Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47081 * 185.00082 * 12 9 7 14 14 N 1.30957 * 126.42796 * 89.71366 * 13 12 9 15 15 C 1.35268 * 105.58220 * 179.89412 * 14 13 12 16 16 C 1.48236 * 126.42647 * 180.11068 * 15 14 13 17 17 C 1.34922 * 122.97926 * 180.27920 * 16 15 14 18 18 S 1.76178 * 107.86435 * 180.02562 * 17 16 15 19 19 C 1.70913 * 90.44070 * 0.02562 * 18 17 16 20 20 N 1.28725 * 110.52002 * 359.72662 * 19 18 17 21 21 N 1.30863 * 107.14612 * 0.36897 * 15 14 13 22 22 O 1.21290 * 110.07918 * 359.76273 * 21 15 14 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 25 25 H 1.09001 * 109.47114 * 304.99535 * 12 9 7 26 26 H 1.08999 * 109.47369 * 64.99728 * 12 9 7 27 27 H 1.08002 * 126.06966 * 0.02562 * 17 16 15 28 28 H 1.08002 * 124.73734 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 6 1.4961 -4.9640 -0.1104 14 7 1.1797 -5.5762 -1.2240 15 6 0.5215 -6.6967 -0.8483 16 6 -0.0421 -7.7303 -1.7490 17 6 -0.6929 -8.8224 -1.2972 18 16 -1.1881 -9.7733 -2.6952 19 6 -0.4798 -8.6247 -3.7440 20 7 0.0449 -7.6616 -3.0702 21 7 0.4708 -6.6942 0.4594 22 8 1.0252 -5.7076 0.8957 23 1 -0.4851 -0.8400 -0.0004 24 1 0.9131 -2.5247 2.0025 25 1 2.9329 -3.5576 -0.8256 26 1 2.8070 -3.6537 0.9473 27 1 -0.8776 -9.0698 -0.2623 28 1 -0.4767 -8.6949 -4.8218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236511050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = 58.464379 kcal Electronic energy + Delta-G solvation = -17187.492944 eV Core-core repulsion = 14140.870809 eV Total energy + Delta-G solvation = -3046.622135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.21551 -39.93343 -36.68675 -35.40402 -33.12840 -32.22171 -30.67891 -29.28264 -26.19727 -25.30294 -24.07311 -22.51479 -21.35293 -19.80705 -18.83969 -17.86550 -17.41925 -16.72007 -16.06627 -15.20474 -14.78073 -14.67750 -14.15906 -13.90041 -13.77845 -13.58006 -12.84084 -12.35685 -12.12219 -11.78454 -11.66420 -11.21549 -10.79756 -10.73673 -10.44454 -10.17104 -10.15342 -9.93420 -9.80493 -9.43192 -8.91139 -8.55473 -8.22051 -6.44584 -4.30647 0.26424 0.99611 1.32709 1.36648 2.09559 3.10803 3.16518 3.38891 3.40601 3.43143 3.56094 4.01878 4.45395 4.50425 4.99505 5.04729 5.24007 5.27141 5.52570 5.72743 5.76867 5.92372 6.04292 6.27374 6.41145 7.25310 7.38296 7.79545 8.24169 8.40440 8.75053 8.94910 9.55845 10.95669 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.042015 B = 0.003858 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.268222 B = 7255.974660 C = 7518.549888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.036 3.964 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.651 4.651 8 H 0.057 0.943 9 C 0.218 3.782 10 H 0.059 0.941 11 O -0.581 6.581 12 C -0.054 4.054 13 C 0.218 3.782 14 N -0.468 5.468 15 C 0.228 3.772 16 C 0.147 3.853 17 C -0.218 4.218 18 S 0.141 5.859 19 C 0.027 3.973 20 N -0.437 5.437 21 N -0.380 5.380 22 O 0.085 5.915 23 H 0.285 0.715 24 H 0.358 0.642 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.187 0.813 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -18.023 -3.311 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.689 4.689 8 H 0.075 0.925 9 C 0.160 3.840 10 H 0.077 0.923 11 O -0.386 6.386 12 C -0.093 4.093 13 C -0.001 4.001 14 N -0.201 5.201 15 C -0.045 4.045 16 C 0.014 3.986 17 C -0.361 4.361 18 S 0.394 5.606 19 C -0.273 4.273 20 N -0.150 5.150 21 N -0.089 5.089 22 O 0.024 5.976 23 H 0.097 0.903 24 H 0.204 0.796 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.204 0.796 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.023 -17.625 -4.235 18.155 hybrid contribution 1.060 -0.876 0.853 1.618 sum 0.037 -18.501 -3.382 18.808 Atomic orbital electron populations 1.70577 1.07005 1.32459 1.42151 1.25851 0.96447 1.02622 0.92474 0.83479 0.74440 0.74682 0.77100 1.21375 1.21222 1.21227 1.22355 0.94603 0.91624 1.60296 0.92451 1.19644 0.88126 0.89949 0.86268 0.92341 1.86532 1.39434 1.96347 1.16258 1.21441 0.98519 0.84190 1.05172 1.29389 0.93915 0.96491 0.80310 1.72156 1.16309 1.05141 1.26473 1.22649 0.99980 0.93949 0.87897 1.16902 1.01156 0.92719 0.87782 1.27149 1.05712 0.98564 1.04689 1.83992 1.53377 1.26436 0.96835 1.28426 1.00447 0.93077 1.05333 1.66037 1.18502 1.25230 1.05195 1.74820 1.16726 1.05724 1.11585 1.85263 1.51501 1.24351 1.36502 0.90283 0.79598 0.87050 0.88576 0.79574 0.77566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.53 55.43 0.75 -25.84 15 2 C 0.04 0.98 5.40 -17.82 -0.10 0.89 15 3 Si 1.08 24.19 29.90 -169.99 -5.08 19.11 15 4 H -0.29 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.29 -6.39 7.11 56.52 0.40 -5.98 15 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.65 -17.05 8.76 -34.44 -0.30 -17.35 15 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 15 9 C 0.22 5.25 2.42 -27.88 -0.07 5.18 15 10 H 0.06 1.59 8.01 -51.93 -0.42 1.17 15 11 O -0.58 -13.98 11.76 -35.23 -0.41 -14.39 15 12 C -0.05 -1.03 5.46 -27.88 -0.15 -1.18 15 13 C 0.22 4.28 7.52 -12.99 -0.10 4.19 15 14 N -0.47 -9.75 11.58 -9.86 -0.11 -9.86 15 15 C 0.23 4.36 8.01 -156.07 -1.25 3.11 15 16 C 0.15 2.37 6.72 -84.61 -0.57 1.80 15 17 C -0.22 -2.67 11.11 29.56 0.33 -2.34 15 18 S 0.14 1.20 23.21 -107.50 -2.50 -1.29 15 19 C 0.03 0.28 12.19 51.46 0.63 0.91 15 20 N -0.44 -6.75 10.55 -12.29 -0.13 -6.88 15 21 N -0.38 -7.12 12.09 30.99 0.37 -6.74 15 22 O 0.08 1.61 11.29 18.02 0.20 1.81 15 23 H 0.29 8.75 6.47 -40.82 -0.26 8.49 15 24 H 0.36 7.41 9.04 45.56 0.41 7.82 15 25 H 0.11 2.04 8.14 -51.93 -0.42 1.62 15 26 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 27 H 0.19 1.99 8.06 -52.49 -0.42 1.57 15 28 H 0.21 1.28 8.06 -52.49 -0.42 0.86 15 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -33.11 276.48 -5.48 -38.59 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -1.16 Total: 6.12 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.58 Total: -4.80 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.88 Total: -49.32 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.21 Total: -12.58 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.11 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.50 Total: -1.29 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.11 -5.48 -38.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236511050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.054 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds