Wall clock time and date at job start Mon Mar 30 2020 04:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86806 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47070 * 239.99922 * 3 2 1 5 5 H 1.48496 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46966 * 120.00485 * 3 2 1 7 7 C 1.38793 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99926 * 179.97438 * 7 2 1 9 9 N 1.36851 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.39294 * 120.00044 * 180.02562 * 9 7 2 11 11 C 1.39122 * 120.15098 * 0.02562 * 10 9 7 12 12 C 1.37723 * 119.31831 * 180.59203 * 11 10 9 13 13 C 1.38925 * 120.79851 * 359.63759 * 12 11 10 14 14 C 1.37662 * 120.37508 * 359.88245 * 13 12 11 15 15 C 1.38539 * 120.15029 * 180.02562 * 10 9 7 16 16 C 1.50026 * 124.68129 * 181.13697 * 14 13 12 17 17 C 1.51825 * 113.86448 * 335.77695 * 16 14 13 18 18 C 1.53610 * 109.06691 * 61.43032 * 17 16 14 19 19 S 1.76598 * 117.77501 * 179.28311 * 13 12 11 20 20 O 1.42102 * 104.39447 * 52.44562 * 19 13 12 21 21 O 1.42097 * 104.39870 * 284.25069 * 19 13 12 22 22 H 0.96993 * 120.00202 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99413 * 0.02562 * 9 7 2 24 24 H 1.08002 * 120.33623 * 0.30801 * 11 10 9 25 25 H 1.07999 * 119.59970 * 179.89478 * 12 11 10 26 26 H 1.08001 * 119.53728 * 359.64090 * 15 10 9 27 27 H 1.09004 * 108.60454 * 96.90888 * 16 14 13 28 28 H 1.08998 * 108.60381 * 214.63702 * 16 14 13 29 29 H 1.09001 * 109.53820 * 181.30637 * 17 16 14 30 30 H 1.08995 * 109.53457 * 301.47260 * 17 16 14 31 31 H 1.09004 * 109.94554 * 47.88534 * 18 17 16 32 32 H 1.09001 * 109.94280 * 169.04336 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2849 2.7465 0.0006 6 1 3.1037 1.6964 1.2124 7 6 2.0100 -1.2019 -0.0005 8 1 3.0900 -1.2019 -0.0010 9 7 1.3258 -2.3872 -0.0005 10 6 2.0223 -3.5934 -0.0005 11 6 3.4135 -3.5970 0.0000 12 6 4.0848 -4.7995 -0.0124 13 6 3.3896 -6.0023 -0.0179 14 6 2.0130 -6.0106 -0.0084 15 6 1.3328 -4.7951 -0.0011 16 6 1.1670 -7.2494 0.0113 17 6 1.8623 -8.4772 -0.5492 18 6 3.1009 -8.7863 0.3053 19 16 4.3303 -7.4964 -0.0534 20 8 5.2457 -7.3633 1.0253 21 8 4.7839 -7.5965 -1.3963 22 1 -0.4850 0.8400 0.0004 23 1 0.3558 -2.3871 -0.0005 24 1 3.9614 -2.6663 0.0054 25 1 5.1648 -4.8076 -0.0138 26 1 0.2529 -4.7893 0.0044 27 1 0.8752 -7.4549 1.0413 28 1 0.2650 -7.0639 -0.5719 29 1 1.1798 -9.3267 -0.5226 30 1 2.1664 -8.2859 -1.5782 31 1 2.8377 -8.7653 1.3629 32 1 3.4998 -9.7657 0.0411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258785598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:54 Heat of formation + Delta-G solvation = -74.835222 kcal Electronic energy + Delta-G solvation = -17939.306819 eV Core-core repulsion = 14990.444723 eV Total energy + Delta-G solvation = -2948.862096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40579 -37.96684 -37.62035 -36.82341 -35.82455 -33.82262 -31.87191 -30.05859 -28.01794 -26.66276 -23.94476 -23.39894 -21.49196 -19.88285 -19.44846 -18.32181 -17.88171 -17.32479 -16.72230 -16.43517 -16.08216 -15.59073 -15.32684 -14.79670 -14.47264 -14.38965 -14.09225 -13.91150 -13.43349 -13.29009 -13.06791 -12.96681 -12.88216 -12.55370 -12.37589 -12.27558 -12.15159 -11.85729 -11.77216 -11.44644 -10.95943 -10.76141 -9.53744 -8.85825 -8.61926 -5.87680 -0.56978 0.44169 0.69347 1.37984 1.43811 1.48262 2.17179 2.20251 2.66281 2.94710 3.19153 3.24907 3.44999 3.75148 3.91780 4.01336 4.11599 4.42504 4.50195 4.57567 4.69033 4.72596 4.94575 5.07395 5.08045 5.19358 5.22084 5.30832 5.45375 5.54951 5.68004 5.79012 6.30989 6.68299 7.30109 7.45828 8.54843 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.036906 B = 0.004915 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.495876 B = 5695.148768 C = 6252.099290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.330 4.330 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.219 3.781 11 C -0.250 4.250 12 C 0.005 3.995 13 C -0.757 4.757 14 C 0.061 3.939 15 C -0.270 4.270 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.569 4.569 19 S 2.499 3.501 20 O -0.995 6.995 21 O -0.989 6.989 22 H 0.280 0.720 23 H 0.397 0.603 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -15.679 0.860 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.460 4.460 8 H 0.122 0.878 9 N -0.161 5.161 10 C 0.096 3.904 11 C -0.274 4.274 12 C -0.016 4.016 13 C -0.849 4.849 14 C 0.058 3.942 15 C -0.295 4.295 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.703 4.703 19 S 2.686 3.314 20 O -0.992 6.992 21 O -0.986 6.986 22 H 0.089 0.911 23 H 0.231 0.769 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.142 0.858 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.864 -15.210 0.692 15.251 hybrid contribution -0.743 1.835 0.122 1.984 sum 0.121 -13.375 0.813 13.400 Atomic orbital electron populations 1.69753 1.07283 1.29789 1.48830 1.26201 0.96559 1.03002 0.96265 0.84879 0.77680 0.75949 0.79355 1.19144 1.20048 1.19085 1.20043 0.93572 0.83566 1.48821 0.87838 1.41192 1.08078 1.02597 1.64253 1.18249 0.92198 0.86625 0.93326 1.20555 0.93073 0.97955 1.15794 1.20427 0.98481 0.91563 0.91105 1.29180 1.05300 1.17180 1.33278 1.19282 0.90864 0.95414 0.88647 1.20712 0.99257 0.90914 1.18637 1.20629 0.98662 0.89801 1.05093 1.21377 0.95599 0.99420 0.98306 1.30086 1.12335 1.15718 1.12178 1.04956 0.76313 0.76847 0.73309 1.93477 1.62518 1.86654 1.56542 1.93494 1.80605 1.87117 1.37426 0.91080 0.76871 0.86867 0.86488 0.85762 0.86950 0.87726 0.84671 0.90370 0.81829 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.05 21.65 0.28 -48.29 16 2 C -0.02 -1.00 5.50 84.86 0.47 -0.53 16 3 Si 1.00 40.26 29.55 68.60 2.03 42.29 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.33 -17.16 9.56 84.04 0.80 -16.36 16 8 H 0.10 5.24 5.70 -2.91 -0.02 5.22 16 9 N -0.56 -27.85 5.43 -184.67 -1.00 -28.85 16 10 C 0.22 9.98 6.60 38.24 0.25 10.23 16 11 C -0.25 -11.30 9.32 22.36 0.21 -11.09 16 12 C 0.01 0.21 9.47 22.31 0.21 0.42 16 13 C -0.76 -26.90 5.69 22.30 0.13 -26.78 16 14 C 0.06 1.95 5.76 -19.96 -0.11 1.83 16 15 C -0.27 -10.30 9.33 22.60 0.21 -10.09 16 16 C -0.11 -2.02 5.27 29.25 0.15 -1.86 16 17 C -0.11 -1.53 5.83 30.41 0.18 -1.35 16 18 C -0.57 -8.17 6.58 72.19 0.47 -7.70 16 19 S 2.50 72.00 5.22 -56.49 -0.29 71.71 16 20 O -0.99 -35.19 17.81 -127.68 -2.27 -37.46 16 21 O -0.99 -34.87 17.93 -127.68 -2.29 -37.16 16 22 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 23 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 24 H 0.11 5.16 5.99 -2.91 -0.02 5.15 16 25 H 0.12 4.48 8.05 -2.91 -0.02 4.46 16 26 H 0.12 4.22 8.01 -2.91 -0.02 4.19 16 27 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.10 1.74 7.99 -2.39 -0.02 1.72 16 29 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.28 8.02 -2.39 -0.02 1.26 16 31 H 0.16 1.65 8.09 -2.38 -0.02 1.63 16 32 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -70.95 281.69 -0.16 -71.11 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.42 Total: 29.93 kcal Atomic # 6 Polarization: -66.24 SS G_CDS: 2.97 Total: -63.27 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -0.72 Total: -77.14 kcal Atomic # 8 Polarization: -70.06 SS G_CDS: -4.56 Total: -74.62 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 72.00 SS G_CDS: -0.29 Total: 71.71 kcal Total: -70.95 -0.16 -71.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258785598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.728 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds