Wall clock time and date at job start Mon Mar 30 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86788 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47366 * 240.00202 * 3 2 1 5 5 H 1.48498 * 109.47581 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00397 * 3 2 1 7 7 C 1.37881 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99799 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99980 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40487 * 66.46256 * 9 7 2 11 11 O 1.42104 * 106.40143 * 293.53678 * 9 7 2 12 12 N 1.65607 * 107.21641 * 179.97438 * 9 7 2 13 13 C 1.46506 * 119.99689 * 65.00002 * 12 9 7 14 14 H 1.08993 * 109.47068 * 24.99689 * 13 12 9 15 15 C 1.52997 * 109.46949 * 264.99740 * 13 12 9 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 60.00459 * 16 15 13 18 18 C 1.52997 * 109.46817 * 299.99733 * 17 16 15 19 19 C 1.52999 * 109.46691 * 145.00270 * 13 12 9 20 20 H 1.09000 * 109.47160 * 299.99453 * 19 13 12 21 21 Cl 1.80296 * 109.47502 * 59.99963 * 19 13 12 22 22 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99877 * 244.99832 * 12 9 7 24 24 H 1.09001 * 109.47289 * 60.00076 * 15 13 12 25 25 H 1.09000 * 109.47611 * 300.00647 * 15 13 12 26 26 H 1.08996 * 109.47452 * 300.00000 * 16 15 13 27 27 H 1.09000 * 109.47054 * 180.02562 * 16 15 13 28 28 H 1.09002 * 109.47070 * 179.97438 * 17 16 15 29 29 H 1.08996 * 109.47407 * 59.99513 * 17 16 15 30 30 H 1.09001 * 109.47502 * 300.00518 * 18 17 16 31 31 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2495 12 7 2.2482 -3.9355 -0.0019 13 6 3.1401 -4.1094 1.1472 14 1 2.6695 -3.6945 2.0384 15 6 4.4604 -3.3832 0.8825 16 6 5.3922 -3.5653 2.0823 17 6 5.6639 -5.0559 2.2953 18 6 4.3436 -5.7821 2.5600 19 6 3.4118 -5.5999 1.3608 20 1 2.4712 -6.1173 1.5494 21 17 4.1903 -6.2862 -0.1135 22 1 -0.4850 0.8400 0.0004 23 1 2.3164 -4.5323 -0.7636 24 1 4.2669 -2.3213 0.7302 25 1 4.9310 -3.7980 -0.0089 26 1 4.9218 -3.1506 2.9738 27 1 6.3326 -3.0475 1.8939 28 1 6.3281 -5.1856 3.1498 29 1 6.1342 -5.4705 1.4037 30 1 3.8731 -5.3675 3.4516 31 1 4.5371 -6.8440 2.7122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232022871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:07 Heat of formation + Delta-G solvation = -127.685377 kcal Electronic energy + Delta-G solvation = -17326.479330 eV Core-core repulsion = 14372.892629 eV Total energy + Delta-G solvation = -2953.586701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.70923 -35.35827 -35.16632 -33.95245 -33.70315 -33.05422 -30.52723 -28.22625 -26.14157 -22.52073 -22.05697 -19.78087 -18.91259 -17.40281 -16.50860 -15.94330 -15.18418 -14.81893 -14.41240 -14.04820 -13.96003 -13.54746 -13.08361 -12.76966 -12.49139 -12.01977 -11.62387 -11.46765 -11.20437 -11.14771 -10.94025 -10.78896 -10.61920 -10.50653 -10.31998 -10.27660 -10.18667 -9.95463 -9.84156 -9.23492 -8.95744 -8.53722 -6.69822 -5.31525 2.31690 2.40131 3.08187 3.13018 3.18249 4.05475 4.50022 4.63209 4.67846 4.85777 4.94411 5.14493 5.28045 5.46534 5.51583 5.57086 5.75039 5.77419 5.87324 6.00926 6.07495 6.18386 6.26792 6.46780 6.50493 6.66330 6.86323 7.34911 7.90439 7.99459 8.89548 10.24531 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.007579 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.630439 B = 3693.625948 C = 4263.055651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.106 0.894 9 S 2.714 3.286 10 O -1.006 7.006 11 O -1.008 7.008 12 N -1.132 6.132 13 C 0.158 3.842 14 H 0.107 0.893 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.001 4.001 20 H 0.104 0.896 21 Cl -0.185 7.185 22 H 0.291 0.709 23 H 0.404 0.596 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 -8.345 4.697 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.124 0.876 9 S 2.814 3.186 10 O -0.996 6.996 11 O -0.998 6.998 12 N -0.885 5.885 13 C 0.049 3.951 14 H 0.125 0.875 15 C -0.189 4.189 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.047 4.047 20 H 0.123 0.877 21 Cl -0.159 7.159 22 H 0.101 0.899 23 H 0.236 0.764 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.650 -8.337 4.745 13.606 hybrid contribution 1.024 0.916 -0.457 1.448 sum 10.674 -7.421 4.288 13.689 Atomic orbital electron populations 1.69893 1.06793 1.30793 1.40062 1.24736 0.94423 1.00760 0.88529 0.86228 0.79906 0.79837 0.79758 1.18880 1.20192 1.18851 1.30614 1.06084 1.11711 1.66877 0.87607 1.00438 0.72075 0.73293 0.72834 1.93376 1.73095 1.87596 1.45569 1.93355 1.72892 1.87580 1.46005 1.56114 1.54761 1.51302 1.26324 1.20782 0.91411 0.92287 0.90577 0.87546 1.22290 0.94988 1.02790 0.98789 1.21531 0.99651 0.95713 0.98812 1.21614 0.96482 0.95907 1.02122 1.21844 0.96184 1.01611 0.96441 1.24557 0.97875 0.96593 0.85644 0.87741 1.98684 1.84369 1.86892 1.45929 0.89868 0.76380 0.89425 0.90753 0.91614 0.91708 0.91846 0.91055 0.89781 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.66 13.19 55.43 0.73 -23.92 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -1.02 -27.17 9.57 30.60 0.29 -26.88 16 8 H 0.11 2.53 5.61 -52.49 -0.29 2.24 16 9 S 2.71 70.62 5.00 -107.50 -0.54 70.08 16 10 O -1.01 -29.48 18.02 -57.17 -1.03 -30.51 16 11 O -1.01 -28.67 17.36 -57.17 -0.99 -29.66 16 12 N -1.13 -22.16 5.44 -4.89 -0.03 -22.19 16 13 C 0.16 2.59 2.50 -67.93 -0.17 2.42 16 14 H 0.11 1.83 7.50 -51.93 -0.39 1.44 16 15 C -0.15 -2.26 5.32 -26.73 -0.14 -2.40 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.28 5.72 -26.73 -0.15 -1.44 16 18 C -0.12 -1.28 5.51 -26.76 -0.15 -1.43 16 19 C 0.00 -0.02 3.27 -26.76 -0.09 -0.11 16 20 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 21 Cl -0.18 -2.48 24.98 -51.86 -1.30 -3.78 16 22 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.40 7.30 7.88 -34.48 -0.27 7.03 16 24 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 25 H 0.07 1.10 7.06 -51.93 -0.37 0.73 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -33.36 276.13 -8.33 -41.70 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.66 Total: 6.73 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -0.66 Total: -27.84 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.70 Total: -46.11 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -2.02 Total: -60.17 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 70.62 SS G_CDS: -0.54 Total: 70.08 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -1.30 Total: -3.78 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.36 -8.33 -41.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232022871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.990 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds