Wall clock time and date at job start Mon Mar 30 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31248 * 124.05064 * 2 1 4 4 N 1.27330 * 120.03627 * 180.02562 * 3 2 1 5 5 S 1.56637 * 109.74167 * 359.97438 * 4 3 2 6 6 C 1.38239 * 124.05981 * 180.02562 * 2 1 3 7 7 C 1.47173 * 128.47456 * 0.23826 * 6 2 1 8 8 O 1.21616 * 119.99793 * 359.70022 * 7 6 2 9 9 N 1.34778 * 119.99608 * 179.69924 * 7 6 2 10 10 C 1.47014 * 125.65235 * 355.16668 * 9 7 6 11 11 C 1.54324 * 107.27124 * 181.02244 * 10 9 7 12 12 C 1.55154 * 102.94315 * 22.19490 * 11 10 9 13 13 C 1.47431 * 125.64534 * 174.86007 * 9 7 6 14 14 H 1.08999 * 110.36326 * 274.74809 * 13 9 7 15 15 C 1.50703 * 110.36633 * 37.06723 * 13 9 7 16 16 H 1.08008 * 119.99509 * 35.00664 * 15 13 9 17 17 C 1.37876 * 120.00365 * 215.00750 * 15 13 9 18 18 N 1.31514 * 120.00177 * 184.95480 * 17 15 13 19 19 Si 1.86798 * 119.99492 * 4.95297 * 17 15 13 20 20 H 1.48498 * 109.47270 * 84.93474 * 19 17 15 21 21 H 1.48507 * 109.46898 * 204.93248 * 19 17 15 22 22 H 1.48501 * 109.47481 * 324.93355 * 19 17 15 23 23 H 1.09003 * 109.47208 * 269.96942 * 1 2 3 24 24 H 1.08993 * 109.47765 * 29.97607 * 1 2 3 25 25 H 1.09001 * 109.46701 * 149.97945 * 1 2 3 26 26 H 1.09001 * 109.88766 * 300.44250 * 10 9 7 27 27 H 1.08999 * 109.88447 * 61.60567 * 10 9 7 28 28 H 1.09008 * 110.71801 * 140.55907 * 11 10 9 29 29 H 1.09005 * 110.72324 * 263.65281 * 11 10 9 30 30 H 1.08998 * 111.00599 * 82.57148 * 12 11 10 31 31 H 1.09003 * 111.00541 * 206.38186 * 12 11 10 32 32 H 0.97001 * 119.99528 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0875 0.0000 4 7 3.5120 0.9983 -0.0005 5 16 3.9366 -0.5094 -0.0004 6 6 2.2812 -1.1452 -0.0005 7 6 1.8395 -2.5491 -0.0059 8 8 0.6523 -2.8130 -0.0052 9 7 2.7507 -3.5422 -0.0117 10 6 4.2069 -3.3683 -0.1138 11 6 4.8381 -4.7766 -0.1062 12 6 3.6684 -5.6842 -0.5700 13 6 2.4525 -4.9824 0.0899 14 1 2.3620 -5.2783 1.1350 15 6 1.1875 -5.3103 -0.6607 16 1 0.9479 -4.7820 -1.5718 17 6 0.3361 -6.2846 -0.1844 18 7 -0.7167 -6.6393 -0.8883 19 14 0.6781 -7.1008 1.4606 20 1 0.1109 -6.2700 2.5529 21 1 0.0505 -8.4465 1.4854 22 1 2.1447 -7.2351 1.6513 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 4.4549 -2.8560 -1.0435 27 1 4.5723 -2.7937 0.7373 28 1 5.6699 -4.8302 -0.8087 29 1 5.1652 -5.0472 0.8978 30 1 3.5813 -5.6846 -1.6565 31 1 3.7865 -6.6988 -0.1893 32 1 -1.3155 -7.3250 -0.5533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:10 Heat of formation + Delta-G solvation = 45.153462 kcal Electronic energy + Delta-G solvation = -18441.766304 eV Core-core repulsion = 15530.400058 eV Total energy + Delta-G solvation = -2911.366246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72689 -39.27308 -36.69302 -33.12452 -32.58845 -31.22394 -29.37847 -27.92189 -26.74359 -24.67801 -23.10040 -21.54277 -20.24963 -18.61086 -18.27152 -17.45028 -16.41188 -15.90725 -15.49843 -14.88941 -14.23384 -13.78096 -13.74100 -13.20276 -12.98775 -12.80168 -12.65607 -12.50669 -12.23519 -11.93589 -11.60808 -11.37045 -11.17183 -10.90770 -10.53599 -10.19471 -9.97912 -9.87715 -9.64564 -9.51503 -9.48712 -9.15970 -8.58174 -7.83015 -6.10900 -4.07340 -0.04879 0.99455 1.64747 2.14236 3.21666 3.28596 3.33019 3.48321 3.61499 4.06616 4.35489 4.80246 4.80464 4.92806 5.19416 5.29087 5.41948 5.49741 5.74084 5.76909 5.88572 5.89319 6.01798 6.28447 6.38802 6.46832 6.57100 6.98943 7.12965 7.44374 7.79638 8.19750 8.43772 8.81152 8.97858 9.49258 11.02450 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.007375 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.041460 B = 3795.461499 C = 4623.731270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.083 3.917 3 N -0.252 5.252 4 N -0.281 5.281 5 S 0.396 5.604 6 C -0.262 4.262 7 C 0.599 3.401 8 O -0.472 6.472 9 N -0.601 5.601 10 C 0.085 3.915 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.233 3.767 14 H 0.040 0.960 15 C -0.494 4.494 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.888 5.888 19 Si 0.871 3.129 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 7.580 2.703 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 N -0.119 5.119 4 N -0.261 5.261 5 S 0.532 5.468 6 C -0.404 4.404 7 C 0.382 3.618 8 O -0.345 6.345 9 N -0.336 5.336 10 C -0.040 4.040 11 C -0.170 4.170 12 C -0.166 4.166 13 C 0.133 3.867 14 H 0.058 0.942 15 C -0.532 4.532 16 H 0.098 0.902 17 C -0.124 4.124 18 N -0.525 5.525 19 Si 0.698 3.302 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.556 8.523 2.697 14.610 hybrid contribution -1.002 -0.916 0.917 1.638 sum 10.554 7.606 3.614 13.502 Atomic orbital electron populations 1.20508 0.83814 1.04989 1.04175 1.22920 1.00192 0.85280 0.97942 1.70629 0.97174 1.28328 1.15726 1.78689 1.09406 1.17401 1.20602 1.82667 1.11411 1.00205 1.52497 1.28399 0.96868 1.01179 1.13907 1.16031 0.85840 0.80567 0.79387 1.90915 1.14748 1.81434 1.47397 1.48867 1.04678 1.08570 1.71475 1.22103 0.82719 0.98873 1.00299 1.22622 0.98623 0.93948 1.01820 1.23043 0.93653 0.98093 1.01764 1.20174 0.95551 0.74875 0.96100 0.94233 1.20823 1.02867 1.19543 1.09976 0.90236 1.24911 0.94488 0.96359 0.96593 1.69873 1.14050 1.30746 1.37854 0.86974 0.78680 0.79036 0.85471 1.20063 1.21229 1.19173 0.89656 0.90336 0.87625 0.91855 0.92280 0.90738 0.91158 0.90547 0.91030 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.90 36.00 0.36 -0.74 16 2 C 0.08 1.36 7.00 -82.84 -0.58 0.78 16 3 N -0.25 -4.14 11.54 33.42 0.39 -3.76 16 4 N -0.28 -4.36 12.51 60.35 0.75 -3.60 16 5 S 0.40 5.30 19.67 -107.50 -2.11 3.18 16 6 C -0.26 -4.47 6.66 -35.96 -0.24 -4.71 16 7 C 0.60 12.37 7.65 -12.63 -0.10 12.27 16 8 O -0.47 -11.63 13.39 5.26 0.07 -11.56 16 9 N -0.60 -11.78 3.24 -165.57 -0.54 -12.32 16 10 C 0.09 1.22 5.26 -3.07 -0.02 1.21 16 11 C -0.13 -1.76 6.95 -24.90 -0.17 -1.94 16 12 C -0.13 -2.26 6.50 -24.47 -0.16 -2.42 16 13 C 0.23 5.13 2.85 -67.45 -0.19 4.94 16 14 H 0.04 0.91 5.25 -51.93 -0.27 0.63 16 15 C -0.49 -13.41 7.07 -34.44 -0.24 -13.65 16 16 H 0.08 2.45 7.92 -52.48 -0.42 2.03 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 19 Si 0.87 20.77 27.03 -169.99 -4.59 16.17 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -5.82 6.76 56.52 0.38 -5.44 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.11 1.76 6.46 -51.93 -0.34 1.43 16 26 H 0.06 0.82 7.38 -51.93 -0.38 0.43 16 27 H 0.06 0.72 6.82 -51.93 -0.35 0.37 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -31.96 278.52 -5.95 -37.91 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.45 Total: -2.21 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.44 Total: -2.10 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 1.38 Total: -45.59 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.59 Total: 16.17 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -2.11 Total: 3.18 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.96 -5.95 -37.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.064 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds