Wall clock time and date at job start Mon Mar 30 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31491 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48506 * 109.47110 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47552 * 119.99247 * 3 2 1 6 6 H 1.48496 * 109.47345 * 239.99663 * 3 2 1 7 7 C 1.38730 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99420 * 155.66683 * 7 2 1 9 9 N 1.37386 * 120.00059 * 335.67193 * 7 2 1 10 10 C 1.37890 * 126.53271 * 339.75812 * 9 7 2 11 11 C 1.35353 * 106.87605 * 179.97438 * 10 9 7 12 12 N 1.39900 * 125.82563 * 179.97438 * 11 10 9 13 13 C 1.46800 * 111.00394 * 291.87874 * 12 11 10 14 14 C 1.53015 * 109.89467 * 189.45494 * 13 12 11 15 15 C 1.53378 * 109.13281 * 297.14116 * 14 13 12 16 16 C 1.51415 * 108.11929 * 52.47060 * 15 14 13 17 17 O 1.20760 * 121.00803 * 130.92603 * 16 15 14 18 18 C 1.47098 * 111.00219 * 56.04589 * 12 11 10 19 19 N 1.34627 * 108.34647 * 359.97438 * 11 10 9 20 20 C 1.31389 * 109.40241 * 359.76023 * 19 11 10 21 21 S 1.76198 * 125.78084 * 180.25914 * 20 19 11 22 22 H 0.97006 * 120.00152 * 174.16758 * 1 2 3 23 23 H 1.08001 * 126.56707 * 359.97438 * 10 9 7 24 24 H 1.09003 * 109.39561 * 309.58769 * 13 12 11 25 25 H 1.08996 * 109.39858 * 69.31792 * 13 12 11 26 26 H 1.09000 * 109.52320 * 177.24556 * 14 13 12 27 27 H 1.08996 * 109.58482 * 57.07945 * 14 13 12 28 28 H 1.09003 * 109.73132 * 292.80676 * 15 14 13 29 29 H 1.09002 * 109.76740 * 172.14574 * 15 14 13 30 30 H 1.09000 * 109.62383 * 299.46396 * 18 12 11 31 31 H 1.09002 * 109.62209 * 60.02131 * 18 12 11 32 32 H 1.40999 * 100.00111 * 268.54058 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1026 1.6966 1.2125 6 1 3.1027 1.6964 -1.2124 7 6 2.0086 -1.2014 0.0005 8 1 3.0166 -1.2430 -0.3849 9 7 1.4131 -2.3382 0.4912 10 6 0.3339 -2.3953 1.3475 11 6 0.0784 -3.7056 1.5708 12 7 -0.9387 -4.2143 2.3857 13 6 -0.6801 -3.9142 3.7992 14 6 -1.6708 -4.6752 4.6828 15 6 -3.0936 -4.1934 4.3729 16 6 -3.3095 -4.2936 2.8776 17 8 -4.2946 -4.8261 2.4256 18 6 -2.2538 -3.7057 1.9668 19 7 0.9701 -4.4358 0.8750 20 6 1.7746 -3.6316 0.2175 21 16 3.0969 -4.1312 -0.8344 22 1 -0.4851 -0.8357 -0.0854 23 1 -0.2046 -1.5554 1.7609 24 1 0.3365 -4.2148 4.0530 25 1 -0.7924 -2.8433 3.9684 26 1 -1.4426 -4.4866 5.7319 27 1 -1.5955 -5.7434 4.4800 28 1 -3.2094 -3.1579 4.6931 29 1 -3.8170 -4.8221 4.8922 30 1 -2.2675 -2.6185 2.0443 31 1 -2.4509 -4.0045 0.9373 32 1 4.1563 -4.1496 0.0959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257608442.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:31 Heat of formation + Delta-G solvation = 10.103010 kcal Electronic energy + Delta-G solvation = -18218.391101 eV Core-core repulsion = 15305.504953 eV Total energy + Delta-G solvation = -2912.886147 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.67041 -40.91366 -38.44717 -36.30105 -34.08838 -32.55497 -30.31893 -29.44633 -27.22920 -25.55088 -23.44552 -22.88571 -21.29962 -21.00395 -20.03281 -18.38570 -17.75438 -16.89941 -16.84310 -16.36708 -16.14829 -15.89523 -15.79361 -15.31632 -15.08697 -14.82486 -14.60685 -14.00102 -13.89198 -13.37529 -13.00257 -12.79326 -12.35415 -12.22082 -12.02186 -11.97035 -11.91670 -11.55131 -11.03577 -10.67656 -10.59061 -9.54882 -9.47997 -9.18221 -9.07352 -6.73691 0.46165 0.74698 0.87270 1.46089 1.49980 1.71318 1.79304 2.13897 2.16754 2.48526 2.72679 2.98539 3.11422 3.69166 3.85463 4.02558 4.18999 4.30976 4.38780 4.42805 4.56816 4.67479 4.75600 4.88606 4.93721 5.04403 5.22165 5.29187 5.50032 5.70815 5.90871 6.31520 6.34454 6.62180 6.89957 7.24429 7.91924 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.006539 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.378218 B = 4280.661902 C = 5198.973600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C -0.001 4.001 3 Si 1.132 2.868 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.253 1.253 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.235 5.235 10 C -0.124 4.124 11 C 0.147 3.853 12 N -0.457 5.457 13 C 0.055 3.945 14 C -0.097 4.097 15 C -0.159 4.159 16 C 0.381 3.619 17 O -0.490 6.490 18 C 0.016 3.984 19 N -0.475 5.475 20 C 0.053 3.947 21 S -0.020 6.020 22 H 0.277 0.723 23 H 0.156 0.844 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 0.114 8.586 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.212 4.212 3 Si 0.947 3.053 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.142 0.858 9 N 0.100 4.900 10 C -0.273 4.273 11 C -0.087 4.087 12 N -0.181 5.181 13 C -0.071 4.071 14 C -0.135 4.135 15 C -0.196 4.196 16 C 0.258 3.742 17 O -0.365 6.365 18 C -0.113 4.113 19 N -0.198 5.198 20 C -0.308 4.308 21 S 0.132 5.868 22 H 0.089 0.911 23 H 0.173 0.827 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.282 -0.133 7.473 7.479 hybrid contribution -0.080 0.192 0.765 0.793 sum 0.201 0.059 8.238 8.241 Atomic orbital electron populations 1.70831 1.08269 1.32359 1.35035 1.28502 0.95847 1.06206 0.90692 0.82755 0.74373 0.68760 0.79393 1.19729 1.18597 1.17664 1.21399 1.02825 0.86368 1.45834 0.85842 1.42397 1.18136 1.06202 1.23302 1.22801 0.99969 0.99050 1.05441 1.18597 0.98576 0.87356 1.04122 1.58584 0.97916 1.58981 1.02622 1.22310 1.00664 0.99146 0.85023 1.21580 0.90888 1.00397 1.00655 1.22415 0.99911 1.06176 0.91089 1.25145 0.83061 0.71997 0.94034 1.90379 1.30370 1.34861 1.80848 1.22846 0.88892 0.99653 0.99892 1.70240 1.05840 1.33001 1.10731 1.24168 1.09375 0.82239 1.14995 1.85882 1.00563 1.88653 1.11668 0.91110 0.82660 0.91091 0.93474 0.86225 0.91094 0.85738 0.87168 0.90588 0.90985 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.35 12.61 21.62 0.27 -42.08 16 2 C 0.00 -0.06 5.20 84.86 0.44 0.38 16 3 Si 1.13 39.05 29.98 68.60 2.06 41.10 16 4 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 6 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 7 C -0.43 -21.34 9.69 83.94 0.81 -20.53 16 8 H 0.12 5.78 7.76 -2.91 -0.02 5.75 16 9 N -0.23 -11.93 2.86 -348.69 -1.00 -12.93 16 10 C -0.12 -5.97 8.46 83.07 0.70 -5.26 16 11 C 0.15 6.80 5.94 131.20 0.78 7.58 16 12 N -0.46 -17.36 4.76 -705.51 -3.36 -20.71 16 13 C 0.06 1.61 5.20 86.33 0.45 2.06 16 14 C -0.10 -1.96 6.13 30.73 0.19 -1.77 16 15 C -0.16 -3.13 6.24 30.20 0.19 -2.95 16 16 C 0.38 11.46 6.87 29.52 0.20 11.66 16 17 O -0.49 -17.78 17.90 -1.45 -0.03 -17.80 16 18 C 0.02 0.55 5.47 85.71 0.47 1.02 16 19 N -0.48 -24.02 11.30 -192.50 -2.17 -26.19 16 20 C 0.05 2.62 8.22 179.35 1.47 4.10 16 21 S -0.02 -0.79 25.73 -56.49 -1.45 -2.25 16 22 H 0.28 14.78 6.50 -92.70 -0.60 14.17 16 23 H 0.16 7.40 6.83 -2.91 -0.02 7.38 16 24 H 0.07 2.21 8.06 -2.39 -0.02 2.19 16 25 H 0.05 1.30 8.13 -2.39 -0.02 1.29 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.58 7.66 -2.39 -0.02 2.56 16 31 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.09 3.08 9.55 73.80 0.70 3.79 16 Total: -1.00 -63.54 289.07 2.06 -61.48 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 2.03 Total: 23.10 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.71 Total: -3.71 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -6.25 Total: -101.91 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.03 Total: -17.80 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.06 Total: 41.10 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.45 Total: -2.25 kcal Total: -63.54 2.06 -61.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257608442.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.581 kcal (2) G-P(sol) polarization free energy of solvation -63.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds