Wall clock time and date at job start Mon Mar 30 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31248 * 124.05064 * 2 1 4 4 N 1.27330 * 120.03627 * 180.02562 * 3 2 1 5 5 S 1.56637 * 109.74167 * 359.97438 * 4 3 2 6 6 C 1.38239 * 124.05981 * 180.02562 * 2 1 3 7 7 C 1.47173 * 128.47456 * 0.23826 * 6 2 1 8 8 O 1.21616 * 119.99793 * 359.70022 * 7 6 2 9 9 N 1.34778 * 119.99608 * 179.69924 * 7 6 2 10 10 C 1.47014 * 125.65235 * 355.16668 * 9 7 6 11 11 C 1.54324 * 107.27124 * 181.02244 * 10 9 7 12 12 C 1.55154 * 102.94315 * 22.19490 * 11 10 9 13 13 C 1.47431 * 125.64534 * 174.86007 * 9 7 6 14 14 H 1.08999 * 110.36326 * 274.74809 * 13 9 7 15 15 C 1.50703 * 110.36633 * 37.06723 * 13 9 7 16 16 H 1.08008 * 119.99509 * 35.00664 * 15 13 9 17 17 C 1.37876 * 120.00365 * 215.00750 * 15 13 9 18 18 N 1.31514 * 120.00177 * 184.95480 * 17 15 13 19 19 Si 1.86798 * 119.99492 * 4.95297 * 17 15 13 20 20 H 1.48498 * 109.47270 * 84.93474 * 19 17 15 21 21 H 1.48507 * 109.46898 * 204.93248 * 19 17 15 22 22 H 1.48501 * 109.47481 * 324.93355 * 19 17 15 23 23 H 1.09003 * 109.47208 * 269.96942 * 1 2 3 24 24 H 1.08993 * 109.47765 * 29.97607 * 1 2 3 25 25 H 1.09001 * 109.46701 * 149.97945 * 1 2 3 26 26 H 1.09001 * 109.88766 * 300.44250 * 10 9 7 27 27 H 1.08999 * 109.88447 * 61.60567 * 10 9 7 28 28 H 1.09008 * 110.71801 * 140.55907 * 11 10 9 29 29 H 1.09005 * 110.72324 * 263.65281 * 11 10 9 30 30 H 1.08998 * 111.00599 * 82.57148 * 12 11 10 31 31 H 1.09003 * 111.00541 * 206.38186 * 12 11 10 32 32 H 0.97001 * 119.99528 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0875 0.0000 4 7 3.5120 0.9983 -0.0005 5 16 3.9366 -0.5094 -0.0004 6 6 2.2812 -1.1452 -0.0005 7 6 1.8395 -2.5491 -0.0059 8 8 0.6523 -2.8130 -0.0052 9 7 2.7507 -3.5422 -0.0117 10 6 4.2069 -3.3683 -0.1138 11 6 4.8381 -4.7766 -0.1062 12 6 3.6684 -5.6842 -0.5700 13 6 2.4525 -4.9824 0.0899 14 1 2.3620 -5.2783 1.1350 15 6 1.1875 -5.3103 -0.6607 16 1 0.9479 -4.7820 -1.5718 17 6 0.3361 -6.2846 -0.1844 18 7 -0.7167 -6.6393 -0.8883 19 14 0.6781 -7.1008 1.4606 20 1 0.1109 -6.2700 2.5529 21 1 0.0505 -8.4465 1.4854 22 1 2.1447 -7.2351 1.6513 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 4.4549 -2.8560 -1.0435 27 1 4.5723 -2.7937 0.7373 28 1 5.6699 -4.8302 -0.8087 29 1 5.1652 -5.0472 0.8978 30 1 3.5813 -5.6846 -1.6565 31 1 3.7865 -6.6988 -0.1893 32 1 -1.3155 -7.3250 -0.5533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:09 Heat of formation + Delta-G solvation = 21.536695 kcal Electronic energy + Delta-G solvation = -18442.790403 eV Core-core repulsion = 15530.400058 eV Total energy + Delta-G solvation = -2912.390345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.99347 -40.78495 -38.22447 -34.79445 -34.23381 -32.67458 -30.99924 -29.23872 -27.98982 -26.40045 -24.61112 -22.81365 -21.67504 -20.11928 -19.57246 -19.29276 -17.87091 -17.26710 -17.01587 -16.44427 -15.74824 -15.36065 -15.16737 -14.75767 -14.35678 -14.29423 -13.99006 -13.92444 -13.53562 -13.42909 -13.07414 -12.82985 -12.57813 -12.45493 -12.11109 -11.84555 -11.56725 -11.31729 -11.13578 -10.92238 -10.84140 -10.73073 -10.62263 -9.42738 -8.24293 -6.24052 -1.31712 -0.23369 0.44597 0.85555 1.31507 1.37321 1.44234 1.99810 2.09579 2.35294 2.81217 3.13526 3.49102 3.58885 3.81306 4.10243 4.19780 4.27364 4.47692 4.55121 4.62827 4.72977 4.77813 5.04762 5.13817 5.17319 5.21957 5.44461 5.55133 5.61584 6.32426 6.53477 6.63000 6.80839 7.25106 7.37220 8.94045 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.007375 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.041460 B = 3795.461499 C = 4623.731270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.085 3.915 3 N -0.269 5.269 4 N -0.296 5.296 5 S 0.512 5.488 6 C -0.304 4.304 7 C 0.593 3.407 8 O -0.533 6.533 9 N -0.608 5.608 10 C 0.072 3.928 11 C -0.116 4.116 12 C -0.125 4.125 13 C 0.224 3.776 14 H 0.039 0.961 15 C -0.488 4.488 16 H 0.022 0.978 17 C 0.012 3.988 18 N -0.949 5.949 19 Si 0.937 3.063 20 H -0.283 1.283 21 H -0.285 1.285 22 H -0.225 1.225 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.022 8.215 4.271 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 N -0.134 5.134 4 N -0.277 5.277 5 S 0.648 5.352 6 C -0.445 4.445 7 C 0.378 3.622 8 O -0.410 6.410 9 N -0.342 5.342 10 C -0.052 4.052 11 C -0.153 4.153 12 C -0.164 4.164 13 C 0.123 3.877 14 H 0.056 0.944 15 C -0.526 4.526 16 H 0.040 0.960 17 C -0.185 4.185 18 N -0.589 5.589 19 Si 0.761 3.239 20 H -0.210 1.210 21 H -0.210 1.210 22 H -0.147 1.147 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.839 9.184 4.261 18.798 hybrid contribution -2.190 -0.993 0.334 2.428 sum 13.649 8.190 4.594 16.567 Atomic orbital electron populations 1.20481 0.83500 1.04642 1.04706 1.23112 1.00836 0.85336 0.96917 1.70725 0.97362 1.28123 1.17198 1.78436 1.09342 1.19480 1.20393 1.82099 1.07020 0.97254 1.48806 1.27950 1.00272 0.99351 1.16901 1.16423 0.85344 0.82098 0.78320 1.90882 1.17223 1.82852 1.50039 1.48799 1.07181 1.07395 1.70801 1.22560 0.79228 1.00805 1.02572 1.22663 0.97484 0.91042 1.04142 1.22893 0.93659 0.99194 1.00665 1.20170 0.94985 0.76989 0.95531 0.94359 1.20967 1.05122 1.18156 1.08372 0.96006 1.25840 0.94333 0.97585 1.00771 1.70058 1.16054 1.32462 1.40342 0.85912 0.80940 0.77441 0.79628 1.20972 1.21046 1.14735 0.88688 0.88085 0.90391 0.89993 0.89174 0.86907 0.88728 0.91964 0.90018 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.20 9.90 71.23 0.71 -1.49 16 2 C 0.09 2.76 7.00 42.65 0.30 3.05 16 3 N -0.27 -8.37 11.54 -48.18 -0.56 -8.93 16 4 N -0.30 -8.28 12.51 37.02 0.46 -7.82 16 5 S 0.51 11.73 19.67 -56.49 -1.11 10.62 16 6 C -0.30 -10.05 6.66 24.62 0.16 -9.88 16 7 C 0.59 24.87 7.65 86.59 0.66 25.53 16 8 O -0.53 -27.92 13.39 -4.08 -0.05 -27.98 16 9 N -0.61 -23.14 3.24 -795.99 -2.58 -25.72 16 10 C 0.07 1.74 5.26 86.73 0.46 2.20 16 11 C -0.12 -2.45 6.95 31.78 0.22 -2.23 16 12 C -0.13 -4.13 6.50 32.06 0.21 -3.92 16 13 C 0.22 9.74 2.85 44.80 0.13 9.87 16 14 H 0.04 1.68 5.25 -2.39 -0.01 1.67 16 15 C -0.49 -27.75 7.07 25.60 0.18 -27.57 16 16 H 0.02 1.45 7.92 -2.91 -0.02 1.42 16 17 C 0.01 0.69 5.47 84.65 0.46 1.15 16 18 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 19 Si 0.94 43.40 27.03 68.60 1.85 45.26 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.22 -8.78 6.76 99.48 0.67 -8.11 16 23 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.08 2.81 6.46 -2.39 -0.02 2.80 16 26 H 0.08 1.71 7.38 -2.39 -0.02 1.69 16 27 H 0.09 1.67 6.82 -2.39 -0.02 1.65 16 28 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -76.93 278.52 2.92 -74.01 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.12 Total: 4.13 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 3.49 Total: -3.29 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -2.37 Total: -102.75 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.85 Total: 45.26 kcal Atomic # 16 Polarization: 11.73 SS G_CDS: -1.11 Total: 10.62 kcal Total: -76.93 2.92 -74.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.542 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds