Wall clock time and date at job start Mon Mar 30 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31057 * 1 3 3 Si 1.86807 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46995 * 270.00162 * 3 2 1 5 5 H 1.48494 * 109.47069 * 29.99960 * 3 2 1 6 6 H 1.48499 * 109.46890 * 150.00215 * 3 2 1 7 7 C 1.39671 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99972 * 198.61164 * 7 2 1 9 9 C 1.41346 * 120.00513 * 18.61947 * 7 2 1 10 10 C 1.48150 * 127.10062 * 24.33546 * 9 7 2 11 11 C 1.33027 * 106.77266 * 180.02562 * 10 9 7 12 12 N 1.38415 * 108.88014 * 359.74052 * 11 10 9 13 13 H 0.96998 * 124.65327 * 180.32778 * 12 11 10 14 14 C 1.34354 * 110.69602 * 0.42599 * 12 11 10 15 15 C 1.50695 * 126.07230 * 179.82728 * 14 12 11 16 16 C 1.53002 * 117.49895 * 8.34944 * 15 14 12 17 17 C 1.53000 * 60.00140 * 252.50650 * 16 15 14 18 18 C 1.52531 * 115.86248 * 179.97438 * 11 10 9 19 19 S 1.83222 * 103.53575 * 17.62363 * 18 11 10 20 20 O 1.42101 * 109.89610 * 89.31492 * 19 18 11 21 21 O 1.42096 * 109.89582 * 223.86869 * 19 18 11 22 22 C 1.52134 * 136.77789 * 0.03237 * 10 9 7 23 23 H 0.96995 * 119.99883 * 0.02562 * 1 2 3 24 24 H 1.09006 * 115.55186 * 154.05327 * 15 14 12 25 25 H 1.09004 * 117.49592 * 359.97438 * 16 15 14 26 26 H 1.08999 * 117.50236 * 145.01652 * 16 15 14 27 27 H 1.09003 * 117.50029 * 252.51276 * 17 16 15 28 28 H 1.08996 * 117.49937 * 107.48169 * 17 16 15 29 29 H 1.09004 * 110.60497 * 136.12962 * 18 11 10 30 30 H 1.08989 * 110.61349 * 258.95185 * 18 11 10 31 31 H 1.09005 * 110.63109 * 43.96687 * 22 10 9 32 32 H 1.08999 * 110.77365 * 280.99031 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4920 2.0465 -1.4001 5 1 1.4420 2.6527 0.7000 6 1 3.5421 1.4402 0.7000 7 6 2.0089 -1.2096 -0.0005 8 1 3.0466 -1.2342 0.2980 9 6 1.3578 -2.4015 -0.3919 10 6 0.1727 -2.5248 -1.2724 11 6 -0.0998 -3.8232 -1.3697 12 7 0.8254 -4.5322 -0.6231 13 1 0.8416 -5.4984 -0.5382 14 6 1.6965 -3.6986 -0.0305 15 6 2.8415 -4.1002 0.8631 16 6 3.1627 -5.5922 0.9722 17 6 2.5031 -4.8639 2.1450 18 6 -1.2984 -4.1881 -2.2396 19 16 -1.5725 -2.6817 -3.2458 20 8 -0.8075 -2.7528 -4.4412 21 8 -2.9604 -2.3820 -3.2996 22 6 -0.7423 -1.5811 -2.0383 23 1 -0.4850 0.8400 -0.0004 24 1 3.6771 -3.4012 0.8994 25 1 2.5455 -6.2832 0.3979 26 1 4.2098 -5.8750 1.0802 27 1 3.1162 -4.6675 3.0245 28 1 1.4521 -5.0757 2.3419 29 1 -1.0634 -5.0391 -2.8790 30 1 -2.1698 -4.4033 -1.6214 31 1 -0.1609 -0.8159 -2.5528 32 1 -1.4719 -1.1233 -1.3705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:44 Heat of formation + Delta-G solvation = 6.284646 kcal Electronic energy + Delta-G solvation = -18383.818258 eV Core-core repulsion = 15438.473783 eV Total energy + Delta-G solvation = -2945.344475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85275 -36.54990 -36.29219 -35.49840 -33.53748 -32.42035 -29.85294 -27.98332 -24.96014 -24.87932 -21.92542 -21.10630 -19.33206 -18.50485 -18.04222 -16.88980 -15.94464 -15.65455 -15.42610 -14.94391 -14.88245 -14.49246 -13.68216 -13.36175 -12.65147 -12.63494 -12.12621 -11.99290 -11.63459 -11.56912 -11.52357 -11.33205 -11.15866 -11.12288 -10.95291 -10.68815 -10.25456 -10.04662 -9.94364 -9.79350 -9.39275 -9.00505 -7.27563 -6.89334 -6.53609 -4.05654 0.68687 2.91617 3.00973 3.18604 3.21072 3.21301 3.97376 4.03282 4.11521 4.27837 4.54215 4.61577 5.20523 5.25835 5.30402 5.44286 5.50766 5.71729 5.80025 5.92549 5.93008 6.14994 6.23773 6.40785 6.47936 6.66548 6.81773 7.14964 7.24801 7.39879 7.82078 8.21202 8.61632 8.71177 9.05066 9.11887 10.45621 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.010177 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.698574 B = 2750.568374 C = 4475.854732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.451 4.451 8 H 0.074 0.926 9 C 0.097 3.903 10 C -0.154 4.154 11 C -0.016 4.016 12 N -0.548 5.548 13 H 0.388 0.612 14 C -0.092 4.092 15 C -0.023 4.023 16 C -0.201 4.201 17 C -0.187 4.187 18 C -0.505 4.505 19 S 2.367 3.633 20 O -0.947 6.947 21 O -0.953 6.953 22 C -0.437 4.437 23 H 0.273 0.727 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -5.899 0.027 5.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.167 4.167 11 C -0.128 4.128 12 N -0.147 5.147 13 H 0.222 0.778 14 C -0.200 4.200 15 C -0.042 4.042 16 C -0.238 4.238 17 C -0.224 4.224 18 C -0.633 4.633 19 S 2.553 3.447 20 O -0.944 6.944 21 O -0.950 6.950 22 C -0.570 4.570 23 H 0.083 0.917 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.416 -5.726 -0.887 5.809 hybrid contribution 0.650 0.045 0.898 1.110 sum 0.234 -5.681 0.012 5.686 Atomic orbital electron populations 1.69909 1.07170 1.28117 1.38730 1.25588 0.94558 1.00270 0.93148 0.86495 0.80490 0.81711 0.78992 1.19713 1.20786 1.19040 1.18637 0.97635 0.90488 1.41574 0.90789 1.17706 0.90796 0.90242 0.92322 1.19847 1.02042 0.88613 1.06166 1.19039 0.95945 0.91737 1.06031 1.40365 1.25033 1.06827 1.42486 0.77835 1.18885 1.00570 0.89407 1.11096 1.19978 0.96766 0.92028 0.95419 1.22909 1.00691 0.96652 1.03563 1.22988 1.00800 1.05922 0.92706 1.29137 1.02719 1.20641 1.10835 1.09811 0.75861 0.80561 0.78472 1.93567 1.72114 1.85256 1.43420 1.93561 1.31039 1.82313 1.88110 1.28615 1.09040 1.08758 1.10630 0.91652 0.86906 0.90176 0.89314 0.89388 0.89506 0.86278 0.85250 0.86165 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.97 9.82 55.53 0.55 -19.42 16 2 C 0.08 1.92 5.32 -17.35 -0.09 1.83 16 3 Si 0.90 18.71 29.60 -169.99 -5.03 13.68 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.45 -11.43 9.10 -37.87 -0.34 -11.78 16 8 H 0.07 1.82 7.67 -52.48 -0.40 1.42 16 9 C 0.10 2.39 5.86 -104.42 -0.61 1.78 16 10 C -0.15 -3.51 5.98 -101.65 -0.61 -4.12 16 11 C -0.02 -0.32 7.65 -80.51 -0.62 -0.93 16 12 N -0.55 -10.65 5.85 -4.33 -0.03 -10.68 16 13 H 0.39 6.26 7.84 -40.82 -0.32 5.94 16 14 C -0.09 -2.00 6.78 -81.27 -0.55 -2.55 16 15 C -0.02 -0.42 6.02 -91.77 -0.55 -0.97 16 16 C -0.20 -2.95 10.13 -26.73 -0.27 -3.23 16 17 C -0.19 -2.95 10.23 -26.73 -0.27 -3.22 16 18 C -0.51 -7.99 7.37 36.92 0.27 -7.72 16 19 S 2.37 41.41 6.29 -107.50 -0.68 40.74 16 20 O -0.95 -19.16 18.16 -57.66 -1.05 -20.20 16 21 O -0.95 -18.30 18.16 -57.66 -1.05 -19.35 16 22 C -0.44 -8.85 5.62 36.72 0.21 -8.64 16 23 H 0.27 6.24 8.30 -40.82 -0.34 5.90 16 24 H 0.11 2.08 7.90 -51.93 -0.41 1.67 16 25 H 0.08 1.12 7.09 -51.93 -0.37 0.75 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.13 1.78 8.14 -51.94 -0.42 1.36 16 31 H 0.12 2.45 8.14 -51.93 -0.42 2.03 16 32 H 0.15 2.96 7.11 -51.93 -0.37 2.60 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.97 284.05 -9.98 -40.95 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.54 Total: 9.55 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: -3.44 Total: -39.55 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.52 Total: -30.10 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.09 Total: -39.55 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 41.41 SS G_CDS: -0.68 Total: 40.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.97 -9.98 -40.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.236 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds