Wall clock time and date at job start Mon Mar 30 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29901 * 124.85824 * 2 1 4 4 C 1.36062 * 108.80044 * 179.97438 * 3 2 1 5 5 C 1.39586 * 133.80177 * 180.02562 * 4 3 2 6 6 C 1.37683 * 119.73303 * 179.97438 * 5 4 3 7 7 S 1.76196 * 119.79488 * 179.97438 * 6 5 4 8 8 O 1.42103 * 106.39862 * 336.46326 * 7 6 5 9 9 O 1.42095 * 106.40437 * 203.54157 * 7 6 5 10 10 C 1.76199 * 107.21610 * 89.99910 * 7 6 5 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99836 * 179.72181 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28505 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27572 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38722 * 120.41362 * 0.26188 * 6 5 4 19 19 C 1.37908 * 120.47856 * 359.50093 * 18 6 5 20 20 C 1.38670 * 119.87515 * 0.47381 * 19 18 6 21 21 O 1.34233 * 124.85447 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47243 * 300.01957 * 1 2 3 24 24 H 1.08998 * 109.46697 * 60.01812 * 1 2 3 25 25 H 1.08001 * 120.13997 * 0.02562 * 5 4 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 27 27 H 1.08009 * 119.75973 * 179.74505 * 18 6 5 28 28 H 1.08002 * 120.06149 * 180.26014 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2495 1.0659 0.0000 4 6 3.5570 0.6896 0.0006 5 6 4.7641 1.3905 0.0013 6 6 5.9550 0.6994 0.0023 7 16 7.4797 1.5825 0.0025 8 8 7.2007 2.8647 -0.5428 9 8 8.4535 0.7019 -0.5409 10 6 7.9301 1.8449 1.6856 11 1 7.2952 1.4774 2.4782 12 6 9.0964 2.5140 1.9909 13 7 9.8698 2.9612 1.0257 14 14 9.5778 2.7854 3.7752 15 1 10.4029 1.6434 4.2445 16 1 10.3605 4.0421 3.8910 17 1 8.3530 2.8866 4.6086 18 6 5.9619 -0.6878 -0.0029 19 6 4.7770 -1.3933 0.0013 20 6 3.5683 -0.7134 0.0007 21 8 2.2742 -1.1015 0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5141 0.8898 24 1 -0.3633 0.5136 -0.8902 25 1 4.7641 2.4705 0.0019 26 1 10.6902 3.4322 1.2404 27 1 6.9022 -1.2192 -0.0062 28 1 4.7903 -2.4732 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259156914.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:09 Heat of formation + Delta-G solvation = -80.373888 kcal Electronic energy + Delta-G solvation = -17550.622564 eV Core-core repulsion = 14465.687198 eV Total energy + Delta-G solvation = -3084.935366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.040 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.47302 -39.25119 -37.44610 -36.16944 -36.06767 -35.19962 -32.71058 -32.01606 -29.18406 -28.28147 -24.84244 -23.68692 -22.72679 -20.98550 -19.82711 -18.70657 -18.53034 -18.07126 -17.62928 -16.99368 -16.04997 -15.87321 -15.54198 -15.28086 -14.87030 -14.26489 -14.20331 -14.00271 -13.74151 -13.53422 -13.29402 -12.99755 -12.91260 -12.51323 -12.46107 -12.41058 -12.28853 -11.85887 -11.58019 -11.24414 -10.93171 -10.31248 -9.68027 -8.78073 -7.52298 -0.52195 -0.43159 0.07045 1.20214 1.26932 1.36346 1.36866 1.53380 2.15584 2.24981 2.56146 2.67929 3.22554 3.34284 3.73205 3.73472 3.81788 3.96876 4.02758 4.37959 4.53843 4.62347 4.64797 4.68620 4.85226 4.91534 5.04165 5.20359 5.24795 5.32724 5.85528 6.38779 6.74511 8.19912 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.005523 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.236807 B = 5068.194923 C = 5275.127069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.257 3.743 3 N -0.512 5.512 4 C -0.019 4.019 5 C 0.018 3.982 6 C -0.647 4.647 7 S 2.603 3.397 8 O -1.021 7.021 9 O -1.010 7.010 10 C -1.021 5.021 11 H 0.121 0.879 12 C 0.072 3.928 13 N -0.888 5.888 14 Si 0.993 3.007 15 H -0.249 1.249 16 H -0.261 1.261 17 H -0.251 1.251 18 C -0.021 4.021 19 C -0.093 4.093 20 C 0.033 3.967 21 O -0.209 6.209 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.142 0.858 26 H 0.302 0.698 27 H 0.172 0.828 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 -9.277 2.024 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.045 3.955 3 N -0.242 5.242 4 C -0.130 4.130 5 C -0.001 4.001 6 C -0.733 4.733 7 S 2.790 3.210 8 O -1.018 7.018 9 O -1.007 7.007 10 C -1.154 5.154 11 H 0.140 0.860 12 C -0.141 4.141 13 N -0.519 5.519 14 Si 0.810 3.190 15 H -0.173 1.173 16 H -0.185 1.185 17 H -0.174 1.174 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.018 4.018 21 O -0.102 6.102 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.159 0.841 26 H 0.112 0.888 27 H 0.189 0.811 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.654 -8.329 1.152 17.769 hybrid contribution 0.385 -0.332 0.967 1.092 sum -15.270 -8.661 2.119 17.682 Atomic orbital electron populations 1.20841 0.76103 1.07577 1.07155 1.27860 0.98507 0.77054 0.92029 1.70604 1.00428 1.30701 1.22451 1.19971 0.92358 0.92636 1.07990 1.20083 0.88206 1.00560 0.91298 1.30916 1.19056 1.07529 1.15848 1.00596 0.71258 0.71938 0.77232 1.93293 1.85304 1.41627 1.81552 1.93292 1.58328 1.67671 1.81415 1.30447 1.17641 1.51056 1.16298 0.86049 1.26035 0.93025 0.89277 1.05813 1.69984 1.13623 1.31712 1.36567 0.85097 0.79604 0.79454 0.74848 1.17322 1.18481 1.17407 1.21108 0.99866 0.90993 0.92036 1.20310 0.85522 1.02291 1.03046 1.20688 0.84974 0.93982 1.02126 1.84528 1.14393 1.36676 1.74580 0.86062 0.86162 0.86153 0.84066 0.88814 0.81054 0.79562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 71.24 0.75 0.16 15 2 C 0.26 6.19 8.24 88.39 0.73 6.92 15 3 N -0.51 -17.01 11.34 -296.28 -3.36 -20.36 15 4 C -0.02 -0.71 7.24 39.31 0.28 -0.42 15 5 C 0.02 0.77 9.56 22.46 0.21 0.98 15 6 C -0.65 -28.17 5.81 22.25 0.13 -28.04 15 7 S 2.60 141.21 4.65 -56.49 -0.26 140.94 15 8 O -1.02 -61.48 17.14 -128.00 -2.19 -63.67 15 9 O -1.01 -58.48 17.13 -128.00 -2.19 -60.67 15 10 C -1.02 -55.97 9.58 67.74 0.65 -55.32 15 11 H 0.12 6.02 7.81 -2.91 -0.02 6.00 15 12 C 0.07 3.94 5.46 84.66 0.46 4.41 15 13 N -0.89 -52.15 13.19 21.45 0.28 -51.87 15 14 Si 0.99 40.65 29.54 68.60 2.03 42.68 15 15 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 16 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 17 H -0.25 -9.73 7.11 99.48 0.71 -9.02 15 18 C -0.02 -0.76 9.50 22.31 0.21 -0.55 15 19 C -0.09 -2.69 10.06 22.29 0.22 -2.47 15 20 C 0.03 1.08 7.43 22.88 0.17 1.25 15 21 O -0.21 -5.56 10.77 -9.97 -0.11 -5.67 15 22 H 0.12 0.52 8.14 -2.39 -0.02 0.50 15 23 H 0.12 0.85 8.14 -2.39 -0.02 0.83 15 24 H 0.12 0.84 8.14 -2.39 -0.02 0.82 15 25 H 0.14 6.12 7.60 -2.91 -0.02 6.10 15 26 H 0.30 15.79 8.31 -92.70 -0.77 15.02 15 27 H 0.17 5.57 7.59 -2.91 -0.02 5.55 15 28 H 0.19 3.60 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -79.65 272.25 -0.78 -80.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.20 Total: 11.27 kcal Atomic # 6 Polarization: -76.90 SS G_CDS: 3.82 Total: -73.08 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -3.08 Total: -72.23 kcal Atomic # 8 Polarization: -125.52 SS G_CDS: -4.49 Total: -130.01 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 141.21 SS G_CDS: -0.26 Total: 140.94 kcal Total: -79.65 -0.78 -80.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259156914.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.059 kcal (2) G-P(sol) polarization free energy of solvation -79.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds