Wall clock time and date at job start Mon Mar 30 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00398 * 2 1 4 4 C 1.50697 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.28603 * 125.06968 * 89.97819 * 4 3 2 6 6 C 1.33564 * 116.44375 * 180.02562 * 5 4 3 7 7 C 1.37983 * 113.79755 * 0.05715 * 6 5 4 8 8 S 1.70543 * 109.08843 * 359.93460 * 7 6 5 9 9 C 1.51004 * 124.04192 * 179.86232 * 7 6 5 10 10 C 1.53075 * 109.36612 * 339.69841 * 9 7 6 11 11 H 1.08993 * 109.36296 * 292.11471 * 10 9 7 12 12 C 1.50697 * 109.36463 * 172.50144 * 10 9 7 13 13 H 1.08002 * 120.00363 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00060 * 180.02562 * 12 10 9 15 15 N 1.31521 * 119.99891 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 120.00070 * 359.97438 * 14 12 10 17 17 H 1.48505 * 109.46665 * 89.99993 * 16 14 12 18 18 H 1.48495 * 109.47304 * 210.00190 * 16 14 12 19 19 H 1.48495 * 109.46995 * 330.00537 * 16 14 12 20 20 C 1.53217 * 110.10250 * 52.30888 * 10 9 7 21 21 C 1.48452 * 126.01685 * 180.09997 * 6 5 4 22 22 O 1.21353 * 122.18552 * 347.92926 * 21 6 5 23 23 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46879 * 300.00037 * 1 2 3 25 25 H 1.09007 * 109.46810 * 59.99725 * 1 2 3 26 26 H 1.09009 * 109.46591 * 60.00001 * 3 2 1 27 27 H 1.08991 * 109.47306 * 300.00537 * 3 2 1 28 28 H 1.09002 * 109.49324 * 219.72300 * 9 7 6 29 29 H 1.08996 * 109.48816 * 99.67080 * 9 7 6 30 30 H 0.97001 * 119.99243 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.63864 * 54.74016 * 20 10 9 32 32 H 1.08998 * 109.63564 * 175.35375 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2495 1.1274 -1.0516 6 6 5.5658 1.0227 -0.8507 7 6 5.9252 0.9932 0.4812 8 16 4.5198 1.1060 1.4406 9 6 7.3491 0.8767 0.9701 10 6 8.2240 0.3025 -0.1470 11 1 7.9419 -0.7342 -0.3302 12 6 9.6703 0.3574 0.2729 13 1 9.9375 0.7613 1.2383 14 6 10.6526 -0.1070 -0.5758 15 7 11.9148 -0.0596 -0.2092 16 14 10.1907 -0.8050 -2.2458 17 1 10.1834 0.2860 -3.2534 18 1 11.1814 -1.8379 -2.6419 19 1 8.8402 -1.4176 -2.1699 20 6 8.0370 1.1148 -1.4326 21 6 6.6063 0.9417 -1.9065 22 8 6.3303 0.7499 -3.0726 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 7.3835 0.2150 1.8356 29 1 7.7188 1.8628 1.2513 30 1 12.6058 -0.3867 -0.8062 31 1 8.2314 2.1684 -1.2317 32 1 8.7230 0.7521 -2.1980 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259884147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:26 Heat of formation + Delta-G solvation = -40.766593 kcal Electronic energy + Delta-G solvation = -17741.251028 eV Core-core repulsion = 14793.866258 eV Total energy + Delta-G solvation = -2947.384770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12319 -38.36554 -37.55403 -35.86310 -32.52086 -30.71822 -29.04500 -27.85547 -26.25625 -24.65691 -23.81257 -20.84464 -20.67670 -18.24847 -17.71987 -16.99586 -16.77290 -15.96822 -15.70423 -15.39019 -14.87392 -14.63800 -14.07775 -13.67792 -13.50535 -13.19079 -12.87680 -12.76823 -12.45538 -12.09617 -11.93833 -11.64058 -11.22676 -10.69831 -10.42125 -10.18656 -10.07260 -10.04133 -9.65974 -9.40271 -9.26281 -8.95985 -8.71449 -8.52089 -6.25085 -4.27952 0.52880 1.26754 1.74040 1.86622 3.20733 3.24958 3.33515 3.37349 3.55177 4.04390 4.27010 4.62405 4.81014 5.00709 5.04919 5.05946 5.11186 5.11975 5.22333 5.39477 5.51917 5.75705 5.82546 6.03695 6.20306 6.25228 6.37534 6.75248 6.78322 7.10348 7.47181 7.60598 8.01644 8.27857 8.76295 9.35246 10.86763 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.034283 B = 0.005372 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.528496 B = 5211.255490 C = 5706.158168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.149 3.851 4 C 0.024 3.976 5 N -0.398 5.398 6 C -0.043 4.043 7 C -0.160 4.160 8 S 0.162 5.838 9 C -0.036 4.036 10 C 0.027 3.973 11 H 0.038 0.962 12 C -0.521 4.521 13 H 0.083 0.917 14 C 0.079 3.921 15 N -0.889 5.889 16 Si 0.872 3.128 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.160 4.160 21 C 0.431 3.569 22 O -0.451 6.451 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.754 3.784 4.675 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.069 3.931 4 C -0.256 4.256 5 N -0.112 5.112 6 C -0.176 4.176 7 C -0.283 4.283 8 S 0.421 5.579 9 C -0.076 4.076 10 C 0.006 3.994 11 H 0.056 0.944 12 C -0.558 4.558 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.526 5.526 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.189 1.189 20 C -0.198 4.198 21 C 0.305 3.695 22 O -0.324 6.324 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.101 3.507 4.569 19.950 hybrid contribution 0.259 -0.229 -1.631 1.668 sum -18.842 3.278 2.938 19.350 Atomic orbital electron populations 1.22788 0.80283 1.03200 1.00186 1.87989 1.20044 1.26650 1.95476 1.20696 0.84453 0.85789 1.02202 1.27156 0.99280 1.09324 0.89802 1.66416 1.03676 1.10266 1.30805 1.22092 0.90045 1.11380 0.94082 1.27142 1.03385 1.01129 0.96685 1.83521 0.96699 1.65573 1.12127 1.20473 0.83910 1.03092 1.00081 1.19193 0.96708 0.94980 0.88473 0.94408 1.20836 0.87349 1.42891 1.04773 0.89901 1.24968 0.94856 0.94630 0.98063 1.69865 0.99735 1.45856 1.37115 0.87075 0.78722 0.79351 0.84698 1.19804 1.21711 1.18865 1.22914 0.90634 1.04381 1.01869 1.22963 0.90161 0.70551 0.85819 1.90495 1.85658 1.36352 1.19934 0.89252 0.93779 0.93697 0.90882 0.90123 0.89469 0.88630 0.92213 0.87698 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.71 10.69 -35.23 -0.38 -5.09 16 3 C 0.15 1.66 6.54 36.00 0.24 1.90 16 4 C 0.02 0.36 7.21 -13.63 -0.10 0.26 16 5 N -0.40 -7.51 10.65 -6.33 -0.07 -7.58 16 6 C -0.04 -0.85 6.90 -83.00 -0.57 -1.42 16 7 C -0.16 -2.72 6.31 -34.25 -0.22 -2.94 16 8 S 0.16 2.17 23.14 -107.50 -2.49 -0.31 16 9 C -0.04 -0.64 5.45 -27.70 -0.15 -0.79 16 10 C 0.03 0.59 1.65 -91.62 -0.15 0.44 16 11 H 0.04 0.87 7.21 -51.93 -0.37 0.50 16 12 C -0.52 -13.31 9.14 -34.44 -0.31 -13.63 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 15 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 16 Si 0.87 21.42 24.38 -169.99 -4.14 17.27 16 17 H -0.27 -6.55 6.82 56.52 0.39 -6.16 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 20 C -0.16 -3.44 4.85 -27.27 -0.13 -3.57 16 21 C 0.43 9.39 7.09 -29.60 -0.21 9.18 16 22 O -0.45 -10.91 17.98 5.49 0.10 -10.81 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.10 1.56 8.13 -51.93 -0.42 1.14 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.08 1.95 3.13 -51.93 -0.16 1.79 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -32.01 284.60 -6.03 -38.04 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -3.52 Total: -3.72 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.59 Total: -7.17 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.71 Total: -32.51 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.28 Total: -15.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.27 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.49 Total: -0.31 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.01 -6.03 -38.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.725 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds