Wall clock time and date at job start Mon Mar 30 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99775 * 2 1 4 4 H 1.48505 * 109.47104 * 269.99532 * 3 2 1 5 5 H 1.48499 * 109.47604 * 29.99552 * 3 2 1 6 6 H 1.48502 * 109.47229 * 149.99966 * 3 2 1 7 7 C 1.37872 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46620 * 85.12232 * 9 7 2 11 11 C 1.53248 * 109.46655 * 325.13246 * 9 7 2 12 12 S 1.81743 * 108.91083 * 182.26973 * 11 9 7 13 13 C 1.82109 * 102.16331 * 54.49297 * 12 11 9 14 14 C 1.53236 * 108.85745 * 305.53266 * 13 12 11 15 15 N 1.46377 * 109.49158 * 57.64425 * 14 13 12 16 16 C 1.34775 * 119.65242 * 114.88998 * 15 14 13 17 17 O 1.21692 * 120.00045 * 203.42952 * 16 15 14 18 18 C 1.46658 * 119.99815 * 23.42175 * 16 15 14 19 19 C 1.36540 * 125.98872 * 187.03052 * 18 16 15 20 20 C 1.40363 * 106.70639 * 179.90892 * 19 18 16 21 21 C 1.35130 * 107.11698 * 0.36230 * 20 19 18 22 22 O 1.33932 * 108.76683 * 359.77298 * 21 20 19 23 23 H 0.97002 * 120.00364 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.58286 * 302.13199 * 11 9 7 25 25 H 1.09005 * 109.58135 * 62.40465 * 11 9 7 26 26 H 1.08992 * 109.56696 * 185.71065 * 13 12 11 27 27 H 1.09000 * 109.65508 * 65.40591 * 13 12 11 28 28 H 1.09001 * 109.46965 * 297.63629 * 14 13 12 29 29 H 1.09004 * 109.46805 * 177.64791 * 14 13 12 30 30 H 1.08004 * 126.64547 * 0.04780 * 19 18 16 31 31 H 1.08003 * 126.44287 * 180.11177 * 20 19 18 32 32 H 1.07997 * 125.61246 * 179.78094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.9943 -2.7702 -1.0235 11 6 -0.0312 -2.3485 0.8260 12 16 -0.8932 -3.9478 0.8721 13 6 0.4012 -5.0635 1.5014 14 6 1.6397 -4.9392 0.6077 15 7 2.0892 -3.5463 0.5869 16 6 3.2873 -3.2243 1.1136 17 8 3.4995 -2.0877 1.4929 18 6 4.3351 -4.2439 1.2297 19 6 5.5361 -4.0918 1.8610 20 6 6.2184 -5.3114 1.7295 21 6 5.4174 -6.1413 1.0255 22 8 4.2835 -5.4945 0.7261 23 1 -0.4851 0.8400 -0.0004 24 1 0.2215 -2.0404 1.8405 25 1 -0.6757 -1.5992 0.3664 26 1 0.0385 -6.0911 1.4822 27 1 0.6590 -4.7862 2.5236 28 1 1.3900 -5.2555 -0.4051 29 1 2.4358 -5.5720 1.0000 30 1 5.8913 -3.2056 2.3659 31 1 7.2008 -5.5417 2.1147 32 1 5.6529 -7.1586 0.7498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766347.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:26 Heat of formation + Delta-G solvation = 1.815106 kcal Electronic energy + Delta-G solvation = -18782.874469 eV Core-core repulsion = 15837.336180 eV Total energy + Delta-G solvation = -2945.538289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.62028 -40.78175 -37.45845 -35.52323 -33.98221 -32.11322 -31.44275 -29.88519 -27.53673 -24.91859 -24.29898 -22.66497 -22.41707 -20.83621 -19.38839 -18.12785 -17.74489 -17.13659 -17.00911 -16.54928 -16.34661 -15.82590 -15.25898 -14.91485 -14.64936 -14.32236 -14.28095 -13.87684 -13.73476 -13.50051 -13.23804 -12.91922 -12.80975 -12.49432 -12.38050 -11.89004 -11.52181 -11.03915 -10.97209 -10.58265 -10.35301 -9.61464 -9.46565 -8.53216 -8.03697 -6.26379 0.14841 1.03333 1.35936 1.39224 1.50636 1.52866 1.71949 1.83096 2.20481 2.32048 2.47526 3.11259 3.65676 3.90483 4.01118 4.08284 4.19080 4.34488 4.53370 4.55516 4.64834 4.72893 4.81641 4.95853 5.03847 5.20270 5.45897 5.57274 5.59469 5.84496 5.98510 6.18852 6.64996 6.78887 7.20320 7.42703 8.80083 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.009009 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.964372 B = 3107.360029 C = 4531.656557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.272 3.728 10 H 0.030 0.970 11 C -0.059 4.059 12 S -0.345 6.345 13 C -0.082 4.082 14 C 0.107 3.893 15 N -0.618 5.618 16 C 0.580 3.420 17 O -0.518 6.518 18 C -0.101 4.101 19 C -0.139 4.139 20 C -0.229 4.229 21 C 0.001 3.999 22 O -0.166 6.166 23 H 0.267 0.733 24 H 0.026 0.974 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.185 0.815 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -14.644 2.048 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.092 0.908 9 C 0.169 3.831 10 H 0.048 0.952 11 C -0.207 4.207 12 S -0.118 6.118 13 C -0.230 4.230 14 C -0.017 4.017 15 N -0.351 5.351 16 C 0.369 3.631 17 O -0.396 6.396 18 C -0.153 4.153 19 C -0.160 4.160 20 C -0.247 4.247 21 C -0.068 4.068 22 O -0.062 6.062 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.181 0.819 26 H 0.160 0.840 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 6.974 -14.242 1.798 15.959 hybrid contribution 1.488 1.512 0.625 2.212 sum 8.461 -12.729 2.423 15.476 Atomic orbital electron populations 1.69259 1.06487 1.26651 1.53400 1.25556 0.95717 1.02435 0.94483 0.85376 0.78146 0.78712 0.78337 1.19373 1.20311 1.20957 1.21925 0.94270 0.90351 1.48180 0.90837 1.18892 0.87362 0.85778 0.91066 0.95225 1.24870 1.02243 0.92148 1.01473 1.86581 1.26892 1.10914 1.87392 1.23825 0.95959 1.02365 1.00895 1.21998 0.96767 0.81961 1.00967 1.48162 1.18346 1.09423 1.59198 1.17204 0.81632 0.85782 0.78522 1.90872 1.82014 1.20812 1.45868 1.22279 0.99277 0.85516 1.08227 1.22195 0.92853 1.00816 1.00119 1.22147 1.03775 0.92490 1.06325 1.25480 0.83209 1.00164 0.97933 1.84181 1.38500 1.22211 1.61345 0.92235 0.95518 0.81913 0.83993 0.91116 0.89837 0.86532 0.83364 0.79742 0.72536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 9.77 21.45 0.21 -51.36 16 2 C 0.01 0.84 5.29 84.65 0.45 1.28 16 3 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.51 -29.09 7.01 25.60 0.18 -28.91 16 8 H 0.07 4.44 5.32 -4.73 -0.03 4.41 16 9 C 0.27 14.03 3.11 44.35 0.14 14.17 16 10 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 11 C -0.06 -3.00 5.01 72.07 0.36 -2.64 16 12 S -0.34 -14.22 22.33 -56.49 -1.26 -15.48 16 13 C -0.08 -2.62 6.68 72.06 0.48 -2.14 16 14 C 0.11 3.53 5.84 86.48 0.51 4.04 16 15 N -0.62 -27.16 2.79 -806.38 -2.25 -29.41 16 16 C 0.58 26.22 6.95 86.44 0.60 26.82 16 17 O -0.52 -27.86 13.36 -4.32 -0.06 -27.91 16 18 C -0.10 -3.52 6.62 24.07 0.16 -3.36 16 19 C -0.14 -4.16 10.63 22.39 0.24 -3.93 16 20 C -0.23 -4.55 10.87 22.07 0.24 -4.31 16 21 C 0.00 0.01 12.08 67.10 0.81 0.82 16 22 O -0.17 -4.44 7.75 -5.08 -0.04 -4.48 16 23 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.16 9.17 5.00 -7.53 -0.04 9.13 16 26 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.12 3.28 4.70 -2.39 -0.01 3.27 16 30 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.26 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -69.48 275.14 3.90 -65.58 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.11 Total: 12.83 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 4.16 Total: 1.85 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.04 Total: -80.77 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.10 Total: -32.40 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: -14.22 SS G_CDS: -1.26 Total: -15.48 kcal Total: -69.48 3.90 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766347.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.396 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds