Wall clock time and date at job start Mon Mar 30 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33428 * 125.97051 * 2 1 4 4 N 1.32009 * 114.57161 * 179.75049 * 3 2 1 5 5 C 1.29635 * 116.90438 * 0.47246 * 4 3 2 6 6 N 1.38952 * 124.94000 * 179.81036 * 5 4 3 7 7 C 1.46383 * 119.33303 * 359.71876 * 6 5 4 8 8 C 1.53213 * 109.14914 * 209.05814 * 7 6 5 9 9 C 1.53245 * 108.57570 * 304.51207 * 8 7 6 10 10 N 1.46385 * 109.15195 * 55.46815 * 9 8 7 11 11 C 1.37160 * 119.32698 * 150.94087 * 10 9 8 12 12 H 1.08002 * 119.99842 * 204.13507 * 11 10 9 13 13 C 1.38883 * 120.00261 * 24.13900 * 11 10 9 14 14 N 1.31477 * 119.99682 * 11.20466 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 191.20690 * 13 11 10 16 16 H 1.48500 * 109.47220 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46823 * 119.99731 * 15 13 11 18 18 H 1.48493 * 109.47149 * 239.99685 * 15 13 11 19 19 C 1.34135 * 119.32838 * 179.69423 * 6 5 4 20 20 O 1.21592 * 118.69805 * 359.45672 * 19 6 5 21 21 S 1.70964 * 110.11299 * 359.54751 * 5 4 3 22 22 H 1.09003 * 109.47025 * 270.00540 * 1 2 3 23 23 H 1.08995 * 109.46920 * 30.00140 * 1 2 3 24 24 H 1.08991 * 109.47459 * 150.00326 * 1 2 3 25 25 H 1.07999 * 122.71142 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.51972 * 328.94195 * 7 6 5 27 27 H 1.09004 * 109.51938 * 89.06520 * 7 6 5 28 28 H 1.08998 * 109.62689 * 184.78358 * 8 7 6 29 29 H 1.09002 * 109.60668 * 64.23304 * 8 7 6 30 30 H 1.09000 * 109.52201 * 295.57221 * 9 8 7 31 31 H 1.09002 * 109.52429 * 175.37283 * 9 8 7 32 32 H 0.97004 * 119.99501 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2907 1.0799 0.0000 4 7 3.5848 0.8190 0.0052 5 6 3.9314 -0.4302 0.0001 6 7 5.2417 -0.8925 0.0005 7 6 6.3426 0.0724 0.0009 8 6 7.5547 -0.5478 -0.7017 9 6 7.8946 -1.8725 -0.0104 10 7 6.7095 -2.7318 -0.0097 11 6 6.8676 -4.0943 -0.0208 12 1 6.0797 -4.7262 -0.4032 13 6 8.0408 -4.6612 0.4599 14 7 8.9036 -3.9236 1.1234 15 14 8.3929 -6.4717 0.1637 16 1 7.2733 -7.0748 -0.6030 17 1 9.6531 -6.6107 -0.6095 18 1 8.5327 -7.1685 1.4675 19 6 5.4722 -2.2139 0.0011 20 8 4.5219 -2.9723 0.0113 21 16 2.5416 -1.4259 0.0001 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3634 -0.8899 -0.5137 25 1 1.8981 2.0860 -0.0004 26 1 6.0366 0.9742 -0.5292 27 1 6.6051 0.3250 1.0283 28 1 8.4051 0.1304 -0.6315 29 1 7.3155 -0.7323 -1.7490 30 1 8.2044 -1.6785 1.0165 31 1 8.7031 -2.3673 -0.5486 32 1 9.7231 -4.3196 1.4588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:31 Heat of formation + Delta-G solvation = 37.384888 kcal Electronic energy + Delta-G solvation = -18347.842331 eV Core-core repulsion = 15436.139214 eV Total energy + Delta-G solvation = -2911.703116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33774 -38.80745 -35.72469 -35.38097 -32.42466 -31.36425 -30.40650 -26.57339 -26.24375 -24.64208 -23.03675 -22.27425 -20.02774 -18.45975 -17.58534 -17.11557 -16.11687 -15.95186 -15.57048 -14.76844 -14.30452 -14.09696 -13.71495 -13.46774 -13.26494 -13.03892 -12.67472 -12.42910 -12.32745 -11.74976 -11.54106 -11.23615 -10.86294 -10.72205 -10.48609 -10.39265 -10.25427 -9.64303 -9.12695 -9.12207 -8.85736 -8.53273 -7.96364 -7.39077 -6.44161 -4.02333 1.38518 1.76050 2.54088 3.07398 3.09666 3.21749 3.29296 3.31291 4.03799 4.12341 4.86584 4.96713 5.01225 5.31186 5.39524 5.46549 5.47105 5.64613 5.70746 5.93260 5.96216 6.03237 6.18087 6.21286 6.48706 6.76893 6.98800 7.08205 7.18961 7.46662 8.07896 8.28830 8.40359 8.97990 9.24980 9.74387 10.61184 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.006008 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.182360 B = 4659.140731 C = 5406.366577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.330 4.330 3 C 0.060 3.940 4 N -0.543 5.543 5 C 0.282 3.718 6 N -0.524 5.524 7 C 0.120 3.880 8 C -0.162 4.162 9 C 0.138 3.862 10 N -0.436 5.436 11 C -0.297 4.297 12 H 0.104 0.896 13 C 0.031 3.969 14 N -0.884 5.884 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.640 3.360 20 O -0.593 6.593 21 S 0.251 5.749 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.161 0.839 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 7.623 -2.421 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.453 4.453 3 C -0.091 4.091 4 N -0.268 5.268 5 C -0.085 4.085 6 N -0.255 5.255 7 C -0.004 4.004 8 C -0.201 4.201 9 C 0.015 3.985 10 N -0.156 5.156 11 C -0.425 4.425 12 H 0.122 0.878 13 C -0.173 4.173 14 N -0.523 5.523 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.344 3.656 20 O -0.477 6.477 21 S 0.502 5.498 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.178 0.822 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.837 6.387 -2.319 8.958 hybrid contribution 0.319 0.399 0.031 0.512 sum -5.518 6.786 -2.288 9.040 Atomic orbital electron populations 1.19959 0.88003 1.02116 1.01720 1.26478 1.01926 0.99833 1.17051 1.21023 0.86296 0.99262 1.02569 1.66328 1.18379 1.16611 1.25467 1.23244 0.91623 0.92607 1.01041 1.44061 1.01966 1.06407 1.73101 1.21647 0.85457 0.91865 1.01466 1.22477 0.97601 0.99548 1.00506 1.21490 0.88686 0.87139 1.01203 1.42627 1.00972 1.06746 1.65247 1.19695 1.03443 0.79698 1.39631 0.87834 1.25387 0.96481 1.00412 0.94998 1.70007 1.11091 1.36619 1.34605 0.85740 0.78456 0.81580 0.78242 1.19095 1.20578 1.20621 1.15577 0.85911 0.79476 0.84669 1.90600 1.40049 1.54991 1.62017 1.85160 0.92244 1.03761 1.68634 0.91757 0.91584 0.91957 0.82221 0.89447 0.91386 0.89020 0.91325 0.90823 0.89356 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.41 36.01 0.37 -0.30 16 2 C -0.33 -5.20 6.58 -35.99 -0.24 -5.44 16 3 C 0.06 0.98 11.24 -19.16 -0.22 0.76 16 4 N -0.54 -10.35 9.77 -15.13 -0.15 -10.50 16 5 C 0.28 5.85 7.65 -87.39 -0.67 5.18 16 6 N -0.52 -11.32 3.02 -123.14 -0.37 -11.69 16 7 C 0.12 2.13 6.32 -4.00 -0.03 2.10 16 8 C -0.16 -2.74 6.20 -26.49 -0.16 -2.90 16 9 C 0.14 2.97 4.75 -3.98 -0.02 2.95 16 10 N -0.44 -10.98 2.96 -120.51 -0.36 -11.33 16 11 C -0.30 -7.97 9.16 -14.93 -0.14 -8.11 16 12 H 0.10 2.90 7.34 -52.49 -0.38 2.52 16 13 C 0.03 0.78 5.08 -17.46 -0.09 0.69 16 14 N -0.88 -22.61 10.64 55.49 0.59 -22.02 16 15 Si 0.93 20.06 29.57 -169.99 -5.03 15.03 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.64 15.94 7.86 -88.06 -0.69 15.25 16 20 O -0.59 -15.89 12.99 5.28 0.07 -15.83 16 21 S 0.25 4.85 20.03 -107.50 -2.15 2.69 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 26 H 0.09 1.43 7.60 -51.93 -0.39 1.04 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.67 7.53 -51.93 -0.39 1.28 16 31 H 0.09 1.98 7.04 -51.93 -0.37 1.61 16 32 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -29.74 280.30 -8.68 -38.42 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.63 Total: 0.83 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.87 Total: 10.18 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.29 Total: -55.55 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.07 Total: -15.83 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -2.15 Total: 2.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.74 -8.68 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.801 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds