Wall clock time and date at job start Mon Mar 30 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00203 * 2 1 4 4 C 1.50694 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.28606 * 125.07453 * 89.98149 * 4 3 2 6 6 C 1.33564 * 116.44189 * 180.02562 * 5 4 3 7 7 C 1.37947 * 113.81045 * 359.94199 * 6 5 4 8 8 S 1.70576 * 109.08605 * 0.06765 * 7 6 5 9 9 C 1.51005 * 124.06563 * 180.11893 * 7 6 5 10 10 C 1.53070 * 109.34721 * 20.33132 * 9 7 6 11 11 H 1.09000 * 109.36618 * 67.87476 * 10 9 7 12 12 C 1.50700 * 109.36698 * 187.61791 * 10 9 7 13 13 H 1.07998 * 119.99998 * 359.97438 * 12 10 9 14 14 C 1.37872 * 119.99970 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00417 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99833 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47162 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47317 * 119.99795 * 16 14 12 19 19 H 1.48499 * 109.47240 * 239.99821 * 16 14 12 20 20 C 1.53214 * 110.10494 * 307.68732 * 10 9 7 21 21 C 1.48456 * 126.01073 * 179.97438 * 6 5 4 22 22 O 1.21354 * 122.18912 * 11.81089 * 21 6 5 23 23 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47059 * 299.99811 * 1 2 3 25 25 H 1.08999 * 109.47400 * 59.99646 * 1 2 3 26 26 H 1.09007 * 109.46822 * 60.00221 * 3 2 1 27 27 H 1.08997 * 109.47355 * 300.00280 * 3 2 1 28 28 H 1.08998 * 109.48693 * 140.29409 * 9 7 6 29 29 H 1.09000 * 109.49081 * 260.34246 * 9 7 6 30 30 H 0.96994 * 120.00116 * 180.02562 * 15 14 12 31 31 H 1.09001 * 109.63415 * 305.25548 * 20 10 9 32 32 H 1.09006 * 109.63807 * 184.65038 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2496 1.1275 -1.0516 6 6 5.5659 1.0227 -0.8505 7 6 5.9255 0.9957 0.4810 8 16 4.5197 1.1071 1.4407 9 6 7.3497 0.8853 0.9704 10 6 8.3045 1.3136 -0.1468 11 1 8.1899 2.3819 -0.3303 12 6 9.7237 1.0279 0.2719 13 1 9.9235 0.5862 1.2369 14 6 10.7671 1.3314 -0.5767 15 7 10.5239 1.8698 -1.7517 16 14 12.5263 0.9779 -0.0575 17 1 12.5302 0.3748 1.2995 18 1 13.1463 0.0326 -1.0205 19 1 13.3010 2.2447 -0.0390 20 6 7.9914 0.5409 -1.4322 21 6 6.6061 0.9391 -1.9063 22 8 6.3631 1.1686 -3.0730 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 7.4881 1.5335 1.8357 29 1 7.5585 -0.1468 1.2520 30 1 11.2579 2.0830 -2.3488 31 1 8.0168 -0.5301 -1.2312 32 1 8.7262 0.7904 -2.1978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884150.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:28 Heat of formation + Delta-G solvation = -70.820423 kcal Electronic energy + Delta-G solvation = -17619.734440 eV Core-core repulsion = 14671.046438 eV Total energy + Delta-G solvation = -2948.688002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41064 -39.48790 -38.61901 -37.31060 -34.31366 -31.66814 -30.15449 -29.07298 -27.15578 -26.25261 -24.93707 -22.64121 -21.87044 -19.44322 -19.14236 -18.32127 -17.56311 -17.14245 -16.64638 -16.44231 -16.39090 -15.96085 -15.66282 -15.04876 -14.77922 -14.70147 -14.05687 -13.71494 -13.38257 -13.28284 -12.95297 -12.86788 -12.48151 -12.34790 -12.31254 -12.00422 -11.51973 -11.34763 -10.86146 -10.70346 -10.62458 -10.46874 -10.35735 -9.74184 -8.12250 -6.29439 -0.68434 0.14601 0.49515 0.60930 1.46307 1.49456 1.59959 1.94338 2.43592 2.54651 3.04032 3.18396 3.57178 3.80975 3.86807 4.09076 4.27596 4.36964 4.41570 4.55922 4.60003 4.63939 4.74403 4.82445 4.90402 4.91855 5.11976 5.52381 5.70365 5.89132 6.09766 6.19867 6.34797 6.67449 6.82769 7.41918 8.92720 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.041272 B = 0.004712 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.257590 B = 5941.035511 C = 6451.023278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.146 3.854 4 C 0.020 3.980 5 N -0.443 5.443 6 C -0.073 4.073 7 C -0.172 4.172 8 S 0.257 5.743 9 C -0.038 4.038 10 C 0.059 3.941 11 H 0.001 0.999 12 C -0.526 4.526 13 H 0.078 0.922 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.962 3.038 17 H -0.256 1.256 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.143 4.143 21 C 0.428 3.572 22 O -0.498 6.498 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -2.142 10.891 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.066 3.934 4 C -0.260 4.260 5 N -0.157 5.157 6 C -0.206 4.206 7 C -0.296 4.296 8 S 0.517 5.483 9 C -0.077 4.077 10 C 0.039 3.961 11 H 0.019 0.981 12 C -0.564 4.564 13 H 0.096 0.904 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.787 3.213 17 H -0.180 1.180 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.181 4.181 21 C 0.306 3.694 22 O -0.375 6.375 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.858 -2.090 10.711 20.082 hybrid contribution 1.583 0.191 -1.345 2.086 sum -15.275 -1.898 9.366 18.018 Atomic orbital electron populations 1.23019 0.78057 1.04272 1.01676 1.87921 1.22482 1.27045 1.95795 1.20955 0.82038 0.86056 1.04312 1.27964 1.01091 1.06901 0.90065 1.66427 1.03778 1.12408 1.33083 1.21935 0.90372 1.13671 0.94609 1.27145 1.04862 1.00807 0.96811 1.83001 0.92920 1.63370 1.09044 1.20518 0.83778 1.03959 0.99420 1.18610 0.94200 0.94096 0.89175 0.98110 1.21480 0.90430 1.41411 1.03065 0.90402 1.25843 1.03548 0.94551 0.94832 1.70006 1.33056 1.43296 1.09624 0.85440 0.79460 0.77526 0.78833 1.17986 1.21190 1.21238 1.22372 0.90833 1.01414 1.03501 1.23459 0.90099 0.70149 0.85722 1.90422 1.84853 1.40431 1.21787 0.88433 0.91462 0.93051 0.86955 0.89826 0.88132 0.87629 0.92831 0.88988 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.40 10.69 -148.98 -1.59 -10.99 16 3 C 0.15 3.07 6.54 71.23 0.47 3.54 16 4 C 0.02 0.58 7.21 88.58 0.64 1.22 16 5 N -0.44 -17.69 10.65 -173.97 -1.85 -19.54 16 6 C -0.07 -3.12 6.90 41.54 0.29 -2.84 16 7 C -0.17 -6.02 6.31 25.71 0.16 -5.86 16 8 S 0.26 6.47 23.14 -56.49 -1.31 5.16 16 9 C -0.04 -1.34 5.45 29.97 0.16 -1.18 16 10 C 0.06 2.78 2.06 -11.44 -0.02 2.75 16 11 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 12 C -0.53 -26.07 8.55 25.60 0.22 -25.85 16 13 H 0.08 3.58 7.74 -2.91 -0.02 3.55 16 14 C 0.01 0.59 5.29 84.65 0.45 1.04 16 15 N -0.92 -52.21 11.24 21.45 0.24 -51.97 16 16 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 18 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.14 -6.95 5.20 30.25 0.16 -6.79 16 21 C 0.43 21.08 7.09 28.74 0.20 21.28 16 22 O -0.50 -27.47 17.98 -3.26 -0.06 -27.53 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.11 3.40 8.13 -2.39 -0.02 3.38 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.09 4.12 8.14 -2.39 -0.02 4.10 16 32 H 0.10 5.33 5.91 -2.38 -0.01 5.32 16 Total: -1.00 -69.75 291.38 2.56 -67.18 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.14 Total: 5.67 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.97 Total: -11.09 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.61 Total: -71.51 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.65 Total: -38.52 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.31 Total: 5.16 kcal Total: -69.75 2.56 -67.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884150.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.640 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds