Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00453 * 2 1 4 4 H 1.08006 * 120.00266 * 204.41912 * 3 2 1 5 5 C 1.38816 * 120.00130 * 24.41544 * 3 2 1 6 6 N 1.31619 * 119.99840 * 8.16343 * 5 3 2 7 7 Si 1.86794 * 120.00022 * 188.16901 * 5 3 2 8 8 H 1.48505 * 109.47380 * 90.00127 * 7 5 3 9 9 H 1.48504 * 109.46942 * 209.99691 * 7 5 3 10 10 H 1.48499 * 109.47472 * 329.99958 * 7 5 3 11 11 S 1.65598 * 119.99636 * 179.97438 * 2 1 3 12 12 O 1.42101 * 106.40028 * 156.46173 * 11 2 1 13 13 O 1.42106 * 106.40122 * 23.54582 * 11 2 1 14 14 C 1.76199 * 107.22269 * 270.00105 * 11 2 1 15 15 C 1.32572 * 119.99654 * 117.89072 * 14 11 2 16 16 C 1.47805 * 120.00274 * 16.92988 * 15 14 11 17 17 C 1.39542 * 120.13821 * 43.83275 * 16 15 14 18 18 C 1.37980 * 119.85380 * 179.97438 * 17 16 15 19 19 C 1.38342 * 120.13990 * 0.02562 * 18 17 16 20 20 C 1.38348 * 120.28842 * 0.02562 * 19 18 17 21 21 C 1.37971 * 120.14222 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.47439 * 274.83918 * 1 2 3 23 23 H 1.09005 * 109.46871 * 34.83531 * 1 2 3 24 24 H 1.08994 * 109.47562 * 154.83196 * 1 2 3 25 25 H 0.97002 * 120.00124 * 180.02562 * 6 5 3 26 26 H 1.07992 * 120.00058 * 297.89393 * 14 11 2 27 27 H 1.08000 * 119.99200 * 196.93126 * 15 14 11 28 28 H 1.07994 * 120.07204 * 359.97438 * 17 16 15 29 29 H 1.07988 * 119.92837 * 179.72516 * 18 17 16 30 30 H 1.08004 * 119.85475 * 179.97438 * 19 18 17 31 31 H 1.08004 * 119.92853 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.07365 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1573 1.2276 -0.3867 5 6 1.5489 2.3343 0.4969 6 7 0.3885 2.2560 1.1131 7 14 2.3871 3.9908 0.2910 8 1 1.9486 4.6125 -0.9844 9 1 2.0193 4.8761 1.4252 10 1 3.8598 3.8011 0.2685 11 16 2.2929 -1.4342 0.0006 12 8 3.5758 -1.1571 -0.5439 13 8 1.4111 -2.4067 -0.5435 14 6 2.5537 -1.8853 1.6838 15 6 2.0294 -3.0066 2.1584 16 6 1.5566 -4.0531 1.2278 17 6 2.3278 -4.4056 0.1195 18 6 1.8810 -5.3837 -0.7451 19 6 0.6712 -6.0141 -0.5153 20 6 -0.0986 -5.6685 0.5810 21 6 0.3363 -4.6913 1.4526 22 1 -0.3634 0.0867 1.0240 23 1 -0.3633 0.8436 -0.5871 24 1 -0.3634 -0.9300 -0.4370 25 1 -0.0316 3.0586 1.4600 26 1 3.1405 -1.2483 2.3289 27 1 1.9478 -3.1554 3.2250 28 1 3.2722 -3.9139 -0.0611 29 1 2.4748 -5.6543 -1.6056 30 1 0.3257 -6.7788 -1.1953 31 1 -1.0423 -6.1641 0.7546 32 1 -0.2653 -4.4227 2.3083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255469969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = -4.643487 kcal Electronic energy + Delta-G solvation = -18497.327370 eV Core-core repulsion = 15551.509016 eV Total energy + Delta-G solvation = -2945.818354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.84884 -35.78123 -35.64203 -34.50602 -33.66491 -31.47796 -30.52156 -28.98337 -26.43950 -23.53050 -23.05788 -22.06922 -20.11526 -18.33055 -17.29246 -16.80256 -16.05026 -15.61908 -15.00468 -14.47465 -14.42950 -14.08663 -13.64110 -13.22349 -13.04866 -12.77205 -12.52865 -12.17604 -11.79075 -11.36249 -11.03635 -11.02543 -10.88095 -10.80615 -10.64896 -10.62457 -10.24243 -10.15227 -9.82072 -9.47778 -9.26537 -8.36881 -8.10655 -7.84137 -6.53763 -4.07110 1.22032 1.81045 1.90974 2.50457 3.11386 3.15535 3.20481 3.98473 4.24785 4.49391 4.78143 5.04052 5.09429 5.24097 5.30916 5.40083 5.68392 5.76067 5.86988 6.09259 6.29138 6.39276 6.42578 6.59604 6.70188 6.85643 6.88835 6.91918 7.03254 7.13199 7.25792 7.40500 7.46279 8.28735 8.66245 9.12706 10.42243 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.038573 B = 0.006140 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.726350 B = 4559.491700 C = 4738.826793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.812 5.812 3 C -0.257 4.257 4 H 0.114 0.886 5 C 0.031 3.969 6 N -0.844 5.844 7 Si 0.928 3.072 8 H -0.272 1.272 9 H -0.280 1.280 10 H -0.263 1.263 11 S 2.537 3.463 12 O -0.990 6.990 13 O -0.982 6.982 14 C -0.721 4.721 15 C -0.006 4.006 16 C -0.067 4.067 17 C -0.049 4.049 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.132 4.132 21 C -0.096 4.096 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.274 0.726 26 H 0.144 0.856 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -8.349 1.191 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.637 5.637 3 C -0.402 4.402 4 H 0.132 0.868 5 C -0.180 4.180 6 N -0.484 5.484 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.206 1.206 10 H -0.187 1.187 11 S 2.635 3.365 12 O -0.980 6.980 13 O -0.971 6.971 14 C -0.820 4.820 15 C -0.026 4.026 16 C -0.067 4.067 17 C -0.068 4.068 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.115 4.115 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.133 -8.955 0.615 9.048 hybrid contribution 0.246 1.152 1.116 1.622 sum -0.887 -7.803 1.731 8.042 Atomic orbital electron populations 1.21280 0.79086 0.99824 1.01892 1.53783 1.13139 1.18636 1.78139 1.19974 1.02052 0.83797 1.34372 0.86825 1.25770 0.96447 1.01089 0.94689 1.70097 1.15284 1.30363 1.32638 0.85887 0.80074 0.80466 0.78267 1.19782 1.20554 1.18725 1.10297 0.74248 0.74298 0.77691 1.93373 1.41467 1.84847 1.78345 1.93525 1.65552 1.59439 1.78616 1.34991 1.06945 1.04783 1.35233 1.21455 0.91650 0.91348 0.98163 1.19048 0.95696 0.96551 0.95427 1.20979 0.98358 0.94961 0.92529 1.20809 0.96874 0.97300 0.98935 1.21035 0.94785 0.99892 0.97415 1.20874 0.99650 0.98691 0.95828 1.21006 0.95006 0.95968 0.99487 0.93008 0.90977 0.93672 0.91585 0.83793 0.86995 0.87552 0.86425 0.86698 0.86570 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.89 8.92 59.85 0.53 3.43 16 2 N -0.81 -20.09 3.31 -66.69 -0.22 -20.31 16 3 C -0.26 -6.58 9.42 -15.06 -0.14 -6.72 16 4 H 0.11 2.92 7.17 -52.48 -0.38 2.54 16 5 C 0.03 0.76 5.19 -17.43 -0.09 0.67 16 6 N -0.84 -20.91 10.54 55.49 0.58 -20.33 16 7 Si 0.93 18.90 29.56 -169.99 -5.02 13.88 16 8 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 9 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 10 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 11 S 2.54 59.90 4.66 -107.50 -0.50 59.40 16 12 O -0.99 -25.95 16.82 -57.17 -0.96 -26.92 16 13 O -0.98 -23.08 11.45 -57.17 -0.65 -23.74 16 14 C -0.72 -15.21 10.10 28.83 0.29 -14.92 16 15 C -0.01 -0.11 9.73 -37.58 -0.37 -0.48 16 16 C -0.07 -1.24 4.04 -105.02 -0.42 -1.67 16 17 C -0.05 -0.93 6.34 -39.19 -0.25 -1.18 16 18 C -0.12 -2.01 10.03 -39.64 -0.40 -2.40 16 19 C -0.11 -1.68 10.04 -39.50 -0.40 -2.08 16 20 C -0.13 -1.96 10.03 -39.64 -0.40 -2.36 16 21 C -0.10 -1.58 9.79 -39.20 -0.38 -1.97 16 22 H 0.05 1.21 7.35 -51.93 -0.38 0.83 16 23 H 0.07 1.68 7.28 -51.93 -0.38 1.30 16 24 H 0.04 0.97 6.92 -51.93 -0.36 0.61 16 25 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 26 H 0.14 2.94 8.06 -52.49 -0.42 2.51 16 27 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.11 2.04 7.20 -52.49 -0.38 1.66 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -29.43 283.88 -8.07 -37.50 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.55 Total: 5.91 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -2.02 Total: -29.67 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.36 Total: -40.64 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.62 Total: -50.65 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 59.90 SS G_CDS: -0.50 Total: 59.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.43 -8.07 -37.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255469969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.855 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds