Wall clock time and date at job start Mon Mar 30 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31057 * 1 3 3 Si 1.86807 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46995 * 270.00162 * 3 2 1 5 5 H 1.48494 * 109.47069 * 29.99960 * 3 2 1 6 6 H 1.48499 * 109.46890 * 150.00215 * 3 2 1 7 7 C 1.39671 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99972 * 198.61164 * 7 2 1 9 9 C 1.41346 * 120.00513 * 18.61947 * 7 2 1 10 10 C 1.48150 * 127.10062 * 24.33546 * 9 7 2 11 11 C 1.33027 * 106.77266 * 180.02562 * 10 9 7 12 12 N 1.38415 * 108.88014 * 359.74052 * 11 10 9 13 13 H 0.96998 * 124.65327 * 180.32778 * 12 11 10 14 14 C 1.34354 * 110.69602 * 0.42599 * 12 11 10 15 15 C 1.50695 * 126.07230 * 179.82728 * 14 12 11 16 16 C 1.53002 * 117.49895 * 8.34944 * 15 14 12 17 17 C 1.53000 * 60.00140 * 252.50650 * 16 15 14 18 18 C 1.52531 * 115.86248 * 179.97438 * 11 10 9 19 19 S 1.83222 * 103.53575 * 17.62363 * 18 11 10 20 20 O 1.42101 * 109.89610 * 89.31492 * 19 18 11 21 21 O 1.42096 * 109.89582 * 223.86869 * 19 18 11 22 22 C 1.52134 * 136.77789 * 0.03237 * 10 9 7 23 23 H 0.96995 * 119.99883 * 0.02562 * 1 2 3 24 24 H 1.09006 * 115.55186 * 154.05327 * 15 14 12 25 25 H 1.09004 * 117.49592 * 359.97438 * 16 15 14 26 26 H 1.08999 * 117.50236 * 145.01652 * 16 15 14 27 27 H 1.09003 * 117.50029 * 252.51276 * 17 16 15 28 28 H 1.08996 * 117.49937 * 107.48169 * 17 16 15 29 29 H 1.09004 * 110.60497 * 136.12962 * 18 11 10 30 30 H 1.08989 * 110.61349 * 258.95185 * 18 11 10 31 31 H 1.09005 * 110.63109 * 43.96687 * 22 10 9 32 32 H 1.08999 * 110.77365 * 280.99031 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4920 2.0465 -1.4001 5 1 1.4420 2.6527 0.7000 6 1 3.5421 1.4402 0.7000 7 6 2.0089 -1.2096 -0.0005 8 1 3.0466 -1.2342 0.2980 9 6 1.3578 -2.4015 -0.3919 10 6 0.1727 -2.5248 -1.2724 11 6 -0.0998 -3.8232 -1.3697 12 7 0.8254 -4.5322 -0.6231 13 1 0.8416 -5.4984 -0.5382 14 6 1.6965 -3.6986 -0.0305 15 6 2.8415 -4.1002 0.8631 16 6 3.1627 -5.5922 0.9722 17 6 2.5031 -4.8639 2.1450 18 6 -1.2984 -4.1881 -2.2396 19 16 -1.5725 -2.6817 -3.2458 20 8 -0.8075 -2.7528 -4.4412 21 8 -2.9604 -2.3820 -3.2996 22 6 -0.7423 -1.5811 -2.0383 23 1 -0.4850 0.8400 -0.0004 24 1 3.6771 -3.4012 0.8994 25 1 2.5455 -6.2832 0.3979 26 1 4.2098 -5.8750 1.0802 27 1 3.1162 -4.6675 3.0245 28 1 1.4521 -5.0757 2.3419 29 1 -1.0634 -5.0391 -2.8790 30 1 -2.1698 -4.4033 -1.6214 31 1 -0.1609 -0.8159 -2.5528 32 1 -1.4719 -1.1233 -1.3705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:44 Heat of formation + Delta-G solvation = -14.851230 kcal Electronic energy + Delta-G solvation = -18384.734779 eV Core-core repulsion = 15438.473783 eV Total energy + Delta-G solvation = -2946.260995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44867 -38.07888 -37.65929 -37.04502 -35.29949 -33.94186 -31.51400 -29.51884 -26.62808 -26.46371 -23.13715 -22.59215 -21.02312 -20.00804 -19.58936 -18.47543 -17.53576 -17.13357 -16.95554 -16.58065 -16.40251 -15.88840 -15.18334 -14.80039 -14.30274 -14.10648 -13.74718 -13.52530 -13.19869 -13.15113 -13.10029 -12.91649 -12.75463 -12.53508 -12.34543 -12.29182 -11.88620 -11.58119 -11.30999 -11.26843 -10.94017 -10.77654 -8.97299 -8.53516 -8.30420 -5.87425 -0.77441 1.34310 1.43683 1.46153 1.53454 1.63836 2.26458 2.36043 2.56951 2.80644 3.15031 3.20023 3.54704 3.82673 3.96651 4.12151 4.24758 4.36152 4.38100 4.58591 4.63592 4.73115 4.83951 5.07700 5.17339 5.28075 5.30373 5.47626 5.57678 5.67443 6.14003 6.46311 6.83008 7.11758 7.30374 7.38967 8.68414 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.010177 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.698574 B = 2750.568374 C = 4475.854732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.039 3.961 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.482 4.482 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.191 4.191 11 C -0.017 4.017 12 N -0.537 5.537 13 H 0.408 0.592 14 C -0.080 4.080 15 C -0.065 4.065 16 C -0.168 4.168 17 C -0.177 4.177 18 C -0.483 4.483 19 S 2.413 3.587 20 O -0.971 6.971 21 O -0.965 6.965 22 C -0.452 4.452 23 H 0.275 0.725 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.103 0.897 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -8.377 0.039 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.081 0.919 9 C 0.026 3.974 10 C -0.203 4.203 11 C -0.129 4.129 12 N -0.136 5.136 13 H 0.244 0.756 14 C -0.189 4.189 15 C -0.084 4.084 16 C -0.205 4.205 17 C -0.214 4.214 18 C -0.613 4.613 19 S 2.600 3.400 20 O -0.968 6.968 21 O -0.962 6.962 22 C -0.583 4.583 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.176 0.824 30 H 0.180 0.820 31 H 0.121 0.879 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.613 -8.197 -0.873 8.266 hybrid contribution 0.733 0.642 0.924 1.343 sum 0.120 -7.554 0.050 7.555 Atomic orbital electron populations 1.69977 1.07929 1.28612 1.40058 1.26180 0.95326 1.02580 0.93113 0.85620 0.79351 0.78487 0.78678 1.19853 1.20241 1.18917 1.18781 0.97418 0.91977 1.43359 0.91904 1.18202 0.93092 0.91471 0.94641 1.20183 1.02430 0.90609 1.07035 1.19490 0.96681 0.91078 1.05686 1.40359 1.24138 1.07720 1.41408 0.75574 1.19317 1.00633 0.89076 1.09894 1.20005 0.96174 0.94716 0.97535 1.23021 1.02298 0.93549 1.01612 1.23018 1.01093 1.04584 0.92741 1.29051 1.02038 1.19910 1.10335 1.08377 0.74405 0.80242 0.77023 1.93533 1.72726 1.85824 1.44695 1.93543 1.31447 1.83054 1.88148 1.28667 1.08786 1.09404 1.11453 0.91534 0.88096 0.88843 0.86873 0.87659 0.90031 0.82386 0.82016 0.87853 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.15 9.82 21.79 0.21 -42.93 16 2 C 0.04 2.00 5.32 85.15 0.45 2.45 16 3 Si 0.95 40.08 29.60 68.60 2.03 42.11 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.48 -25.77 9.10 23.38 0.21 -25.56 16 8 H 0.06 3.31 7.67 -2.91 -0.02 3.29 16 9 C 0.03 1.69 5.86 -19.74 -0.12 1.58 16 10 C -0.19 -8.82 5.98 -17.93 -0.11 -8.93 16 11 C -0.02 -0.64 7.65 40.95 0.31 -0.33 16 12 N -0.54 -19.76 5.85 -167.60 -0.98 -20.74 16 13 H 0.41 11.70 7.84 -92.71 -0.73 10.98 16 14 C -0.08 -3.45 6.78 42.31 0.29 -3.17 16 15 C -0.07 -2.34 6.02 -11.54 -0.07 -2.41 16 16 C -0.17 -4.37 10.13 30.59 0.31 -4.06 16 17 C -0.18 -5.19 10.23 30.60 0.31 -4.87 16 18 C -0.48 -13.45 7.37 71.83 0.53 -12.92 16 19 S 2.41 81.01 6.29 -56.49 -0.36 80.66 16 20 O -0.97 -38.08 18.16 -127.54 -2.32 -40.39 16 21 O -0.96 -35.37 18.16 -127.54 -2.32 -37.68 16 22 C -0.45 -18.85 5.62 71.70 0.40 -18.45 16 23 H 0.27 13.16 8.30 -92.71 -0.77 12.39 16 24 H 0.10 3.81 7.90 -2.38 -0.02 3.79 16 25 H 0.09 2.19 7.09 -2.38 -0.02 2.18 16 26 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.16 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.16 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.10 4.51 8.14 -2.38 -0.02 4.49 16 32 H 0.14 5.80 7.11 -2.39 -0.02 5.78 16 Total: -1.00 -68.90 284.05 -0.76 -69.66 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.43 Total: 25.99 kcal Atomic # 6 Polarization: -79.19 SS G_CDS: 2.53 Total: -76.66 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.77 Total: -63.67 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: -4.63 Total: -78.08 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 81.01 SS G_CDS: -0.36 Total: 80.66 kcal Total: -68.90 -0.76 -69.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.808 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds