Wall clock time and date at job start Mon Mar 30 2020 04:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 120.00336 * 2 1 4 4 H 1.08003 * 120.00483 * 203.63522 * 3 2 1 5 5 C 1.38814 * 119.99792 * 23.63896 * 3 2 1 6 6 N 1.31625 * 119.99783 * 10.64363 * 5 3 2 7 7 Si 1.86799 * 120.00127 * 190.65460 * 5 3 2 8 8 H 1.48495 * 109.47439 * 89.99695 * 7 5 3 9 9 H 1.48503 * 109.46997 * 209.99580 * 7 5 3 10 10 H 1.48494 * 109.47162 * 329.99472 * 7 5 3 11 11 S 1.65598 * 119.99919 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40196 * 156.45807 * 11 2 1 13 13 O 1.42095 * 106.40770 * 23.53500 * 11 2 1 14 14 C 1.76199 * 107.21538 * 269.99403 * 11 2 1 15 15 C 1.38539 * 120.47096 * 115.00027 * 14 11 2 16 16 C 1.38657 * 118.50583 * 180.02562 * 15 14 11 17 17 C 1.38501 * 119.38160 * 359.97438 * 16 15 14 18 18 N 1.31566 * 120.91608 * 359.97438 * 17 16 15 19 19 C 1.32817 * 121.61466 * 0.02562 * 18 17 16 20 20 C 1.43204 * 119.73501 * 179.72164 * 19 18 17 21 21 N 3.53380 * 147.99630 * 57.04369 * 2 1 3 22 22 H 1.09000 * 109.46433 * 274.09656 * 1 2 3 23 23 H 1.08996 * 109.46977 * 34.09198 * 1 2 3 24 24 H 1.08994 * 109.47415 * 154.09566 * 1 2 3 25 25 H 0.97003 * 119.99822 * 179.97438 * 6 5 3 26 26 H 1.07996 * 120.74806 * 0.04093 * 15 14 11 27 27 H 1.08005 * 120.30584 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.54300 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1618 1.2252 -0.3750 5 6 1.5431 2.3376 0.4820 6 7 0.3990 2.2578 1.1280 7 14 2.3501 4.0008 0.2137 8 1 1.8715 4.5826 -1.0660 9 1 1.9957 4.9094 1.3336 10 1 3.8245 3.8327 0.1602 11 16 2.2929 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8864 1.6822 15 6 1.9616 -3.0252 2.2035 16 6 2.1941 -3.3425 3.5331 17 6 3.0054 -2.5193 4.2963 18 7 3.5569 -1.4437 3.7767 19 6 3.3599 -1.1041 2.5079 20 6 3.9753 0.0788 1.9856 21 7 4.4617 1.0188 1.5715 22 1 -0.3632 0.0734 1.0251 23 1 -0.3633 0.8510 -0.5760 24 1 -0.3634 -0.9243 -0.4489 25 1 -0.0247 3.0626 1.4652 26 1 1.3333 -3.6519 1.5881 27 1 1.7467 -4.2233 3.9696 28 1 3.1879 -2.7637 5.3324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234260578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:05 Heat of formation + Delta-G solvation = -5.078240 kcal Electronic energy + Delta-G solvation = -18573.027675 eV Core-core repulsion = 15523.650125 eV Total energy + Delta-G solvation = -3049.377550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24806 -38.17886 -37.68393 -37.15369 -36.50824 -33.75291 -33.42800 -32.70153 -28.35470 -25.96428 -25.49432 -24.90400 -20.73378 -20.40433 -19.22347 -18.70806 -18.00122 -17.70307 -16.48456 -16.34260 -16.14954 -15.69500 -15.16312 -14.92422 -14.56171 -14.26963 -13.97390 -13.88808 -13.71693 -13.63964 -13.21497 -12.99280 -12.78779 -12.76731 -12.43068 -12.18013 -12.11406 -11.92022 -11.24365 -11.16120 -10.73060 -10.33712 -10.00712 -8.47836 -6.02860 -0.70397 -0.25387 -0.00987 1.38896 1.39966 1.51460 1.54525 1.85612 2.18341 2.43014 2.48056 2.73760 2.87362 3.09207 3.53582 3.80948 3.87905 4.08332 4.29026 4.39448 4.55156 4.85735 4.97296 5.02366 5.22481 5.32462 5.49716 5.58627 6.32702 6.35864 6.61719 6.67758 7.16269 8.48026 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.009872 C = 0.008511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.299975 B = 2835.650140 C = 3289.092385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.816 5.816 3 C -0.267 4.267 4 H 0.100 0.900 5 C 0.016 3.984 6 N -0.846 5.846 7 Si 0.956 3.044 8 H -0.259 1.259 9 H -0.271 1.271 10 H -0.268 1.268 11 S 2.539 3.461 12 O -1.005 7.005 13 O -1.000 7.000 14 C -0.688 4.688 15 C -0.007 4.007 16 C -0.145 4.145 17 C 0.135 3.865 18 N -0.489 5.489 19 C 0.265 3.735 20 C 0.241 3.759 21 N -0.374 5.374 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.281 0.719 26 H 0.170 0.830 27 H 0.202 0.798 28 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -8.520 7.288 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.641 5.641 3 C -0.414 4.414 4 H 0.117 0.883 5 C -0.196 4.196 6 N -0.485 5.485 7 Si 0.779 3.221 8 H -0.184 1.184 9 H -0.196 1.196 10 H -0.192 1.192 11 S 2.638 3.362 12 O -0.995 6.995 13 O -0.990 6.990 14 C -0.772 4.772 15 C -0.033 4.033 16 C -0.165 4.165 17 C -0.023 4.023 18 N -0.201 5.201 19 C 0.126 3.874 20 C -0.076 4.076 21 N -0.051 5.051 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.188 0.812 27 H 0.219 0.781 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.798 -7.218 6.576 9.798 hybrid contribution -0.284 0.182 0.232 0.409 sum -1.082 -7.036 6.808 9.851 Atomic orbital electron populations 1.21319 0.77834 1.00700 1.01893 1.53951 1.14001 1.18347 1.77798 1.19960 1.01496 0.84232 1.35665 0.88281 1.26128 0.96587 1.02765 0.94077 1.70103 1.15973 1.31360 1.31076 0.85441 0.79641 0.78049 0.78999 1.18352 1.19561 1.19186 1.10786 0.73414 0.74416 0.77629 1.93374 1.42593 1.84874 1.78674 1.93322 1.65097 1.61654 1.78895 1.33085 1.07324 1.05453 1.31382 1.21757 0.92885 0.91628 0.97053 1.23021 0.97943 1.02259 0.93270 1.23904 0.89546 0.86814 1.02078 1.67603 1.23096 1.19199 1.10199 1.15665 0.92902 0.88325 0.90497 1.25269 0.94791 0.93196 0.94384 1.81000 1.07957 1.10014 1.06140 0.93044 0.91236 0.91942 0.90871 0.81210 0.78066 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.55 8.92 127.77 1.14 6.69 15 2 N -0.82 -39.44 3.30 -364.91 -1.21 -40.64 15 3 C -0.27 -13.77 6.59 84.03 0.55 -13.22 15 4 H 0.10 5.47 6.11 -2.91 -0.02 5.46 15 5 C 0.02 0.78 5.14 84.86 0.44 1.22 15 6 N -0.85 -41.04 10.63 21.65 0.23 -40.81 15 7 Si 0.96 40.94 29.57 68.60 2.03 42.97 15 8 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 11 S 2.54 117.60 5.16 -56.49 -0.29 117.31 15 12 O -1.01 -52.98 15.58 -128.00 -1.99 -54.98 15 13 O -1.00 -45.69 15.61 -128.00 -2.00 -47.69 15 14 C -0.69 -27.02 5.96 22.63 0.13 -26.88 15 15 C -0.01 -0.20 9.66 22.44 0.22 0.01 15 16 C -0.14 -2.84 10.11 22.43 0.23 -2.61 15 17 C 0.14 2.99 11.18 84.80 0.95 3.94 15 18 N -0.49 -16.63 10.28 -189.21 -1.94 -18.58 15 19 C 0.26 10.89 6.58 40.53 0.27 11.15 15 20 C 0.24 11.41 11.84 88.33 1.05 12.45 15 21 N -0.37 -18.66 16.43 19.01 0.31 -18.35 15 22 H 0.05 2.23 7.40 -2.39 -0.02 2.21 15 23 H 0.07 3.07 7.25 -2.39 -0.02 3.06 15 24 H 0.06 2.45 6.93 -2.39 -0.02 2.43 15 25 H 0.28 12.77 8.31 -92.71 -0.77 12.00 15 26 H 0.17 4.28 7.44 -2.91 -0.02 4.26 15 27 H 0.20 1.66 8.06 -2.91 -0.02 1.63 15 28 H 0.22 2.42 8.06 -2.91 -0.02 2.40 15 Total: -1.00 -67.43 263.42 1.32 -66.11 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.21 Total: 1.90 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.97 Total: -7.23 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -2.61 Total: -118.39 kcal Atomic # 8 Polarization: -98.67 SS G_CDS: -3.99 Total: -102.67 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 117.60 SS G_CDS: -0.29 Total: 117.31 kcal Total: -67.43 1.32 -66.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234260578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds