Wall clock time and date at job start Mon Mar 30 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86788 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47366 * 240.00202 * 3 2 1 5 5 H 1.48498 * 109.47581 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00397 * 3 2 1 7 7 C 1.37881 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99799 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99980 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40487 * 66.46256 * 9 7 2 11 11 O 1.42104 * 106.40143 * 293.53678 * 9 7 2 12 12 N 1.65607 * 107.21641 * 179.97438 * 9 7 2 13 13 C 1.46506 * 119.99689 * 65.00002 * 12 9 7 14 14 H 1.08993 * 109.47068 * 24.99689 * 13 12 9 15 15 C 1.52997 * 109.46949 * 264.99740 * 13 12 9 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 60.00459 * 16 15 13 18 18 C 1.52997 * 109.46817 * 299.99733 * 17 16 15 19 19 C 1.52999 * 109.46691 * 145.00270 * 13 12 9 20 20 H 1.09000 * 109.47160 * 299.99453 * 19 13 12 21 21 Cl 1.80296 * 109.47502 * 59.99963 * 19 13 12 22 22 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99877 * 244.99832 * 12 9 7 24 24 H 1.09001 * 109.47289 * 60.00076 * 15 13 12 25 25 H 1.09000 * 109.47611 * 300.00647 * 15 13 12 26 26 H 1.08996 * 109.47452 * 300.00000 * 16 15 13 27 27 H 1.09000 * 109.47054 * 180.02562 * 16 15 13 28 28 H 1.09002 * 109.47070 * 179.97438 * 17 16 15 29 29 H 1.08996 * 109.47407 * 59.99513 * 17 16 15 30 30 H 1.09001 * 109.47502 * 300.00518 * 18 17 16 31 31 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2495 12 7 2.2482 -3.9355 -0.0019 13 6 3.1401 -4.1094 1.1472 14 1 2.6695 -3.6945 2.0384 15 6 4.4604 -3.3832 0.8825 16 6 5.3922 -3.5653 2.0823 17 6 5.6639 -5.0559 2.2953 18 6 4.3436 -5.7821 2.5600 19 6 3.4118 -5.5999 1.3608 20 1 2.4712 -6.1173 1.5494 21 17 4.1903 -6.2862 -0.1135 22 1 -0.4850 0.8400 0.0004 23 1 2.3164 -4.5323 -0.7636 24 1 4.2669 -2.3213 0.7302 25 1 4.9310 -3.7980 -0.0089 26 1 4.9218 -3.1506 2.9738 27 1 6.3326 -3.0475 1.8939 28 1 6.3281 -5.1856 3.1498 29 1 6.1342 -5.4705 1.4037 30 1 3.8731 -5.3675 3.4516 31 1 4.5371 -6.8440 2.7122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232022871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:07 Heat of formation + Delta-G solvation = -153.004375 kcal Electronic energy + Delta-G solvation = -17327.577244 eV Core-core repulsion = 14372.892629 eV Total energy + Delta-G solvation = -2954.684615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83269 -37.38301 -36.40322 -36.13927 -35.26861 -34.91305 -31.53957 -29.49682 -28.23220 -23.56371 -23.19402 -21.11947 -20.67066 -19.28723 -18.29524 -17.52478 -16.91854 -16.19910 -15.94720 -15.54733 -15.34635 -15.11472 -14.28560 -14.01978 -13.87960 -13.67988 -13.19704 -12.98485 -12.76474 -12.51838 -12.48087 -12.43055 -12.31785 -12.16796 -11.89056 -11.76373 -11.39268 -11.21482 -11.12862 -10.96476 -10.83165 -10.16260 -8.73562 -7.45336 0.35549 1.31098 1.35724 1.37259 1.49880 2.21757 2.60463 2.93440 3.52952 3.69811 3.77087 3.91723 4.16813 4.25800 4.33460 4.46189 4.50656 4.57382 4.74665 4.88393 5.00733 5.08340 5.21104 5.27008 5.33891 5.39139 5.47183 5.59917 5.97823 6.32457 6.81357 8.22960 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.007579 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.630439 B = 3693.625948 C = 4263.055651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.246 1.246 7 C -1.034 5.034 8 H 0.127 0.873 9 S 2.718 3.282 10 O -1.048 7.048 11 O -1.041 7.041 12 N -1.118 6.118 13 C 0.147 3.853 14 H 0.095 0.905 15 C -0.149 4.149 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.119 4.119 19 C 0.001 3.999 20 H 0.108 0.892 21 Cl -0.186 7.186 22 H 0.298 0.702 23 H 0.412 0.588 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.221 -8.395 5.609 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.170 1.170 7 C -1.168 5.168 8 H 0.145 0.855 9 S 2.819 3.181 10 O -1.038 7.038 11 O -1.031 7.031 12 N -0.876 5.876 13 C 0.039 3.961 14 H 0.113 0.887 15 C -0.188 4.188 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.045 4.045 20 H 0.126 0.874 21 Cl -0.160 7.160 22 H 0.108 0.892 23 H 0.246 0.754 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.107 -8.418 5.658 15.794 hybrid contribution 0.273 0.841 -0.743 1.155 sum 12.380 -7.577 4.915 15.324 Atomic orbital electron populations 1.69996 1.08822 1.32301 1.41620 1.25990 0.95284 1.05299 0.87592 0.85200 0.78796 0.74669 0.80789 1.17677 1.19131 1.16971 1.30951 1.07333 1.12051 1.66416 0.85474 0.99925 0.72571 0.74082 0.71478 1.93309 1.75031 1.88432 1.47063 1.93304 1.74494 1.88288 1.47013 1.55536 1.54369 1.49869 1.27834 1.21091 0.91192 0.95120 0.88658 0.88725 1.22258 0.94897 1.01015 1.00641 1.21545 0.99321 0.97423 0.97198 1.21605 0.96723 0.94287 1.03088 1.21906 0.95563 1.03159 0.95111 1.24574 0.99190 0.93977 0.86713 0.87407 1.98688 1.84301 1.86700 1.46269 0.89211 0.75374 0.91687 0.90536 0.91406 0.90377 0.89347 0.91332 0.88785 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.27 13.19 21.45 0.28 -52.99 16 2 C 0.07 3.90 5.46 84.65 0.46 4.37 16 3 Si 0.99 40.67 29.54 68.60 2.03 42.69 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 7 C -1.03 -55.46 9.57 67.74 0.65 -54.81 16 8 H 0.13 6.04 5.61 -2.91 -0.02 6.03 16 9 S 2.72 145.06 5.00 -56.49 -0.28 144.78 16 10 O -1.05 -63.46 18.02 -128.00 -2.31 -65.77 16 11 O -1.04 -61.01 17.36 -128.00 -2.22 -63.24 16 12 N -1.12 -44.11 5.44 -169.39 -0.92 -45.03 16 13 C 0.15 4.71 2.50 44.99 0.11 4.82 16 14 H 0.09 3.26 7.50 -2.39 -0.02 3.25 16 15 C -0.15 -4.31 5.32 30.59 0.16 -4.15 16 16 C -0.12 -2.50 5.92 30.59 0.18 -2.32 16 17 C -0.12 -2.07 5.72 30.59 0.17 -1.90 16 18 C -0.12 -2.13 5.51 30.58 0.17 -1.96 16 19 C 0.00 0.02 3.27 30.58 0.10 0.12 16 20 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 21 Cl -0.19 -4.66 24.98 -2.72 -0.07 -4.73 16 22 H 0.30 15.98 8.31 -92.71 -0.77 15.21 16 23 H 0.41 14.95 7.88 -96.74 -0.76 14.18 16 24 H 0.06 2.15 5.74 -2.39 -0.01 2.14 16 25 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.26 7.06 -2.39 -0.02 1.24 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.00 276.13 -1.09 -74.09 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.39 Total: 26.02 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 2.01 Total: -55.83 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -0.64 Total: -98.02 kcal Atomic # 8 Polarization: -124.48 SS G_CDS: -4.53 Total: -129.01 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 145.06 SS G_CDS: -0.28 Total: 144.78 kcal Atomic # 17 Polarization: -4.66 SS G_CDS: -0.07 Total: -4.73 kcal Total: -73.00 -1.09 -74.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232022871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.919 kcal (2) G-P(sol) polarization free energy of solvation -72.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds