Wall clock time and date at job start Mon Mar 30 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31242 * 124.05274 * 2 1 4 4 N 1.27332 * 120.03652 * 180.02562 * 3 2 1 5 5 S 1.56643 * 109.74217 * 359.69288 * 4 3 2 6 6 C 1.38246 * 124.05609 * 180.02562 * 2 1 3 7 7 C 1.47171 * 128.47439 * 359.97438 * 6 2 1 8 8 O 1.21623 * 120.00163 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99589 * 180.02562 * 7 6 2 10 10 C 1.47430 * 125.65241 * 359.97249 * 9 7 6 11 11 C 1.54902 * 104.83439 * 155.90855 * 10 9 7 12 12 C 1.55164 * 101.58322 * 37.00768 * 11 10 9 13 13 H 1.09001 * 110.71328 * 83.03809 * 12 11 10 14 14 C 1.50701 * 110.72171 * 206.13491 * 12 11 10 15 15 H 1.08003 * 119.99449 * 2.07494 * 14 12 11 16 16 C 1.37871 * 119.99683 * 182.07699 * 14 12 11 17 17 N 1.31508 * 120.00269 * 6.17664 * 16 14 12 18 18 Si 1.86807 * 119.99621 * 186.18062 * 16 14 12 19 19 H 1.48497 * 109.47153 * 84.98861 * 18 16 14 20 20 H 1.48496 * 109.46935 * 324.98771 * 18 16 14 21 21 H 1.48501 * 109.46973 * 204.98930 * 18 16 14 22 22 C 1.47324 * 125.61404 * 180.19891 * 9 7 6 23 23 H 1.09000 * 109.46892 * 269.97503 * 1 2 3 24 24 H 1.08994 * 109.47197 * 29.97683 * 1 2 3 25 25 H 1.09001 * 109.46406 * 149.97804 * 1 2 3 26 26 H 1.09003 * 110.36306 * 37.06547 * 10 9 7 27 27 H 1.09002 * 110.45698 * 274.79881 * 10 9 7 28 28 H 1.09002 * 111.00231 * 278.93957 * 11 10 9 29 29 H 1.08997 * 111.03738 * 155.10193 * 11 10 9 30 30 H 0.97003 * 119.99559 * 180.02562 * 17 16 14 31 31 H 1.08994 * 110.06581 * 61.67644 * 22 9 7 32 32 H 1.09000 * 109.84575 * 300.41499 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0874 0.0000 4 7 3.5122 0.9982 -0.0005 5 16 3.9367 -0.5096 0.0069 6 6 2.2813 -1.1454 -0.0005 7 6 1.8395 -2.5492 -0.0006 8 8 0.6522 -2.8131 0.0002 9 7 2.7506 -3.5423 -0.0006 10 6 4.2143 -3.3656 -0.0011 11 6 4.7720 -4.6751 0.6103 12 6 3.7978 -5.7317 0.0254 13 1 4.1013 -6.0206 -0.9809 14 6 3.7186 -6.9390 0.9238 15 1 4.2735 -6.9601 1.8501 16 6 2.9379 -8.0166 0.5631 17 7 2.3596 -8.0437 -0.6177 18 14 2.7014 -9.4381 1.7518 19 1 1.5882 -9.1245 2.6833 20 1 3.9507 -9.6486 2.5265 21 1 2.3773 -10.6713 0.9905 22 6 2.4480 -4.9841 -0.0049 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5134 25 1 -0.3632 -0.8898 -0.5142 26 1 4.4933 -2.5105 0.6145 27 1 4.5820 -3.2354 -1.0190 28 1 4.7164 -4.6527 1.6987 29 1 5.7934 -4.8585 0.2770 30 1 1.8100 -8.8017 -0.8713 31 1 1.8982 -5.2482 -0.9082 32 1 1.8617 -5.2418 0.8771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999278.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:13 Heat of formation + Delta-G solvation = 15.986419 kcal Electronic energy + Delta-G solvation = -17962.748763 eV Core-core repulsion = 15050.117739 eV Total energy + Delta-G solvation = -2912.631023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04342 -40.89632 -38.46551 -35.03389 -34.33865 -32.57830 -30.16691 -29.43422 -28.02182 -26.83922 -24.58269 -23.06822 -21.53710 -20.35838 -19.66590 -18.53844 -18.14865 -17.38995 -16.99929 -16.56434 -16.35442 -15.40011 -15.25295 -14.48088 -14.36263 -14.11128 -14.09814 -13.85086 -13.62380 -13.33966 -13.21269 -12.85375 -12.59071 -12.47678 -12.40852 -11.78455 -11.39240 -11.31307 -11.09123 -10.94781 -10.84264 -10.76506 -10.56134 -9.70320 -8.18350 -6.27099 -1.38398 -0.28086 0.39034 0.80927 1.43534 1.46682 1.54129 1.79737 1.82423 2.43508 2.78762 3.15124 3.32344 3.50591 3.79575 4.17117 4.22127 4.34569 4.51073 4.60048 4.64765 4.75107 4.88572 5.03870 5.14527 5.17215 5.22762 5.50667 5.69382 5.85638 6.27166 6.39124 6.55762 6.81842 6.89497 7.42414 8.91469 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.035512 B = 0.005039 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.281257 B = 5555.195564 C = 6089.882799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.096 3.904 3 N -0.270 5.270 4 N -0.294 5.294 5 S 0.510 5.490 6 C -0.312 4.312 7 C 0.602 3.398 8 O -0.560 6.560 9 N -0.608 5.608 10 C 0.088 3.912 11 C -0.113 4.113 12 C 0.036 3.964 13 H 0.028 0.972 14 C -0.529 4.529 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.919 5.919 18 Si 0.950 3.050 19 H -0.281 1.281 20 H -0.261 1.261 21 H -0.287 1.287 22 C 0.141 3.859 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 13.436 1.172 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 N -0.135 5.135 4 N -0.274 5.274 5 S 0.648 5.352 6 C -0.452 4.452 7 C 0.389 3.611 8 O -0.441 6.441 9 N -0.340 5.340 10 C -0.036 4.036 11 C -0.151 4.151 12 C 0.017 3.983 13 H 0.046 0.954 14 C -0.567 4.567 15 H 0.085 0.915 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.185 1.185 21 H -0.213 1.213 22 C 0.019 3.981 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.322 14.417 1.058 15.404 hybrid contribution -1.893 -1.707 0.329 2.570 sum 3.430 12.710 1.387 13.237 Atomic orbital electron populations 1.20553 0.82868 1.05052 1.04968 1.23227 1.01065 0.84998 0.95907 1.70768 0.97317 1.28191 1.17205 1.78467 1.09466 1.19953 1.19506 1.82443 1.07078 0.97110 1.48611 1.27598 1.00299 0.98748 1.18540 1.16409 0.84924 0.82329 0.77451 1.90762 1.16975 1.83600 1.52772 1.48838 1.07949 1.07020 1.70177 1.22856 0.78318 0.99669 1.02725 1.22803 1.00008 0.91769 1.00548 1.19705 0.89448 0.92453 0.96732 0.95397 1.21388 1.28342 1.00484 1.06463 0.91528 1.25771 0.95526 1.00802 0.96222 1.70056 1.33012 1.32144 1.20521 0.85677 0.78831 0.78710 0.79145 1.20657 1.18526 1.21324 1.22191 1.01010 0.76208 0.98721 0.88457 0.87956 0.89611 0.89390 0.88442 0.91024 0.87963 0.92869 0.94890 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 9.90 71.24 0.71 -1.05 16 2 C 0.10 2.65 7.00 42.65 0.30 2.95 16 3 N -0.27 -7.52 11.54 -48.17 -0.56 -8.08 16 4 N -0.29 -7.60 12.51 37.02 0.46 -7.14 16 5 S 0.51 10.97 19.60 -56.49 -1.11 9.86 16 6 C -0.31 -9.04 6.65 24.62 0.16 -8.87 16 7 C 0.60 21.96 7.84 86.59 0.68 22.64 16 8 O -0.56 -24.07 15.22 -4.10 -0.06 -24.13 16 9 N -0.61 -22.21 3.33 -815.19 -2.72 -24.93 16 10 C 0.09 2.38 5.76 86.85 0.50 2.88 16 11 C -0.11 -3.58 6.51 31.99 0.21 -3.37 16 12 C 0.04 1.59 2.70 -10.35 -0.03 1.56 16 13 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.53 -26.41 8.34 25.60 0.21 -26.19 16 15 H 0.07 3.20 7.76 -2.91 -0.02 3.17 16 16 C 0.02 0.88 5.33 84.65 0.45 1.33 16 17 N -0.92 -51.31 13.03 21.44 0.28 -51.03 16 18 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.14 6.41 6.08 86.67 0.53 6.94 16 23 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.34 6.47 -2.39 -0.02 2.32 16 26 H 0.09 1.86 5.15 -13.98 -0.07 1.79 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.83 7.81 -2.39 -0.02 1.81 16 Total: -1.00 -63.21 284.57 3.13 -60.08 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.09 Total: 3.00 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 3.72 Total: -1.19 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.53 Total: -91.18 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.13 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 10.97 SS G_CDS: -1.11 Total: 9.86 kcal Total: -63.21 3.13 -60.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999278.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.064 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds