Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29901 * 124.85824 * 2 1 4 4 C 1.36062 * 108.80044 * 179.97438 * 3 2 1 5 5 C 1.39586 * 133.80177 * 180.02562 * 4 3 2 6 6 C 1.37683 * 119.73303 * 179.97438 * 5 4 3 7 7 S 1.76196 * 119.79488 * 179.97438 * 6 5 4 8 8 O 1.42103 * 106.39862 * 336.46326 * 7 6 5 9 9 O 1.42095 * 106.40437 * 203.54157 * 7 6 5 10 10 C 1.76199 * 107.21610 * 89.99910 * 7 6 5 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99836 * 179.72181 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28505 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27572 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38722 * 120.41362 * 0.26188 * 6 5 4 19 19 C 1.37908 * 120.47856 * 359.50093 * 18 6 5 20 20 C 1.38670 * 119.87515 * 0.47381 * 19 18 6 21 21 O 1.34233 * 124.85447 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47243 * 300.01957 * 1 2 3 24 24 H 1.08998 * 109.46697 * 60.01812 * 1 2 3 25 25 H 1.08001 * 120.13997 * 0.02562 * 5 4 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 27 27 H 1.08009 * 119.75973 * 179.74505 * 18 6 5 28 28 H 1.08002 * 120.06149 * 180.26014 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2495 1.0659 0.0000 4 6 3.5570 0.6896 0.0006 5 6 4.7641 1.3905 0.0013 6 6 5.9550 0.6994 0.0023 7 16 7.4797 1.5825 0.0025 8 8 7.2007 2.8647 -0.5428 9 8 8.4535 0.7019 -0.5409 10 6 7.9301 1.8449 1.6856 11 1 7.2952 1.4774 2.4782 12 6 9.0964 2.5140 1.9909 13 7 9.8698 2.9612 1.0257 14 14 9.5778 2.7854 3.7752 15 1 10.4029 1.6434 4.2445 16 1 10.3605 4.0421 3.8910 17 1 8.3530 2.8866 4.6086 18 6 5.9619 -0.6878 -0.0029 19 6 4.7770 -1.3933 0.0013 20 6 3.5683 -0.7134 0.0007 21 8 2.2742 -1.1015 0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5141 0.8898 24 1 -0.3633 0.5136 -0.8902 25 1 4.7641 2.4705 0.0019 26 1 10.6902 3.4322 1.2404 27 1 6.9022 -1.2192 -0.0062 28 1 4.7903 -2.4732 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259156914.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -51.461058 kcal Electronic energy + Delta-G solvation = -17549.368809 eV Core-core repulsion = 14465.687198 eV Total energy + Delta-G solvation = -3083.681611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.040 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.22125 -37.84589 -35.34209 -34.82015 -34.04756 -33.15111 -31.69795 -30.59607 -28.04395 -26.20084 -23.42670 -22.37790 -21.53030 -19.11704 -18.13879 -17.31151 -16.86618 -16.59666 -16.07879 -15.12486 -14.35192 -14.04472 -14.02111 -13.99786 -13.47471 -13.39169 -12.94521 -12.75823 -12.43526 -12.02225 -11.59003 -11.30144 -11.24604 -11.21063 -10.62468 -10.49209 -10.35904 -10.24731 -9.83827 -9.29718 -9.01567 -8.74758 -8.34053 -6.77065 -5.40409 0.79850 1.04892 2.01371 2.42322 2.44830 3.05306 3.12140 3.19061 3.62132 3.76278 4.03967 4.55773 4.58551 4.84797 5.01233 5.10427 5.24789 5.28703 5.36408 5.38759 5.48770 5.76076 5.78650 6.11692 6.14901 6.29292 6.33583 6.68563 6.85458 7.25215 7.61646 7.88590 8.81015 10.17856 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.005523 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.236807 B = 5068.194923 C = 5275.127069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.231 3.769 3 N -0.469 5.469 4 C -0.005 4.005 5 C 0.042 3.958 6 C -0.644 4.644 7 S 2.606 3.394 8 O -0.979 6.979 9 O -0.979 6.979 10 C -1.000 5.000 11 H 0.106 0.894 12 C 0.132 3.868 13 N -0.841 5.841 14 Si 0.924 3.076 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.261 1.261 18 C -0.004 4.004 19 C -0.120 4.120 20 C 0.039 3.961 21 O -0.218 6.218 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.155 0.845 26 H 0.293 0.707 27 H 0.160 0.840 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -7.237 0.536 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.019 3.981 3 N -0.199 5.199 4 C -0.117 4.117 5 C 0.023 3.977 6 C -0.725 4.725 7 S 2.786 3.214 8 O -0.976 6.976 9 O -0.976 6.976 10 C -1.134 5.134 11 H 0.124 0.876 12 C -0.086 4.086 13 N -0.470 5.470 14 Si 0.748 3.252 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.185 1.185 18 C -0.023 4.023 19 C -0.140 4.140 20 C -0.011 4.011 21 O -0.110 6.110 22 H 0.109 0.891 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.173 0.827 26 H 0.103 0.897 27 H 0.177 0.823 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.297 -6.319 -0.316 14.726 hybrid contribution -0.077 -0.881 1.490 1.733 sum -13.374 -7.201 1.174 15.234 Atomic orbital electron populations 1.20353 0.80904 1.04942 1.05424 1.26439 0.96595 0.78374 0.96722 1.70560 1.00987 1.29002 1.19325 1.19896 0.92025 0.91567 1.08188 1.20207 0.87307 1.00932 0.89227 1.31781 1.21564 1.06349 1.12772 1.01169 0.70358 0.72481 0.77416 1.93355 1.84212 1.39192 1.80845 1.93347 1.55931 1.67414 1.80911 1.30087 1.16971 1.50799 1.15553 0.87595 1.24771 0.93257 0.90024 1.00536 1.69895 1.12670 1.30574 1.33885 0.86094 0.79286 0.78553 0.81284 1.19041 1.19827 1.18541 1.20909 0.98059 0.92300 0.91010 1.19936 0.87150 1.00277 1.06605 1.20469 0.83635 0.94690 1.02350 1.84469 1.15410 1.36322 1.74771 0.89135 0.88102 0.88110 0.82741 0.89666 0.82291 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.05 15 2 C 0.23 3.15 8.24 -13.09 -0.11 3.04 15 3 N -0.47 -8.08 11.34 -8.70 -0.10 -8.18 15 4 C -0.01 -0.10 7.24 -84.71 -0.61 -0.72 15 5 C 0.04 0.86 9.56 -39.28 -0.38 0.49 15 6 C -0.64 -13.60 5.81 -39.61 -0.23 -13.83 15 7 S 2.61 67.32 4.65 -107.50 -0.50 66.82 15 8 O -0.98 -27.67 17.14 -57.17 -0.98 -28.65 15 9 O -0.98 -27.08 17.13 -57.17 -0.98 -28.06 15 10 C -1.00 -26.69 9.58 30.60 0.29 -26.40 15 11 H 0.11 2.59 7.81 -52.49 -0.41 2.18 15 12 C 0.13 3.58 5.46 -17.82 -0.10 3.48 15 13 N -0.84 -23.92 13.19 55.43 0.73 -23.19 15 14 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 15 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 18 C 0.00 -0.08 9.50 -39.52 -0.38 -0.45 15 19 C -0.12 -1.91 10.06 -39.54 -0.40 -2.31 15 20 C 0.04 0.67 7.43 -38.65 -0.29 0.39 15 21 O -0.22 -3.28 10.77 3.62 0.04 -3.24 15 22 H 0.09 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.10 0.59 8.14 -51.93 -0.42 0.16 15 25 H 0.15 3.08 7.60 -52.49 -0.40 2.68 15 26 H 0.29 7.45 8.31 -40.82 -0.34 7.11 15 27 H 0.16 2.62 7.59 -52.48 -0.40 2.22 15 28 H 0.14 1.69 8.06 -52.49 -0.42 1.26 15 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -34.88 272.25 -6.55 -41.43 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -2.03 Total: 0.32 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: -1.81 Total: -36.35 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.63 Total: -31.37 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -1.92 Total: -59.95 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 67.32 SS G_CDS: -0.50 Total: 66.82 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.88 -6.55 -41.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259156914.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.034 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds