Wall clock time and date at job start Mon Mar 30 2020 04:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48497 * 109.46862 * 239.99638 * 3 2 1 5 5 H 1.48497 * 109.46784 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46909 * 119.99605 * 3 2 1 7 7 C 1.37881 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99903 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99952 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40126 * 66.45434 * 9 7 2 11 11 O 1.42102 * 106.39982 * 293.53664 * 9 7 2 12 12 N 1.65600 * 107.21760 * 179.97438 * 9 7 2 13 13 C 1.46507 * 119.99689 * 65.00097 * 12 9 7 14 14 H 1.08996 * 109.46955 * 334.99744 * 13 12 9 15 15 C 1.52996 * 109.47258 * 95.00129 * 13 12 9 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46991 * 299.99311 * 16 15 13 18 18 C 1.53006 * 109.46626 * 60.00378 * 17 16 15 19 19 C 1.52997 * 109.47127 * 299.99539 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 19 18 17 21 21 Cl 1.80300 * 109.47276 * 300.00394 * 19 18 17 22 22 H 0.96998 * 120.00058 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00012 * 244.99678 * 12 9 7 24 24 H 1.09001 * 109.46993 * 300.00050 * 15 13 12 25 25 H 1.09000 * 109.47380 * 59.99156 * 15 13 12 26 26 H 1.09002 * 109.47153 * 179.97438 * 16 15 13 27 27 H 1.08993 * 109.47194 * 60.00154 * 16 15 13 28 28 H 1.08993 * 109.47839 * 300.00447 * 17 16 15 29 29 H 1.09000 * 109.47160 * 180.02562 * 17 16 15 30 30 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 31 31 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 3.1393 -4.1088 1.1505 14 1 3.2457 -3.1588 1.6741 15 6 2.5481 -5.1517 2.1011 16 6 3.4789 -5.3332 3.3017 17 6 4.8509 -5.8054 2.8164 18 6 5.4422 -4.7624 1.8657 19 6 4.5113 -4.5809 0.6651 20 1 4.9327 -3.8382 -0.0123 21 17 4.3345 -6.1522 -0.2013 22 1 -0.4850 0.8400 -0.0004 23 1 2.3170 -4.5325 -0.7607 24 1 1.5704 -4.8157 2.4464 25 1 2.4415 -6.1017 1.5774 26 1 3.0575 -6.0759 3.9792 27 1 3.5858 -4.3834 3.8255 28 1 4.7441 -6.7552 2.2926 29 1 5.5140 -5.9351 3.6717 30 1 5.5491 -3.8125 2.3896 31 1 6.4199 -5.0985 1.5203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232022880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:12 Heat of formation + Delta-G solvation = -128.859287 kcal Electronic energy + Delta-G solvation = -17274.294846 eV Core-core repulsion = 14320.657241 eV Total energy + Delta-G solvation = -2953.637605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.70243 -35.36354 -35.13545 -33.93509 -33.70580 -33.06096 -30.50453 -28.22765 -26.15426 -22.50899 -22.05221 -19.86271 -18.87487 -17.36131 -16.45312 -16.01229 -15.08202 -14.92218 -14.40714 -14.03089 -13.97545 -13.52398 -13.03683 -12.81713 -12.44462 -12.02167 -11.62634 -11.33621 -11.23470 -11.18744 -11.04550 -10.80810 -10.64737 -10.48789 -10.36989 -10.26099 -10.16507 -9.96396 -9.83162 -9.25736 -9.00721 -8.53119 -6.71651 -5.34330 2.31275 2.41186 3.06200 3.11358 3.16221 4.03569 4.50409 4.62769 4.66346 4.86352 4.95348 5.14218 5.27958 5.46517 5.52637 5.55604 5.73081 5.81661 5.83320 6.00707 6.07217 6.17888 6.27997 6.46859 6.51443 6.68502 6.86856 7.29916 7.88397 7.95442 8.86779 10.22557 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.007096 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.087697 B = 3945.126597 C = 4167.215314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.023 5.023 8 H 0.100 0.900 9 S 2.714 3.286 10 O -1.006 7.006 11 O -1.004 7.004 12 N -1.132 6.132 13 C 0.161 3.839 14 H 0.104 0.896 15 C -0.144 4.144 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.003 4.003 20 H 0.107 0.893 21 Cl -0.185 7.185 22 H 0.291 0.709 23 H 0.404 0.596 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -8.034 4.521 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.156 5.156 8 H 0.119 0.881 9 S 2.814 3.186 10 O -0.997 6.997 11 O -0.994 6.994 12 N -0.885 5.885 13 C 0.052 3.948 14 H 0.122 0.878 15 C -0.183 4.183 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.048 4.048 20 H 0.125 0.875 21 Cl -0.159 7.159 22 H 0.102 0.898 23 H 0.236 0.764 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.861 -8.078 4.606 13.554 hybrid contribution 1.057 0.940 -0.472 1.491 sum 10.919 -7.138 4.135 13.685 Atomic orbital electron populations 1.69886 1.06783 1.30841 1.39844 1.24732 0.94446 1.00763 0.88533 0.86221 0.79917 0.79824 0.79723 1.18889 1.20107 1.18871 1.30541 1.05945 1.11985 1.67145 0.88126 1.00454 0.72133 0.73125 0.72892 1.93376 1.73057 1.87607 1.45638 1.93360 1.72718 1.87479 1.45804 1.56152 1.55348 1.50949 1.26051 1.20767 0.87183 0.99773 0.87064 0.87816 1.22170 1.00346 0.99875 0.95884 1.21527 0.94859 1.01575 0.97692 1.21617 0.96760 0.99071 0.98689 1.21858 0.98061 1.01098 0.95109 1.24607 0.98435 0.85831 0.95949 0.87525 1.98682 1.98282 1.38693 1.80276 0.89814 0.76401 0.89655 0.91006 0.91726 0.91609 0.91077 0.91835 0.89775 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.60 13.19 55.43 0.73 -23.87 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 7 C -1.02 -27.34 9.58 30.60 0.29 -27.05 16 8 H 0.10 2.41 7.81 -52.48 -0.41 2.00 16 9 S 2.71 70.57 4.93 -107.50 -0.53 70.04 16 10 O -1.01 -29.51 18.02 -57.17 -1.03 -30.54 16 11 O -1.00 -28.38 17.28 -57.17 -0.99 -29.37 16 12 N -1.13 -22.16 5.44 -4.89 -0.03 -22.18 16 13 C 0.16 2.63 2.36 -67.93 -0.16 2.47 16 14 H 0.10 1.75 7.85 -51.93 -0.41 1.34 16 15 C -0.14 -2.19 5.32 -26.73 -0.14 -2.34 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.12 -1.28 5.72 -26.73 -0.15 -1.44 16 18 C -0.12 -1.29 5.52 -26.73 -0.15 -1.44 16 19 C 0.00 -0.04 3.27 -26.73 -0.09 -0.13 16 20 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 21 Cl -0.19 -2.49 24.99 -51.86 -1.30 -3.79 16 22 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.40 7.30 7.87 -34.47 -0.27 7.03 16 24 H 0.08 1.51 7.64 -51.93 -0.40 1.11 16 25 H 0.07 1.06 7.06 -51.93 -0.37 0.70 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.77 7.06 -51.93 -0.37 0.40 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 280.31 15.07 4.22 4.22 Total: -1.00 -33.35 280.31 -8.48 -41.83 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.89 Total: 6.43 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -0.65 Total: -27.93 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.70 Total: -46.05 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -2.02 Total: -59.91 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.53 Total: 70.04 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -1.30 Total: -3.79 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.35 -8.48 -41.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232022880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.032 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds