Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47081 * 185.00082 * 12 9 7 14 14 N 1.30957 * 126.42796 * 89.71366 * 13 12 9 15 15 C 1.35268 * 105.58220 * 179.89412 * 14 13 12 16 16 C 1.48236 * 126.42647 * 180.11068 * 15 14 13 17 17 C 1.34922 * 122.97926 * 180.27920 * 16 15 14 18 18 S 1.76178 * 107.86435 * 180.02562 * 17 16 15 19 19 C 1.70913 * 90.44070 * 0.02562 * 18 17 16 20 20 N 1.28725 * 110.52002 * 359.72662 * 19 18 17 21 21 N 1.30863 * 107.14612 * 0.36897 * 15 14 13 22 22 O 1.21290 * 110.07918 * 359.76273 * 21 15 14 23 23 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 24 24 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 25 25 H 1.09001 * 109.47114 * 304.99535 * 12 9 7 26 26 H 1.08999 * 109.47369 * 64.99728 * 12 9 7 27 27 H 1.08002 * 126.06966 * 0.02562 * 17 16 15 28 28 H 1.08002 * 124.73734 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 6 1.4961 -4.9640 -0.1104 14 7 1.1797 -5.5762 -1.2240 15 6 0.5215 -6.6967 -0.8483 16 6 -0.0421 -7.7303 -1.7490 17 6 -0.6929 -8.8224 -1.2972 18 16 -1.1881 -9.7733 -2.6952 19 6 -0.4798 -8.6247 -3.7440 20 7 0.0449 -7.6616 -3.0702 21 7 0.4708 -6.6942 0.4594 22 8 1.0252 -5.7076 0.8957 23 1 -0.4851 -0.8400 -0.0004 24 1 0.9131 -2.5247 2.0025 25 1 2.9329 -3.5576 -0.8256 26 1 2.8070 -3.6537 0.9473 27 1 -0.8776 -9.0698 -0.2623 28 1 -0.4767 -8.6949 -4.8218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236511050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = 31.065210 kcal Electronic energy + Delta-G solvation = -17188.681061 eV Core-core repulsion = 14140.870809 eV Total energy + Delta-G solvation = -3047.810253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.67371 -40.89798 -38.56174 -36.88577 -34.64330 -34.28061 -31.90544 -30.80492 -27.40779 -27.01591 -25.41994 -24.15764 -22.96398 -20.99896 -19.87869 -19.53766 -19.16653 -18.08315 -17.25021 -16.89227 -16.10371 -15.79316 -15.69305 -15.57172 -15.43425 -14.70135 -14.39851 -14.01892 -13.72551 -13.10636 -12.94178 -12.81435 -12.57992 -12.29817 -12.24095 -11.86089 -11.82351 -11.17574 -10.80597 -10.67134 -10.64895 -10.20203 -9.88596 -8.62055 -6.48210 -0.69002 0.00053 0.18078 0.49019 0.79517 1.58828 1.67316 1.68239 1.83211 1.91668 2.24492 2.58244 2.68806 3.17660 3.56848 3.76001 4.00351 4.04674 4.18886 4.19339 4.23938 4.45519 4.69233 4.81801 4.85261 5.30969 5.76367 6.14183 6.49604 6.52947 6.94139 7.14685 7.49068 8.75905 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.042015 B = 0.003858 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.268222 B = 7255.974660 C = 7518.549888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.124 2.876 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.650 4.650 8 H 0.071 0.929 9 C 0.220 3.780 10 H 0.015 0.985 11 O -0.594 6.594 12 C -0.039 4.039 13 C 0.215 3.785 14 N -0.497 5.497 15 C 0.224 3.776 16 C 0.101 3.899 17 C -0.223 4.223 18 S 0.251 5.749 19 C 0.022 3.978 20 N -0.491 5.491 21 N -0.386 5.386 22 O 0.081 5.919 23 H 0.266 0.734 24 H 0.373 0.627 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.196 0.804 28 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 -19.607 -3.711 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.946 3.054 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.688 4.688 8 H 0.089 0.911 9 C 0.162 3.838 10 H 0.033 0.967 11 O -0.401 6.401 12 C -0.078 4.078 13 C -0.004 4.004 14 N -0.230 5.230 15 C -0.048 4.048 16 C -0.032 4.032 17 C -0.367 4.367 18 S 0.505 5.495 19 C -0.276 4.276 20 N -0.205 5.205 21 N -0.095 5.095 22 O 0.022 5.978 23 H 0.076 0.924 24 H 0.221 0.779 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.213 0.787 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.370 -19.240 -4.621 19.791 hybrid contribution 0.761 -0.618 0.904 1.333 sum 0.391 -19.859 -3.717 20.207 Atomic orbital electron populations 1.70728 1.08361 1.31224 1.45600 1.27385 0.96378 1.06806 0.91583 0.82862 0.74644 0.70852 0.77077 1.18560 1.21219 1.20782 1.22756 0.95390 0.92328 1.58302 0.91070 1.19383 0.88024 0.91544 0.84888 0.96684 1.86475 1.40148 1.96479 1.17009 1.21210 0.97200 0.82074 1.07283 1.29360 0.93952 0.96670 0.80446 1.72140 1.17296 1.06297 1.27307 1.23296 0.99064 0.94021 0.88421 1.16975 1.04166 0.93739 0.88304 1.27502 1.03993 0.98111 1.07067 1.83637 1.50162 1.22870 0.92866 1.29072 0.98871 0.92506 1.07193 1.66002 1.21197 1.28046 1.05277 1.74767 1.17316 1.05798 1.11649 1.85231 1.51673 1.24526 1.36338 0.92375 0.77912 0.86221 0.85360 0.78651 0.74048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.65 13.53 21.45 0.29 -56.36 15 2 C -0.02 -1.09 5.40 84.66 0.46 -0.63 15 3 Si 1.12 48.06 29.90 68.60 2.05 50.11 15 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 5 H -0.29 -12.15 7.11 99.48 0.71 -11.45 15 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 7 C -0.65 -33.88 8.76 25.60 0.22 -33.66 15 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 9 C 0.22 10.78 2.42 29.85 0.07 10.85 15 10 H 0.02 0.87 8.01 -2.39 -0.02 0.85 15 11 O -0.59 -29.18 11.76 -148.98 -1.75 -30.93 15 12 C -0.04 -1.46 5.46 29.85 0.16 -1.30 15 13 C 0.22 8.58 7.52 88.36 0.66 9.24 15 14 N -0.50 -21.30 11.58 -302.36 -3.50 -24.80 15 15 C 0.22 8.79 8.01 137.20 1.10 9.89 15 16 C 0.10 3.25 6.72 40.93 0.27 3.53 15 17 C -0.22 -5.13 11.11 67.06 0.75 -4.38 15 18 S 0.25 3.41 23.21 -56.49 -1.31 2.10 15 19 C 0.02 0.41 12.19 130.70 1.59 2.00 15 20 N -0.49 -14.98 10.55 -192.80 -2.03 -17.02 15 21 N -0.39 -14.66 12.09 -58.96 -0.71 -15.37 15 22 O 0.08 3.11 11.29 74.55 0.84 3.96 15 23 H 0.27 17.01 6.47 -92.71 -0.60 16.41 15 24 H 0.37 15.44 9.04 -74.05 -0.67 14.77 15 25 H 0.12 4.32 8.14 -2.39 -0.02 4.30 15 26 H 0.13 3.99 8.14 -2.39 -0.02 3.97 15 27 H 0.20 3.90 8.06 -2.91 -0.02 3.88 15 28 H 0.24 2.21 8.06 -2.91 -0.02 2.19 15 Total: -1.00 -74.64 276.48 -0.11 -74.75 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.72 Total: 18.03 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.29 Total: -4.46 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -5.96 Total: -113.56 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.91 Total: -26.97 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.11 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.31 Total: 2.10 kcal Total: -74.64 -0.11 -74.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236511050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.818 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds