Wall clock time and date at job start Mon Mar 30 2020 04:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86806 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47070 * 239.99922 * 3 2 1 5 5 H 1.48496 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46966 * 120.00485 * 3 2 1 7 7 C 1.38793 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99926 * 179.97438 * 7 2 1 9 9 N 1.36851 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.39294 * 120.00044 * 180.02562 * 9 7 2 11 11 C 1.39122 * 120.15098 * 0.02562 * 10 9 7 12 12 C 1.37723 * 119.31831 * 180.59203 * 11 10 9 13 13 C 1.38925 * 120.79851 * 359.63759 * 12 11 10 14 14 C 1.37662 * 120.37508 * 359.88245 * 13 12 11 15 15 C 1.38539 * 120.15029 * 180.02562 * 10 9 7 16 16 C 1.50026 * 124.68129 * 181.13697 * 14 13 12 17 17 C 1.51825 * 113.86448 * 335.77695 * 16 14 13 18 18 C 1.53610 * 109.06691 * 61.43032 * 17 16 14 19 19 S 1.76598 * 117.77501 * 179.28311 * 13 12 11 20 20 O 1.42102 * 104.39447 * 52.44562 * 19 13 12 21 21 O 1.42097 * 104.39870 * 284.25069 * 19 13 12 22 22 H 0.96993 * 120.00202 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99413 * 0.02562 * 9 7 2 24 24 H 1.08002 * 120.33623 * 0.30801 * 11 10 9 25 25 H 1.07999 * 119.59970 * 179.89478 * 12 11 10 26 26 H 1.08001 * 119.53728 * 359.64090 * 15 10 9 27 27 H 1.09004 * 108.60454 * 96.90888 * 16 14 13 28 28 H 1.08998 * 108.60381 * 214.63702 * 16 14 13 29 29 H 1.09001 * 109.53820 * 181.30637 * 17 16 14 30 30 H 1.08995 * 109.53457 * 301.47260 * 17 16 14 31 31 H 1.09004 * 109.94554 * 47.88534 * 18 17 16 32 32 H 1.09001 * 109.94280 * 169.04336 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2849 2.7465 0.0006 6 1 3.1037 1.6964 1.2124 7 6 2.0100 -1.2019 -0.0005 8 1 3.0900 -1.2019 -0.0010 9 7 1.3258 -2.3872 -0.0005 10 6 2.0223 -3.5934 -0.0005 11 6 3.4135 -3.5970 0.0000 12 6 4.0848 -4.7995 -0.0124 13 6 3.3896 -6.0023 -0.0179 14 6 2.0130 -6.0106 -0.0084 15 6 1.3328 -4.7951 -0.0011 16 6 1.1670 -7.2494 0.0113 17 6 1.8623 -8.4772 -0.5492 18 6 3.1009 -8.7863 0.3053 19 16 4.3303 -7.4964 -0.0534 20 8 5.2457 -7.3633 1.0253 21 8 4.7839 -7.5965 -1.3963 22 1 -0.4850 0.8400 0.0004 23 1 0.3558 -2.3871 -0.0005 24 1 3.9614 -2.6663 0.0054 25 1 5.1648 -4.8076 -0.0138 26 1 0.2529 -4.7893 0.0044 27 1 0.8752 -7.4549 1.0413 28 1 0.2650 -7.0639 -0.5719 29 1 1.1798 -9.3267 -0.5226 30 1 2.1664 -8.2859 -1.5782 31 1 2.8377 -8.7653 1.3629 32 1 3.4998 -9.7657 0.0411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258785598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:54 Heat of formation + Delta-G solvation = -53.240012 kcal Electronic energy + Delta-G solvation = -17938.370381 eV Core-core repulsion = 14990.444723 eV Total energy + Delta-G solvation = -2947.925658 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.86329 -36.62107 -36.21773 -35.45084 -34.47394 -32.13521 -30.49178 -28.47576 -26.83058 -24.98980 -22.65407 -21.89498 -20.19302 -18.37873 -17.95903 -16.85655 -16.38970 -16.06975 -15.31620 -14.93754 -14.68893 -14.25015 -13.98889 -13.54895 -13.11542 -13.09147 -12.49099 -12.45349 -12.03583 -11.76546 -11.65220 -11.55798 -11.50239 -11.32094 -11.20326 -10.94129 -10.56731 -10.41593 -10.30931 -10.06155 -9.66787 -9.04031 -8.01133 -7.16220 -6.86174 -4.02947 0.64274 1.98719 2.30764 3.03112 3.03511 3.05541 3.48106 3.84359 4.11129 4.30399 4.38914 4.63736 4.87788 4.93208 5.00155 5.22964 5.34923 5.41137 5.56591 5.65409 5.78195 5.96401 6.06899 6.15470 6.26772 6.69788 6.83051 6.92705 7.05483 7.19278 7.28002 7.48522 7.89345 8.45807 9.01073 9.20455 10.28613 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.036906 B = 0.004915 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.495876 B = 5695.148768 C = 6252.099290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.109 0.891 9 N -0.532 5.532 10 C 0.228 3.772 11 C -0.223 4.223 12 C 0.022 3.978 13 C -0.752 4.752 14 C 0.052 3.948 15 C -0.256 4.256 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.608 4.608 19 S 2.501 3.499 20 O -0.961 6.961 21 O -0.956 6.956 22 H 0.281 0.719 23 H 0.402 0.598 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -11.775 0.501 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.126 0.874 9 N -0.128 5.128 10 C 0.101 3.899 11 C -0.247 4.247 12 C 0.001 3.999 13 C -0.848 4.848 14 C 0.049 3.951 15 C -0.281 4.281 16 C -0.136 4.136 17 C -0.143 4.143 18 C -0.737 4.737 19 S 2.686 3.314 20 O -0.958 6.958 21 O -0.953 6.953 22 H 0.091 0.909 23 H 0.237 0.763 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.372 -11.332 0.345 11.420 hybrid contribution -1.031 1.122 0.230 1.541 sum 0.341 -10.210 0.574 10.232 Atomic orbital electron populations 1.69668 1.06216 1.29439 1.46152 1.25442 0.95811 1.00445 0.96291 0.85784 0.78913 0.79490 0.79500 1.19337 1.20458 1.19351 1.19874 0.93527 0.82534 1.47784 0.87387 1.41303 1.08577 1.02519 1.60407 1.17783 0.91850 0.85816 0.94486 1.20415 0.92674 0.97420 1.14200 1.20091 0.97634 0.90965 0.91242 1.28369 1.03971 1.15783 1.36689 1.18571 0.90985 0.93597 0.91950 1.20287 0.98056 0.90989 1.18728 1.20417 0.99001 0.91588 1.02625 1.21193 0.95230 0.98867 0.99037 1.30308 1.15478 1.17864 1.10078 1.04784 0.75588 0.76493 0.74567 1.93518 1.60374 1.85824 1.56097 1.93535 1.79250 1.86650 1.35856 0.90914 0.76258 0.86004 0.87262 0.87568 0.89932 0.89544 0.89561 0.89768 0.84784 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.16 13.05 55.49 0.72 -21.43 16 2 C 0.03 0.62 5.50 -17.45 -0.10 0.52 16 3 Si 0.94 18.83 29.55 -169.99 -5.02 13.81 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.31 -7.52 9.56 -15.11 -0.14 -7.66 16 8 H 0.11 2.54 5.70 -52.49 -0.30 2.24 16 9 N -0.53 -12.49 5.43 -9.72 -0.05 -12.54 16 10 C 0.23 5.01 6.60 -84.03 -0.55 4.45 16 11 C -0.22 -4.80 9.32 -39.44 -0.37 -5.17 16 12 C 0.02 0.45 9.47 -39.51 -0.37 0.08 16 13 C -0.75 -13.87 5.69 -39.54 -0.22 -14.10 16 14 C 0.05 0.90 5.76 -104.77 -0.60 0.30 16 15 C -0.26 -4.95 9.33 -39.08 -0.36 -5.31 16 16 C -0.10 -1.23 5.27 -28.80 -0.15 -1.38 16 17 C -0.11 -1.11 5.83 -27.01 -0.16 -1.26 16 18 C -0.61 -6.45 6.58 37.47 0.25 -6.21 16 19 S 2.50 39.42 5.22 -107.50 -0.56 38.86 16 20 O -0.96 -17.79 17.81 -57.51 -1.02 -18.81 16 21 O -0.96 -17.66 17.93 -57.51 -1.03 -18.69 16 22 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 23 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 24 H 0.12 2.56 5.99 -52.49 -0.31 2.25 16 25 H 0.11 2.01 8.05 -52.49 -0.42 1.59 16 26 H 0.11 1.86 8.01 -52.49 -0.42 1.44 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 0.96 7.99 -51.93 -0.42 0.55 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 31 H 0.13 1.22 8.09 -51.93 -0.42 0.80 16 32 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 281.69 15.07 4.25 4.25 Total: -1.00 -30.29 281.69 -8.95 -39.23 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.43 Total: 11.07 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -2.79 Total: -35.74 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.67 Total: -33.97 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -2.06 Total: -37.50 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 39.42 SS G_CDS: -0.56 Total: 38.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.29 -8.95 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258785598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.005 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds