * 109.47191 * 128.74491 * 3 2 1 25 25 H 1.09001 * 109.47488 * 8.74516 * 3 2 1 26 26 H 0.96994 * 120.00494 * 180.02562 * 8 7 5 27 27 H 1.08992 * 110.79080 * 24.10006 * 17 15 13 28 28 H 1.08999 * 110.95058 * 260.70592 * 17 15 13 29 29 H 0.96704 * 117.00228 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5016 1.2872 5 6 3.4415 1.8214 1.4229 6 1 4.1168 2.1249 2.2091 7 6 2.9225 2.7687 0.5487 8 7 1.8630 2.4844 -0.1748 9 14 3.7310 4.4463 0.4021 10 1 4.8984 4.5148 1.3172 11 1 4.1844 4.6567 -0.9962 12 1 2.7522 5.5011 0.7691 13 6 3.2057 -0.3351 2.3381 14 8 3.5280 0.0957 3.4252 15 6 2.9277 -1.8058 2.1627 16 1 1.9386 -1.9654 1.7335 17 6 4.0216 -2.4768 1.2979 18 6 4.1843 -3.8299 1.9640 19 6 4.8601 -5.0040 1.3812 20 8 5.3519 -4.9337 0.2728 21 8 4.9372 -6.1531 2.0809 22 7 3.6251 -3.7788 3.1260 23 8 3.0681 -2.5112 3.4125 24 1 2.9711 0.6440 -0.8015 25 1 2.9719 -1.0149 -0.1562 26 1 1.5010 3.1455 -0.7853 27 1 4.9513 -1.9097 1.3415 28 1 3.6877 -2.5909 0.2666 29 1 5.3894 -6.8955 1.6572 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230755727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:57 Heat of formation + Delta-G solvation = -46.050110 kcal Electronic energy + Delta-G solvation = -20024.040984 eV Core-core repulsion = 16530.133889 eV Total energy + Delta-G solvation = -3493.907095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97887 -40.01667 -38.43557 -36.52057 -35.94430 -34.50260 -33.21075 -32.31257 -30.73586 -27.63477 -25.79501 -25.40757 -23.64058 -20.69713 -19.82180 -18.40725 -18.13253 -17.56425 -17.10740 -16.42561 -16.05104 -15.87109 -15.31529 -14.75876 -14.37395 -13.94408 -13.55071 -13.38277 -13.27331 -12.97755 -12.53577 -12.25342 -11.96860 -11.89301 -11.69375 -11.41298 -11.34586 -11.25248 -11.13921 -10.69926 -10.54220 -10.44352 -9.88512 -9.43864 -8.79554 -8.22063 -6.65132 -4.21396 0.53433 2.06570 2.43681 2.86497 2.97176 3.15603 3.21241 3.28933 3.56162 3.82393 3.96921 4.11139 4.38005 4.41916 4.64533 4.76132 4.86711 5.02657 5.18206 5.35522 5.47888 5.60834 5.88066 5.94887 6.30104 6.81613 7.31861 7.43332 7.67554 8.07966 8.60106 8.78191 8.96764 9.46192 10.40633 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.005403 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.610258 B = 5181.458314 C = 5308.769726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.240 3.760 3 C 0.215 3.785 4 N -0.431 5.431 5 C -0.313 4.313 6 H 0.111 0.889 7 C 0.035 3.965 8 N -0.875 5.875 9 Si 0.933 3.067 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.458 3.542 14 O -0.543 6.543 15 C 0.029 3.971 16 H 0.108 0.892 17 C -0.122 4.122 18 C 0.047 3.953 19 C 0.568 3.432 20 O -0.486 6.486 21 O -0.495 6.495 22 N -0.208 5.208 23 O -0.139 6.139 24 H 0.132 0.868 25 H 0.083 0.917 26 H 0.276 0.724 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -11.857 -3.399 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.079 4.079 3 C 0.088 3.912 4 N -0.153 5.153 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.759 3.241 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.243 3.757 14 O -0.423 6.423 15 C -0.033 4.033 16 H 0.126 0.874 17 C -0.161 4.161 18 C -0.146 4.146 19 C 0.408 3.592 20 O -0.370 6.370 21 O -0.307 6.307 22 N 0.051 4.949 23 O -0.164 6.164 24 H 0.149 0.851 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.667 -11.685 -2.037 12.746 hybrid contribution 0.872 0.970 -1.267 1.818 sum 5.539 -10.715 -3.303 12.506 Atomic orbital electron populations 1.80923 1.13450 1.11941 1.07950 1.29168 0.95269 0.90366 0.93061 1.18869 0.81946 0.99642 0.90782 1.43519 1.56307 1.09125 1.06320 1.19795 1.26190 0.80629 1.17366 0.87174 1.25385 0.94599 1.00194 0.96788 1.69762 1.18692 1.36779 1.26065 0.85739 0.79303 0.80678 0.78337 1.18951 1.20298 1.20698 1.19388 0.85511 0.85588 0.85196 1.90629 1.50502 1.76754 1.24433 1.23827 0.99800 0.94857 0.84837 0.87432 1.22960 1.01850 0.88987 1.02323 1.24652 0.99186 0.94905 0.95835 1.19163 0.76263 0.81494 0.82283 1.90977 1.43172 1.83532 1.19292 1.84654 1.73464 1.22330 1.50211 1.78494 1.01182 1.01589 1.13672 1.91435 1.78795 1.20208 1.25936 0.85071 0.89979 0.91325 0.86044 0.86022 0.71902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.53 18.54 42.16 0.78 -9.75 15 2 C 0.24 4.98 12.84 -20.76 -0.27 4.72 15 3 C 0.21 3.87 4.84 -6.83 -0.03 3.83 15 4 N -0.43 -9.37 2.59 -117.94 -0.31 -9.67 15 5 C -0.31 -7.59 9.24 -14.93 -0.14 -7.72 15 6 H 0.11 2.82 7.48 -52.49 -0.39 2.42 15 7 C 0.03 0.82 4.93 -17.47 -0.09 0.73 15 8 N -0.87 -20.95 9.41 55.50 0.52 -20.43 15 9 Si 0.93 18.72 29.59 -169.99 -5.03 13.69 15 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 13 C 0.46 10.01 6.89 -10.99 -0.08 9.94 15 14 O -0.54 -14.22 16.31 -13.29 -0.22 -14.44 15 15 C 0.03 0.50 3.27 -26.96 -0.09 0.42 15 16 H 0.11 1.73 7.41 -51.93 -0.38 1.34 15 17 C -0.12 -1.61 5.43 -26.48 -0.14 -1.75 15 18 C 0.05 0.62 7.30 -79.51 -0.58 0.04 15 19 C 0.57 6.29 8.34 34.49 0.29 6.58 15 20 O -0.49 -6.03 17.74 -19.24 -0.34 -6.37 15 21 O -0.50 -4.15 13.43 -40.63 -0.55 -4.70 15 22 N -0.21 -3.31 12.51 35.26 0.44 -2.87 15 23 O -0.14 -2.64 11.83 -30.21 -0.36 -3.00 15 24 H 0.13 2.38 6.66 -51.93 -0.35 2.04 15 25 H 0.08 1.08 4.72 -51.93 -0.24 0.83 15 26 H 0.28 6.42 8.31 -40.82 -0.34 6.08 15 27 H 0.12 1.58 7.90 -51.93 -0.41 1.17 15 28 H 0.12 1.23 6.69 -51.93 -0.35 0.88 15 29 H 0.42 1.15 9.11 45.56 0.42 1.57 15 LS Contribution 274.61 15.07 4.14 4.14 Total: -1.00 -32.77 274.61 -2.88 -35.65 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -0.85 Total: 0.97 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: -1.12 Total: 16.77 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 1.44 Total: -42.72 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.46 Total: -28.50 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.77 -2.88 -35.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230755727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.402 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds