Wall clock time and date at job start Mon Mar 30 2020 04:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 120.00336 * 2 1 4 4 H 1.08003 * 120.00483 * 203.63522 * 3 2 1 5 5 C 1.38814 * 119.99792 * 23.63896 * 3 2 1 6 6 N 1.31625 * 119.99783 * 10.64363 * 5 3 2 7 7 Si 1.86799 * 120.00127 * 190.65460 * 5 3 2 8 8 H 1.48495 * 109.47439 * 89.99695 * 7 5 3 9 9 H 1.48503 * 109.46997 * 209.99580 * 7 5 3 10 10 H 1.48494 * 109.47162 * 329.99472 * 7 5 3 11 11 S 1.65598 * 119.99919 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40196 * 156.45807 * 11 2 1 13 13 O 1.42095 * 106.40770 * 23.53500 * 11 2 1 14 14 C 1.76199 * 107.21538 * 269.99403 * 11 2 1 15 15 C 1.38539 * 120.47096 * 115.00027 * 14 11 2 16 16 C 1.38657 * 118.50583 * 180.02562 * 15 14 11 17 17 C 1.38501 * 119.38160 * 359.97438 * 16 15 14 18 18 N 1.31566 * 120.91608 * 359.97438 * 17 16 15 19 19 C 1.32817 * 121.61466 * 0.02562 * 18 17 16 20 20 C 1.43204 * 119.73501 * 179.72164 * 19 18 17 21 21 N 3.53380 * 147.99630 * 57.04369 * 2 1 3 22 22 H 1.09000 * 109.46433 * 274.09656 * 1 2 3 23 23 H 1.08996 * 109.46977 * 34.09198 * 1 2 3 24 24 H 1.08994 * 109.47415 * 154.09566 * 1 2 3 25 25 H 0.97003 * 119.99822 * 179.97438 * 6 5 3 26 26 H 1.07996 * 120.74806 * 0.04093 * 15 14 11 27 27 H 1.08005 * 120.30584 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.54300 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1618 1.2252 -0.3750 5 6 1.5431 2.3376 0.4820 6 7 0.3990 2.2578 1.1280 7 14 2.3501 4.0008 0.2137 8 1 1.8715 4.5826 -1.0660 9 1 1.9957 4.9094 1.3336 10 1 3.8245 3.8327 0.1602 11 16 2.2929 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8864 1.6822 15 6 1.9616 -3.0252 2.2035 16 6 2.1941 -3.3425 3.5331 17 6 3.0054 -2.5193 4.2963 18 7 3.5569 -1.4437 3.7767 19 6 3.3599 -1.1041 2.5079 20 6 3.9753 0.0788 1.9856 21 7 4.4617 1.0188 1.5715 22 1 -0.3632 0.0734 1.0251 23 1 -0.3633 0.8510 -0.5760 24 1 -0.3634 -0.9243 -0.4489 25 1 -0.0247 3.0626 1.4652 26 1 1.3333 -3.6519 1.5881 27 1 1.7467 -4.2233 3.9696 28 1 3.1879 -2.7637 5.3324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234260578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:05 Heat of formation + Delta-G solvation = 16.898903 kcal Electronic energy + Delta-G solvation = -18572.074675 eV Core-core repulsion = 15523.650125 eV Total energy + Delta-G solvation = -3048.424550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88259 -36.34870 -35.84652 -35.37008 -34.50210 -32.38814 -31.69281 -31.29861 -26.61760 -24.52469 -23.81723 -23.43729 -19.19934 -18.63410 -17.49750 -16.97709 -16.35421 -16.15414 -14.98317 -14.75149 -14.43739 -14.13025 -13.55396 -13.29313 -12.96570 -12.71225 -12.30539 -12.20696 -12.15507 -11.93800 -11.46150 -11.12254 -11.06145 -10.79685 -10.64678 -10.45447 -10.33871 -10.19040 -9.82806 -9.45375 -9.27823 -8.99305 -8.25649 -6.76662 -4.19420 0.73999 1.26044 1.59415 3.07661 3.10381 3.20921 3.23309 3.32829 3.89549 3.97040 4.18570 4.37649 4.62136 4.83268 4.89587 5.10869 5.14914 5.49010 5.54110 5.81444 6.16086 6.19740 6.31353 6.67361 6.72689 6.95827 7.08949 7.27767 7.87070 8.10223 8.13101 8.42887 8.92208 10.16716 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.009872 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.299975 B = 2835.650140 C = 3289.092385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.792 5.792 3 C -0.227 4.227 4 H 0.124 0.876 5 C 0.037 3.963 6 N -0.819 5.819 7 Si 0.920 3.080 8 H -0.270 1.270 9 H -0.278 1.278 10 H -0.250 1.250 11 S 2.488 3.512 12 O -0.975 6.975 13 O -0.998 6.998 14 C -0.662 4.662 15 C 0.001 3.999 16 C -0.179 4.179 17 C 0.125 3.875 18 N -0.473 5.473 19 C 0.290 3.710 20 C 0.242 3.758 21 N -0.341 5.341 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.279 0.721 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -5.626 5.006 7.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.614 5.614 3 C -0.379 4.379 4 H 0.141 0.859 5 C -0.178 4.178 6 N -0.458 5.458 7 Si 0.744 3.256 8 H -0.195 1.195 9 H -0.203 1.203 10 H -0.173 1.173 11 S 2.585 3.415 12 O -0.964 6.964 13 O -0.987 6.987 14 C -0.740 4.740 15 C -0.026 4.026 16 C -0.200 4.200 17 C -0.035 4.035 18 N -0.183 5.183 19 C 0.151 3.849 20 C -0.076 4.076 21 N -0.018 5.018 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.048 -4.429 4.348 6.207 hybrid contribution -0.575 -0.243 0.749 0.975 sum -0.622 -4.672 5.097 6.943 Atomic orbital electron populations 1.21389 0.78741 1.00396 1.02132 1.54470 1.13434 1.18844 1.74681 1.20379 1.02232 0.82961 1.32336 0.85888 1.25850 0.96190 1.01567 0.94209 1.70089 1.15179 1.31102 1.29452 0.85937 0.81382 0.79781 0.78472 1.19486 1.20267 1.17328 1.14171 0.74391 0.75176 0.77801 1.93385 1.41269 1.84249 1.77511 1.93307 1.64982 1.61969 1.78453 1.33819 1.04021 1.02384 1.33800 1.21355 0.93331 0.93020 0.94856 1.22388 1.00585 1.01579 0.95416 1.22809 0.91798 0.88975 0.99874 1.67541 1.22024 1.17080 1.11701 1.15686 0.91665 0.88549 0.89011 1.24606 0.95285 0.92795 0.94905 1.81037 1.06535 1.08854 1.05335 0.92690 0.90482 0.93305 0.91009 0.83002 0.84102 0.81952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.56 8.92 59.85 0.53 3.09 15 2 N -0.79 -18.73 3.30 -66.69 -0.22 -18.95 15 3 C -0.23 -5.62 6.59 -15.06 -0.10 -5.72 15 4 H 0.12 3.18 6.11 -52.48 -0.32 2.86 15 5 C 0.04 0.87 5.14 -17.43 -0.09 0.78 15 6 N -0.82 -19.29 10.63 55.49 0.59 -18.70 15 7 Si 0.92 19.25 29.57 -169.99 -5.03 14.22 15 8 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 10 H -0.25 -5.38 7.11 56.52 0.40 -4.98 15 11 S 2.49 57.83 5.16 -107.50 -0.56 57.27 15 12 O -0.98 -25.17 15.58 -57.17 -0.89 -26.06 15 13 O -1.00 -23.53 15.61 -57.17 -0.89 -24.42 15 14 C -0.66 -13.58 5.96 -39.03 -0.23 -13.81 15 15 C 0.00 0.02 9.66 -39.32 -0.38 -0.36 15 16 C -0.18 -2.36 10.11 -39.33 -0.40 -2.76 15 17 C 0.12 1.75 11.18 -17.57 -0.20 1.56 15 18 N -0.47 -8.73 10.28 -11.16 -0.11 -8.85 15 19 C 0.29 6.12 6.58 -85.08 -0.56 5.56 15 20 C 0.24 5.59 11.84 -22.45 -0.27 5.32 15 21 N -0.34 -8.14 16.43 41.86 0.69 -7.45 15 22 H 0.05 1.18 7.40 -51.93 -0.38 0.79 15 23 H 0.08 1.66 7.25 -51.93 -0.38 1.28 15 24 H 0.05 0.97 6.93 -51.93 -0.36 0.61 15 25 H 0.28 6.17 8.31 -40.82 -0.34 5.83 15 26 H 0.15 2.28 7.44 -52.49 -0.39 1.89 15 27 H 0.14 1.25 8.06 -52.48 -0.42 0.83 15 28 H 0.16 1.56 8.06 -52.49 -0.42 1.13 15 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -29.47 263.42 -5.95 -35.42 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -1.81 Total: -0.11 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.69 Total: -6.35 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.94 Total: -53.95 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -1.78 Total: -50.48 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Atomic # 16 Polarization: 57.83 SS G_CDS: -0.56 Total: 57.27 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.47 -5.95 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234260578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.316 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds