Wall clock time and date at job start Mon Mar 30 2020 04:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99775 * 2 1 4 4 H 1.48505 * 109.47104 * 269.99532 * 3 2 1 5 5 H 1.48499 * 109.47604 * 29.99552 * 3 2 1 6 6 H 1.48502 * 109.47229 * 149.99966 * 3 2 1 7 7 C 1.37872 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46620 * 85.12232 * 9 7 2 11 11 C 1.53248 * 109.46655 * 325.13246 * 9 7 2 12 12 S 1.81743 * 108.91083 * 182.26973 * 11 9 7 13 13 C 1.82109 * 102.16331 * 54.49297 * 12 11 9 14 14 C 1.53236 * 108.85745 * 305.53266 * 13 12 11 15 15 N 1.46377 * 109.49158 * 57.64425 * 14 13 12 16 16 C 1.34775 * 119.65242 * 114.88998 * 15 14 13 17 17 O 1.21692 * 120.00045 * 203.42952 * 16 15 14 18 18 C 1.46658 * 119.99815 * 23.42175 * 16 15 14 19 19 C 1.36540 * 125.98872 * 187.03052 * 18 16 15 20 20 C 1.40363 * 106.70639 * 179.90892 * 19 18 16 21 21 C 1.35130 * 107.11698 * 0.36230 * 20 19 18 22 22 O 1.33932 * 108.76683 * 359.77298 * 21 20 19 23 23 H 0.97002 * 120.00364 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.58286 * 302.13199 * 11 9 7 25 25 H 1.09005 * 109.58135 * 62.40465 * 11 9 7 26 26 H 1.08992 * 109.56696 * 185.71065 * 13 12 11 27 27 H 1.09000 * 109.65508 * 65.40591 * 13 12 11 28 28 H 1.09001 * 109.46965 * 297.63629 * 14 13 12 29 29 H 1.09004 * 109.46805 * 177.64791 * 14 13 12 30 30 H 1.08004 * 126.64547 * 0.04780 * 19 18 16 31 31 H 1.08003 * 126.44287 * 180.11177 * 20 19 18 32 32 H 1.07997 * 125.61246 * 179.78094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.9943 -2.7702 -1.0235 11 6 -0.0312 -2.3485 0.8260 12 16 -0.8932 -3.9478 0.8721 13 6 0.4012 -5.0635 1.5014 14 6 1.6397 -4.9392 0.6077 15 7 2.0892 -3.5463 0.5869 16 6 3.2873 -3.2243 1.1136 17 8 3.4995 -2.0877 1.4929 18 6 4.3351 -4.2439 1.2297 19 6 5.5361 -4.0918 1.8610 20 6 6.2184 -5.3114 1.7295 21 6 5.4174 -6.1413 1.0255 22 8 4.2835 -5.4945 0.7261 23 1 -0.4851 0.8400 -0.0004 24 1 0.2215 -2.0404 1.8405 25 1 -0.6757 -1.5992 0.3664 26 1 0.0385 -6.0911 1.4822 27 1 0.6590 -4.7862 2.5236 28 1 1.3900 -5.2555 -0.4051 29 1 2.4358 -5.5720 1.0000 30 1 5.8913 -3.2056 2.3659 31 1 7.2008 -5.5417 2.1147 32 1 5.6529 -7.1586 0.7498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766347.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:27 Heat of formation + Delta-G solvation = 20.242263 kcal Electronic energy + Delta-G solvation = -18782.075408 eV Core-core repulsion = 15837.336180 eV Total energy + Delta-G solvation = -2944.739227 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48081 -39.10827 -35.74975 -33.63081 -32.85402 -30.36187 -30.03155 -28.36380 -25.51725 -23.44225 -22.73601 -21.57557 -20.85527 -19.37775 -17.72357 -16.62226 -16.28919 -15.62114 -15.55728 -14.82577 -14.58242 -14.17402 -13.64029 -13.28681 -13.04787 -12.92224 -12.72476 -12.60178 -12.38229 -11.97795 -11.71884 -11.09169 -10.93682 -10.66358 -10.48540 -10.02944 -9.89671 -9.67452 -9.21450 -8.71868 -8.52982 -8.30872 -7.76389 -6.81374 -6.01813 -4.17233 1.40468 2.54312 2.62948 2.97160 3.27828 3.35076 3.45638 3.60911 3.74133 3.85469 4.38838 4.86285 5.04862 5.14306 5.18735 5.35684 5.47408 5.66871 5.79702 5.89018 5.93616 6.14817 6.25057 6.49743 6.57784 6.62168 6.99901 7.15480 7.49963 7.60492 7.72265 8.19857 8.38586 8.84997 8.87104 9.48038 10.85010 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.009009 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.964372 B = 3107.360029 C = 4531.656557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.917 3.083 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.268 3.732 10 H 0.046 0.954 11 C -0.066 4.066 12 S -0.347 6.347 13 C -0.092 4.092 14 C 0.108 3.892 15 N -0.610 5.610 16 C 0.584 3.416 17 O -0.463 6.463 18 C -0.057 4.057 19 C -0.147 4.147 20 C -0.222 4.222 21 C -0.034 4.034 22 O -0.160 6.160 23 H 0.266 0.734 24 H 0.059 0.941 25 H 0.188 0.812 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -11.483 1.959 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.142 4.142 3 Si 0.745 3.255 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.531 4.531 8 H 0.109 0.891 9 C 0.166 3.834 10 H 0.064 0.936 11 C -0.214 4.214 12 S -0.121 6.121 13 C -0.241 4.241 14 C -0.017 4.017 15 N -0.344 5.344 16 C 0.369 3.631 17 O -0.336 6.336 18 C -0.110 4.110 19 C -0.167 4.167 20 C -0.242 4.242 21 C -0.104 4.104 22 O -0.056 6.056 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.203 0.797 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.440 -11.042 1.719 12.429 hybrid contribution 1.848 0.771 0.610 2.093 sum 7.288 -10.271 2.329 12.807 Atomic orbital electron populations 1.69053 1.05921 1.26208 1.53082 1.24887 0.94880 0.99964 0.94456 0.86147 0.79898 0.81496 0.77990 1.20682 1.21154 1.19430 1.21811 0.94751 0.88659 1.47858 0.89084 1.19237 0.86926 0.85565 0.91632 0.93619 1.25428 1.02358 0.89617 1.04006 1.86758 1.25811 1.12516 1.87002 1.23667 0.97489 1.01426 1.01547 1.21760 0.95932 0.83946 1.00105 1.48201 1.18377 1.08394 1.59467 1.16777 0.81023 0.85347 0.79933 1.90924 1.81209 1.18263 1.43201 1.23280 0.99398 0.84375 1.03945 1.21926 0.93327 0.99500 1.01958 1.21767 1.02249 0.94276 1.05869 1.24335 0.85588 0.98964 1.01471 1.84253 1.36668 1.23417 1.61240 0.92249 0.92201 0.79669 0.88415 0.90781 0.90823 0.89215 0.82666 0.83236 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 9.77 55.43 0.54 -23.79 16 2 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 3 Si 0.92 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.49 -13.36 7.01 -34.44 -0.24 -13.60 16 8 H 0.09 2.59 5.32 -52.60 -0.28 2.31 16 9 C 0.27 6.61 3.11 -69.02 -0.21 6.40 16 10 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.07 -1.63 5.01 37.29 0.19 -1.44 16 12 S -0.35 -7.23 22.33 -107.50 -2.40 -9.63 16 13 C -0.09 -1.58 6.68 37.28 0.25 -1.33 16 14 C 0.11 1.88 5.84 -3.99 -0.02 1.86 16 15 N -0.61 -13.17 2.79 -168.86 -0.47 -13.64 16 16 C 0.58 12.82 6.95 -12.86 -0.09 12.73 16 17 O -0.46 -11.74 13.36 5.20 0.07 -11.67 16 18 C -0.06 -1.02 6.62 -36.80 -0.24 -1.27 16 19 C -0.15 -2.30 10.63 -39.40 -0.42 -2.72 16 20 C -0.22 -2.70 10.87 -39.89 -0.43 -3.14 16 21 C -0.03 -0.39 12.08 29.63 0.36 -0.03 16 22 O -0.16 -2.41 7.75 4.98 0.04 -2.37 16 23 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 24 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 25 H 0.19 4.96 5.00 -54.53 -0.27 4.68 16 26 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.40 4.70 -51.93 -0.24 1.15 16 30 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 31 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -29.45 275.14 -7.38 -36.82 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.31 Total: 4.46 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.97 Total: -1.10 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.07 Total: -37.43 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.11 Total: -14.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -2.40 Total: -9.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.45 -7.38 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766347.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.066 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds