Wall clock time and date at job start Mon Mar 30 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47084 * 248.74521 * 3 2 1 5 5 C 1.37098 * 120.00409 * 263.97700 * 4 3 2 6 6 H 1.07991 * 120.00802 * 202.26025 * 5 4 3 7 7 C 1.38957 * 119.99663 * 22.26108 * 5 4 3 8 8 N 1.31408 * 119.99963 * 17.36399 * 7 5 4 9 9 Si 1.86798 * 119.99950 * 197.36675 * 7 5 4 10 10 H 1.48500 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47067 * 120.00005 * 9 7 5 12 12 H 1.48504 * 109.46834 * 239.99853 * 9 7 5 13 13 C 1.34778 * 119.99948 * 83.98275 * 4 3 2 14 14 O 1.21296 * 119.99805 * 184.69585 * 13 4 3 15 15 C 1.50698 * 120.00157 * 4.68845 * 13 4 3 16 16 H 1.08997 * 110.86393 * 305.33298 * 15 13 4 17 17 C 1.54748 * 110.97027 * 69.13557 * 15 13 4 18 18 C 1.51690 * 102.54714 * 142.36804 * 17 15 13 19 19 C 1.47471 * 125.85928 * 164.60728 * 18 17 15 20 20 O 1.21470 * 120.00187 * 0.27431 * 19 18 17 21 21 O 1.34751 * 119.99812 * 179.97438 * 19 18 17 22 22 N 1.29057 * 108.27316 * 344.87006 * 18 17 15 23 23 O 1.41392 * 112.87294 * 359.24857 * 22 18 17 24 24 H 1.08999 * 109.47191 * 128.74491 * 3 2 1 25 25 H 1.09001 * 109.47488 * 8.74516 * 3 2 1 26 26 H 0.96994 * 120.00494 * 180.02562 * 8 7 5 27 27 H 1.08992 * 110.79080 * 24.10006 * 17 15 13 28 28 H 1.08999 * 110.95058 * 260.70592 * 17 15 13 29 29 H 0.96704 * 117.00228 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5016 1.2872 5 6 3.4415 1.8214 1.4229 6 1 4.1168 2.1249 2.2091 7 6 2.9225 2.7687 0.5487 8 7 1.8630 2.4844 -0.1748 9 14 3.7310 4.4463 0.4021 10 1 4.8984 4.5148 1.3172 11 1 4.1844 4.6567 -0.9962 12 1 2.7522 5.5011 0.7691 13 6 3.2057 -0.3351 2.3381 14 8 3.5280 0.0957 3.4252 15 6 2.9277 -1.8058 2.1627 16 1 1.9386 -1.9654 1.7335 17 6 4.0216 -2.4768 1.2979 18 6 4.1843 -3.8299 1.9640 19 6 4.8601 -5.0040 1.3812 20 8 5.3519 -4.9337 0.2728 21 8 4.9372 -6.1531 2.0809 22 7 3.6251 -3.7788 3.1260 23 8 3.0681 -2.5112 3.4125 24 1 2.9711 0.6440 -0.8015 25 1 2.9719 -1.0149 -0.1562 26 1 1.5010 3.1455 -0.7853 27 1 4.9513 -1.9097 1.3415 28 1 3.6877 -2.5909 0.2666 29 1 5.3894 -6.8955 1.6572 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230755727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:56 Heat of formation + Delta-G solvation = -70.337335 kcal Electronic energy + Delta-G solvation = -20025.094157 eV Core-core repulsion = 16530.133889 eV Total energy + Delta-G solvation = -3494.960268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.13436 -41.08562 -39.95735 -37.67949 -37.30112 -36.24700 -34.43498 -34.03052 -32.09632 -29.24082 -27.34889 -26.44528 -25.08911 -21.76031 -21.24315 -19.86295 -19.31097 -18.86333 -18.43506 -17.89614 -17.20711 -17.03487 -16.69795 -16.25808 -15.94806 -15.22048 -15.05573 -14.81731 -14.41025 -14.34977 -13.96068 -13.86321 -13.52195 -13.19241 -13.04591 -12.91317 -12.71441 -12.45734 -12.42454 -12.21935 -12.07144 -12.00729 -11.21518 -11.20054 -10.48866 -10.00779 -8.45452 -6.08024 -0.48466 1.02027 1.35578 1.48599 1.50802 1.59152 1.67875 1.72238 2.01572 2.20222 2.34306 2.83385 2.93266 3.04101 3.16550 3.44982 3.63168 3.65855 3.91054 4.15369 4.35372 4.49434 4.62092 4.82989 5.24622 5.44054 5.66731 5.94466 6.29868 6.77778 6.95836 7.00885 7.19416 7.72409 8.58049 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.005403 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.610258 B = 5181.458314 C = 5308.769726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.252 3.748 3 C 0.215 3.785 4 N -0.437 5.437 5 C -0.338 4.338 6 H 0.086 0.914 7 C 0.010 3.990 8 N -0.890 5.890 9 Si 0.991 3.009 10 H -0.270 1.270 11 H -0.260 1.260 12 H -0.291 1.291 13 C 0.451 3.549 14 O -0.599 6.599 15 C 0.034 3.966 16 H 0.121 0.879 17 C -0.120 4.120 18 C 0.071 3.929 19 C 0.581 3.419 20 O -0.494 6.494 21 O -0.490 6.490 22 N -0.229 5.229 23 O -0.182 6.182 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.277 0.723 27 H 0.128 0.872 28 H 0.163 0.837 29 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -13.256 -5.214 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.066 4.066 3 C 0.089 3.911 4 N -0.157 5.157 5 C -0.466 4.466 6 H 0.104 0.896 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.815 3.185 10 H -0.194 1.194 11 H -0.185 1.185 12 H -0.218 1.218 13 C 0.239 3.761 14 O -0.483 6.483 15 C -0.028 4.028 16 H 0.138 0.862 17 C -0.159 4.159 18 C -0.122 4.122 19 C 0.421 3.579 20 O -0.379 6.379 21 O -0.305 6.305 22 N 0.026 4.974 23 O -0.204 6.204 24 H 0.152 0.848 25 H 0.155 0.845 26 H 0.088 0.912 27 H 0.146 0.854 28 H 0.181 0.819 29 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 5.680 -13.110 -3.875 14.804 hybrid contribution 0.600 1.308 -0.696 1.599 sum 6.280 -11.802 -4.571 14.128 Atomic orbital electron populations 1.80929 1.14744 1.13362 1.09138 1.29683 0.95802 0.89165 0.91910 1.19263 0.80228 1.02654 0.88932 1.43653 1.55818 1.08548 1.07698 1.19711 1.26846 0.82425 1.17568 0.89622 1.25967 0.94647 1.02614 0.96042 1.69836 1.19083 1.37627 1.26199 0.84896 0.77947 0.76739 0.78894 1.19395 1.18453 1.21759 1.20164 0.83988 0.87633 0.84325 1.90586 1.52739 1.78355 1.26578 1.23671 1.01753 0.91714 0.85670 0.86170 1.23047 1.00867 0.88465 1.03483 1.25051 0.96898 0.95691 0.94597 1.18700 0.75794 0.81564 0.81867 1.90994 1.43532 1.83751 1.19640 1.84608 1.73415 1.22356 1.50083 1.78541 1.03596 1.00085 1.15187 1.91419 1.79833 1.21893 1.27214 0.84804 0.84483 0.91227 0.85408 0.81943 0.68820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.46 18.54 20.00 0.37 -22.09 15 2 C 0.25 10.15 12.84 89.44 1.15 11.30 15 3 C 0.22 7.31 4.84 84.57 0.41 7.72 15 4 N -0.44 -18.83 2.59 -645.44 -1.67 -20.50 15 5 C -0.34 -16.57 9.24 84.04 0.78 -15.79 15 6 H 0.09 4.55 7.48 -2.92 -0.02 4.53 15 7 C 0.01 0.48 4.93 84.93 0.42 0.90 15 8 N -0.89 -41.92 9.41 21.66 0.20 -41.72 15 9 Si 0.99 38.07 29.59 68.60 2.03 40.10 15 10 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 11 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 12 H -0.29 -11.63 7.11 99.48 0.71 -10.93 15 13 C 0.45 19.89 6.89 87.66 0.60 20.49 15 14 O -0.60 -32.53 16.31 14.93 0.24 -32.29 15 15 C 0.03 1.14 3.27 30.44 0.10 1.24 15 16 H 0.12 3.67 7.41 -2.39 -0.02 3.65 15 17 C -0.12 -2.80 5.43 30.76 0.17 -2.64 15 18 C 0.07 1.70 7.30 45.72 0.33 2.03 15 19 C 0.58 10.82 8.34 70.26 0.59 11.40 15 20 O -0.49 -10.32 17.74 19.93 0.35 -9.96 15 21 O -0.49 -6.46 13.43 -56.62 -0.76 -7.22 15 22 N -0.23 -7.03 12.51 -42.36 -0.53 -7.56 15 23 O -0.18 -6.97 11.83 -20.31 -0.24 -7.21 15 24 H 0.13 4.57 6.66 -2.39 -0.02 4.56 15 25 H 0.14 3.07 4.72 -2.39 -0.01 3.06 15 26 H 0.28 12.63 8.31 -92.71 -0.77 11.86 15 27 H 0.13 2.97 7.90 -2.39 -0.02 2.95 15 28 H 0.16 2.45 6.69 -2.39 -0.02 2.43 15 29 H 0.45 0.66 9.11 -74.05 -0.67 -0.02 15 Total: -1.00 -73.09 274.61 5.11 -67.98 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.57 Total: 3.82 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 4.54 Total: 36.66 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -1.63 Total: -91.87 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.40 Total: -56.68 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -73.09 5.11 -67.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230755727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.359 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds