Wall clock time and date at job start Mon Mar 30 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33428 * 125.97051 * 2 1 4 4 N 1.32009 * 114.57161 * 179.75049 * 3 2 1 5 5 C 1.29635 * 116.90438 * 0.47246 * 4 3 2 6 6 N 1.38952 * 124.94000 * 179.81036 * 5 4 3 7 7 C 1.46383 * 119.33303 * 359.71876 * 6 5 4 8 8 C 1.53213 * 109.14914 * 209.05814 * 7 6 5 9 9 C 1.53245 * 108.57570 * 304.51207 * 8 7 6 10 10 N 1.46385 * 109.15195 * 55.46815 * 9 8 7 11 11 C 1.37160 * 119.32698 * 150.94087 * 10 9 8 12 12 H 1.08002 * 119.99842 * 204.13507 * 11 10 9 13 13 C 1.38883 * 120.00261 * 24.13900 * 11 10 9 14 14 N 1.31477 * 119.99682 * 11.20466 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 191.20690 * 13 11 10 16 16 H 1.48500 * 109.47220 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46823 * 119.99731 * 15 13 11 18 18 H 1.48493 * 109.47149 * 239.99685 * 15 13 11 19 19 C 1.34135 * 119.32838 * 179.69423 * 6 5 4 20 20 O 1.21592 * 118.69805 * 359.45672 * 19 6 5 21 21 S 1.70964 * 110.11299 * 359.54751 * 5 4 3 22 22 H 1.09003 * 109.47025 * 270.00540 * 1 2 3 23 23 H 1.08995 * 109.46920 * 30.00140 * 1 2 3 24 24 H 1.08991 * 109.47459 * 150.00326 * 1 2 3 25 25 H 1.07999 * 122.71142 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.51972 * 328.94195 * 7 6 5 27 27 H 1.09004 * 109.51938 * 89.06520 * 7 6 5 28 28 H 1.08998 * 109.62689 * 184.78358 * 8 7 6 29 29 H 1.09002 * 109.60668 * 64.23304 * 8 7 6 30 30 H 1.09000 * 109.52201 * 295.57221 * 9 8 7 31 31 H 1.09002 * 109.52429 * 175.37283 * 9 8 7 32 32 H 0.97004 * 119.99501 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2907 1.0799 0.0000 4 7 3.5848 0.8190 0.0052 5 6 3.9314 -0.4302 0.0001 6 7 5.2417 -0.8925 0.0005 7 6 6.3426 0.0724 0.0009 8 6 7.5547 -0.5478 -0.7017 9 6 7.8946 -1.8725 -0.0104 10 7 6.7095 -2.7318 -0.0097 11 6 6.8676 -4.0943 -0.0208 12 1 6.0797 -4.7262 -0.4032 13 6 8.0408 -4.6612 0.4599 14 7 8.9036 -3.9236 1.1234 15 14 8.3929 -6.4717 0.1637 16 1 7.2733 -7.0748 -0.6030 17 1 9.6531 -6.6107 -0.6095 18 1 8.5327 -7.1685 1.4675 19 6 5.4722 -2.2139 0.0011 20 8 4.5219 -2.9723 0.0113 21 16 2.5416 -1.4259 0.0001 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3634 -0.8899 -0.5137 25 1 1.8981 2.0860 -0.0004 26 1 6.0366 0.9742 -0.5292 27 1 6.6051 0.3250 1.0283 28 1 8.4051 0.1304 -0.6315 29 1 7.3155 -0.7323 -1.7490 30 1 8.2044 -1.6785 1.0165 31 1 8.7031 -2.3673 -0.5486 32 1 9.7231 -4.3196 1.4588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:31 Heat of formation + Delta-G solvation = 19.953864 kcal Electronic energy + Delta-G solvation = -18348.598197 eV Core-core repulsion = 15436.139214 eV Total energy + Delta-G solvation = -2912.458982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02911 -40.28316 -37.52798 -37.04990 -34.09337 -32.80620 -32.04952 -28.03499 -27.91457 -26.26035 -24.50344 -23.90400 -21.57143 -19.91387 -19.31044 -18.86930 -17.83589 -17.52017 -17.23814 -16.53958 -15.87065 -15.54213 -15.22245 -15.18589 -14.68137 -14.61433 -13.88384 -13.66070 -13.49706 -13.37339 -13.22508 -12.94362 -12.40906 -12.32825 -12.28053 -12.06640 -11.81546 -11.14417 -10.97434 -10.63755 -10.58115 -10.05239 -9.82913 -8.87731 -8.37083 -6.03565 -0.05763 0.31117 1.13195 1.38558 1.40383 1.50784 1.63956 1.82334 2.28233 2.33884 3.05515 3.19524 3.62052 3.83524 3.98159 4.24075 4.28819 4.45006 4.52114 4.63361 4.76277 4.84900 4.98041 5.06477 5.09753 5.26984 5.37155 5.43468 5.52404 5.59879 6.16953 6.46166 6.87173 7.04540 7.36352 7.85810 8.66806 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.006008 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.182360 B = 4659.140731 C = 5406.366577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.296 4.296 3 C 0.042 3.958 4 N -0.538 5.538 5 C 0.251 3.749 6 N -0.530 5.530 7 C 0.118 3.882 8 C -0.146 4.146 9 C 0.143 3.857 10 N -0.452 5.452 11 C -0.331 4.331 12 H 0.078 0.922 13 C 0.000 4.000 14 N -0.898 5.898 15 Si 0.996 3.004 16 H -0.272 1.272 17 H -0.265 1.265 18 H -0.276 1.276 19 C 0.635 3.365 20 O -0.626 6.626 21 S 0.197 5.803 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.200 0.800 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 9.299 -2.674 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.419 4.419 3 C -0.107 4.107 4 N -0.262 5.262 5 C -0.115 4.115 6 N -0.262 5.262 7 C -0.004 4.004 8 C -0.184 4.184 9 C 0.020 3.980 10 N -0.173 5.173 11 C -0.459 4.459 12 H 0.096 0.904 13 C -0.202 4.202 14 N -0.537 5.537 15 Si 0.820 3.180 16 H -0.197 1.197 17 H -0.189 1.189 18 H -0.202 1.202 19 C 0.338 3.662 20 O -0.511 6.511 21 S 0.447 5.553 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.217 0.783 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.457 8.130 -2.571 10.696 hybrid contribution 0.344 -0.006 0.144 0.373 sum -6.112 8.124 -2.426 10.452 Atomic orbital electron populations 1.20182 0.84618 1.03899 1.03331 1.26853 1.03618 0.97246 1.14180 1.21663 0.85259 1.01119 1.02670 1.66352 1.19989 1.15646 1.24223 1.23382 0.91407 0.93225 1.03519 1.43956 1.03325 1.05661 1.73222 1.21860 0.84712 0.91664 1.02204 1.22422 0.98876 0.97651 0.99495 1.21436 0.87265 0.88687 1.00566 1.42835 1.02019 1.06740 1.65705 1.19636 1.03817 0.80842 1.41615 0.90377 1.26119 0.95670 1.04239 0.94176 1.70086 1.11238 1.38035 1.34310 0.84827 0.78426 0.76623 0.78165 1.19685 1.18932 1.20208 1.15773 0.85551 0.80624 0.84277 1.90574 1.41031 1.56591 1.62938 1.85255 0.93877 1.06943 1.69204 0.90081 0.88557 0.91361 0.78293 0.87614 0.90850 0.84652 0.91440 0.92474 0.90799 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.41 71.24 0.74 -0.44 16 2 C -0.30 -8.63 6.58 24.60 0.16 -8.47 16 3 C 0.04 1.26 11.24 83.58 0.94 2.20 16 4 N -0.54 -19.59 9.77 -201.79 -1.97 -21.56 16 5 C 0.25 10.41 7.65 179.22 1.37 11.78 16 6 N -0.53 -23.17 3.02 -662.13 -2.00 -25.17 16 7 C 0.12 4.08 6.32 86.47 0.55 4.63 16 8 C -0.15 -4.75 6.20 30.75 0.19 -4.56 16 9 C 0.14 6.25 4.75 86.48 0.41 6.66 16 10 N -0.45 -23.63 2.96 -653.79 -1.94 -25.56 16 11 C -0.33 -18.56 9.16 84.01 0.77 -17.79 16 12 H 0.08 4.66 7.34 -2.91 -0.02 4.63 16 13 C 0.00 -0.01 5.08 84.90 0.43 0.43 16 14 N -0.90 -46.44 10.64 21.66 0.23 -46.21 16 15 Si 1.00 41.60 29.57 68.60 2.03 43.63 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.63 32.81 7.86 179.45 1.41 34.22 16 20 O -0.63 -35.28 12.99 -4.01 -0.05 -35.33 16 21 S 0.20 7.67 20.03 -56.49 -1.13 6.54 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.20 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.11 3.25 7.60 -2.39 -0.02 3.23 16 27 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.64 7.53 -2.39 -0.02 2.62 16 31 H 0.07 3.38 7.04 -2.39 -0.02 3.36 16 32 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -67.02 280.30 3.28 -63.74 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.14 Total: 11.28 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 6.97 Total: 28.64 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.68 Total: -118.50 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.05 Total: -35.33 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.13 Total: 6.54 kcal Total: -67.02 3.28 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.694 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds