Wall clock time and date at job start Mon Mar 30 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31242 * 124.05274 * 2 1 4 4 N 1.27332 * 120.03652 * 180.02562 * 3 2 1 5 5 S 1.56643 * 109.74217 * 359.69288 * 4 3 2 6 6 C 1.38246 * 124.05609 * 180.02562 * 2 1 3 7 7 C 1.47171 * 128.47439 * 359.97438 * 6 2 1 8 8 O 1.21623 * 120.00163 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99589 * 180.02562 * 7 6 2 10 10 C 1.47430 * 125.65241 * 359.97249 * 9 7 6 11 11 C 1.54902 * 104.83439 * 155.90855 * 10 9 7 12 12 C 1.55164 * 101.58322 * 37.00768 * 11 10 9 13 13 H 1.09001 * 110.71328 * 83.03809 * 12 11 10 14 14 C 1.50701 * 110.72171 * 206.13491 * 12 11 10 15 15 H 1.08003 * 119.99449 * 2.07494 * 14 12 11 16 16 C 1.37871 * 119.99683 * 182.07699 * 14 12 11 17 17 N 1.31508 * 120.00269 * 6.17664 * 16 14 12 18 18 Si 1.86807 * 119.99621 * 186.18062 * 16 14 12 19 19 H 1.48497 * 109.47153 * 84.98861 * 18 16 14 20 20 H 1.48496 * 109.46935 * 324.98771 * 18 16 14 21 21 H 1.48501 * 109.46973 * 204.98930 * 18 16 14 22 22 C 1.47324 * 125.61404 * 180.19891 * 9 7 6 23 23 H 1.09000 * 109.46892 * 269.97503 * 1 2 3 24 24 H 1.08994 * 109.47197 * 29.97683 * 1 2 3 25 25 H 1.09001 * 109.46406 * 149.97804 * 1 2 3 26 26 H 1.09003 * 110.36306 * 37.06547 * 10 9 7 27 27 H 1.09002 * 110.45698 * 274.79881 * 10 9 7 28 28 H 1.09002 * 111.00231 * 278.93957 * 11 10 9 29 29 H 1.08997 * 111.03738 * 155.10193 * 11 10 9 30 30 H 0.97003 * 119.99559 * 180.02562 * 17 16 14 31 31 H 1.08994 * 110.06581 * 61.67644 * 22 9 7 32 32 H 1.09000 * 109.84575 * 300.41499 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0874 0.0000 4 7 3.5122 0.9982 -0.0005 5 16 3.9367 -0.5096 0.0069 6 6 2.2813 -1.1454 -0.0005 7 6 1.8395 -2.5492 -0.0006 8 8 0.6522 -2.8131 0.0002 9 7 2.7506 -3.5423 -0.0006 10 6 4.2143 -3.3656 -0.0011 11 6 4.7720 -4.6751 0.6103 12 6 3.7978 -5.7317 0.0254 13 1 4.1013 -6.0206 -0.9809 14 6 3.7186 -6.9390 0.9238 15 1 4.2735 -6.9601 1.8501 16 6 2.9379 -8.0166 0.5631 17 7 2.3596 -8.0437 -0.6177 18 14 2.7014 -9.4381 1.7518 19 1 1.5882 -9.1245 2.6833 20 1 3.9507 -9.6486 2.5265 21 1 2.3773 -10.6713 0.9905 22 6 2.4480 -4.9841 -0.0049 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5134 25 1 -0.3632 -0.8898 -0.5142 26 1 4.4933 -2.5105 0.6145 27 1 4.5820 -3.2354 -1.0190 28 1 4.7164 -4.6527 1.6987 29 1 5.7934 -4.8585 0.2770 30 1 1.8100 -8.8017 -0.8713 31 1 1.8982 -5.2482 -0.9082 32 1 1.8617 -5.2418 0.8771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999278.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:13 Heat of formation + Delta-G solvation = 34.542855 kcal Electronic energy + Delta-G solvation = -17961.944095 eV Core-core repulsion = 15050.117739 eV Total energy + Delta-G solvation = -2911.826356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89099 -39.43459 -36.93046 -33.33003 -33.07619 -30.95767 -28.76786 -28.03979 -26.91646 -25.07744 -23.10248 -21.80308 -19.88660 -19.00087 -18.52662 -16.90878 -16.61850 -16.08678 -15.55004 -15.10495 -14.55569 -14.22778 -13.82831 -13.15435 -13.04494 -12.77335 -12.68043 -12.56979 -12.16862 -11.93025 -11.61147 -11.51857 -11.06434 -10.76340 -10.68994 -10.25900 -9.98114 -9.83224 -9.78018 -9.68634 -9.37052 -9.23990 -8.59800 -8.14893 -6.21292 -4.25505 -0.22768 0.83147 1.49893 1.96868 3.19345 3.20941 3.26031 3.31036 3.32511 3.90306 4.31069 4.57810 4.62821 5.11542 5.11965 5.29885 5.44997 5.56846 5.59253 5.68699 5.99027 6.14279 6.27249 6.54172 6.62891 6.71773 6.75699 7.23195 7.55269 7.64701 7.75506 7.87085 8.15423 8.33011 8.78042 9.40908 10.88733 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.035512 B = 0.005039 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.281257 B = 5555.195564 C = 6089.882799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.089 3.911 3 N -0.253 5.253 4 N -0.281 5.281 5 S 0.422 5.578 6 C -0.276 4.276 7 C 0.601 3.399 8 O -0.525 6.525 9 N -0.602 5.602 10 C 0.087 3.913 11 C -0.123 4.123 12 C 0.045 3.955 13 H 0.050 0.950 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.122 3.878 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 11.978 0.405 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 N -0.120 5.120 4 N -0.261 5.261 5 S 0.559 5.441 6 C -0.417 4.417 7 C 0.386 3.614 8 O -0.403 6.403 9 N -0.334 5.334 10 C -0.038 4.038 11 C -0.162 4.162 12 C 0.025 3.975 13 H 0.068 0.932 14 C -0.559 4.559 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.212 1.212 22 C 0.002 3.998 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.496 12.931 0.280 13.398 hybrid contribution -1.404 -1.308 0.574 2.003 sum 2.092 11.622 0.854 11.840 Atomic orbital electron populations 1.20493 0.83904 1.04809 1.04219 1.22928 1.00167 0.85305 0.97393 1.70684 0.97210 1.28158 1.15901 1.78652 1.09362 1.18399 1.19652 1.82898 1.10316 0.99322 1.51587 1.27946 0.97642 1.00416 1.15663 1.16111 0.85472 0.81268 0.78560 1.90788 1.15390 1.82670 1.51459 1.48887 1.06184 1.08534 1.69812 1.22644 0.80782 0.99576 1.00758 1.22870 0.99808 0.92924 1.00570 1.19779 0.88040 0.91691 0.97950 0.93223 1.20963 1.29126 0.99634 1.06167 0.91950 1.25029 0.95429 0.98241 0.94981 1.69935 1.31885 1.31483 1.18842 0.86577 0.78743 0.81505 0.81057 1.20398 1.19804 1.21167 1.22766 1.01661 0.73531 1.01825 0.89532 0.90166 0.88001 0.92320 0.90905 0.91171 0.90757 0.92529 0.91624 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 9.90 36.01 0.36 -0.55 16 2 C 0.09 1.30 7.00 -82.84 -0.58 0.72 16 3 N -0.25 -3.82 11.54 33.42 0.39 -3.44 16 4 N -0.28 -4.06 12.51 60.35 0.75 -3.31 16 5 S 0.42 5.27 19.60 -107.50 -2.11 3.17 16 6 C -0.28 -4.24 6.65 -35.95 -0.24 -4.48 16 7 C 0.60 11.04 7.84 -12.63 -0.10 10.94 16 8 O -0.52 -10.97 15.22 5.26 0.08 -10.89 16 9 N -0.60 -11.14 3.33 -171.64 -0.57 -11.71 16 10 C 0.09 1.31 5.76 -2.53 -0.01 1.29 16 11 C -0.12 -2.10 6.51 -24.58 -0.16 -2.26 16 12 C 0.04 0.98 2.70 -89.93 -0.24 0.74 16 13 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.52 -12.96 8.34 -34.44 -0.29 -13.25 16 15 H 0.06 1.52 7.76 -52.48 -0.41 1.11 16 16 C 0.07 1.73 5.33 -17.82 -0.10 1.63 16 17 N -0.88 -23.95 13.03 55.43 0.72 -23.23 16 18 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.12 2.70 6.08 -2.90 -0.02 2.68 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.10 1.38 6.47 -51.93 -0.34 1.04 16 26 H 0.06 0.74 5.15 -33.70 -0.17 0.57 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.07 1.61 7.81 -51.93 -0.41 1.21 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -28.50 284.57 -6.26 -34.76 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.41 Total: -2.18 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.38 Total: -2.53 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.29 Total: -41.69 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -2.11 Total: 3.17 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.50 -6.26 -34.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999278.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.303 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds