Wall clock time and date at job start Mon Mar 30 2020 04:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38432 * 126.34503 * 2 1 4 4 C 1.47101 * 126.44621 * 0.02562 * 3 2 1 5 5 O 1.35150 * 126.58824 * 0.05170 * 4 3 2 6 6 C 1.35013 * 107.61045 * 179.97438 * 5 4 3 7 7 C 1.39300 * 125.50758 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00037 * 0.02562 * 7 6 5 9 9 C 1.40240 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.30708 * 119.99856 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00192 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47171 * 90.00291 * 11 9 7 13 13 H 1.48505 * 109.47323 * 210.00217 * 11 9 7 14 14 H 1.48500 * 109.47343 * 329.99887 * 11 9 7 15 15 N 1.33073 * 108.98021 * 359.97438 * 6 5 4 16 16 C 1.32604 * 108.98437 * 0.02562 * 15 6 5 17 17 Cl 1.73598 * 126.19732 * 179.97438 * 16 15 6 18 18 C 1.41431 * 107.10457 * 180.28708 * 3 2 1 19 19 N 1.30452 * 108.08572 * 359.55181 * 18 3 2 20 20 N 1.34591 * 126.33870 * 180.02562 * 2 1 3 21 21 C 1.46502 * 125.75785 * 359.95199 * 20 2 1 22 22 H 1.09003 * 109.47448 * 89.99699 * 1 2 3 23 23 H 1.08997 * 109.47698 * 209.99782 * 1 2 3 24 24 H 1.09000 * 109.47395 * 330.00161 * 1 2 3 25 25 H 0.96994 * 120.00200 * 180.02562 * 10 9 7 26 26 H 1.08000 * 125.95797 * 179.70391 * 18 3 2 27 27 H 1.08992 * 109.46788 * 90.00387 * 21 20 2 28 28 H 1.09001 * 109.46935 * 210.00355 * 21 20 2 29 29 H 1.09003 * 109.47148 * 330.00375 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3274 1.1150 0.0000 4 6 1.8922 2.5202 0.0005 5 8 0.6173 2.9686 0.0021 6 6 0.6589 4.3181 0.0026 7 6 -0.4495 5.1618 0.0036 8 1 -1.4457 4.7446 0.0045 9 6 -0.2719 6.5529 0.0036 10 7 0.9337 7.0578 0.0020 11 14 -1.7583 7.6843 0.0057 12 1 -2.1502 7.9840 1.4063 13 1 -1.4188 8.9490 -0.6947 14 1 -2.8875 7.0194 -0.6929 15 7 1.9301 4.7119 0.0020 16 6 2.7132 3.6418 0.0005 17 17 4.4491 3.6417 -0.0015 18 6 3.6627 0.6490 -0.0068 19 7 3.6364 -0.6553 -0.0008 20 7 2.3045 -1.0842 -0.0005 21 6 1.8541 -2.4782 -0.0001 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.0566 8.0199 0.0023 26 1 4.5495 1.2654 -0.0130 27 1 1.7418 -2.8240 -1.0276 28 1 2.5897 -3.0975 0.5133 29 1 0.8958 -2.5504 0.5143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077061.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:31 Heat of formation + Delta-G solvation = 56.095686 kcal Electronic energy + Delta-G solvation = -17574.322761 eV Core-core repulsion = 14525.554205 eV Total energy + Delta-G solvation = -3048.768556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.052 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.01089 -41.97206 -37.56624 -35.95045 -34.62601 -34.32015 -33.28114 -30.94933 -28.89998 -27.62461 -26.17500 -23.28627 -22.94658 -21.51354 -20.44663 -19.47709 -17.81001 -17.44208 -16.99280 -16.40514 -16.23895 -15.85737 -15.32371 -14.94049 -14.21305 -14.01541 -13.94164 -13.50629 -13.43602 -13.29567 -13.24850 -12.97076 -12.86987 -12.85069 -11.98734 -11.82806 -11.69380 -11.59567 -10.91818 -10.38575 -10.36563 -10.23751 -8.67183 -8.63468 -6.60094 0.40113 0.98444 1.08295 1.43883 1.46826 1.56580 1.62902 2.01924 2.16759 2.42741 2.70009 3.22550 3.56357 3.75491 4.07976 4.35577 4.38327 4.44557 4.63978 4.67157 4.70415 4.74877 4.95612 5.06442 5.12027 5.39327 5.56996 5.75243 6.03526 6.09538 6.42917 6.60651 6.66004 7.73135 8.31056 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.005993 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.731982 B = 4670.851234 C = 5729.136100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.084 3.916 3 C -0.163 4.163 4 C -0.089 4.089 5 O -0.232 6.232 6 C 0.308 3.692 7 C -0.446 4.446 8 H 0.113 0.887 9 C 0.028 3.972 10 N -0.761 5.761 11 Si 1.015 2.985 12 H -0.258 1.258 13 H -0.267 1.267 14 H -0.246 1.246 15 N -0.560 5.560 16 C 0.062 3.938 17 Cl -0.020 7.020 18 C 0.057 3.943 19 N -0.317 5.317 20 N -0.363 5.363 21 C 0.090 3.910 22 H 0.089 0.911 23 H 0.106 0.894 24 H 0.069 0.931 25 H 0.290 0.710 26 H 0.186 0.814 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -11.649 0.049 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C -0.175 4.175 4 C -0.147 4.147 5 O -0.129 6.129 6 C 0.127 3.873 7 C -0.480 4.480 8 H 0.131 0.869 9 C -0.195 4.195 10 N -0.385 5.385 11 Si 0.833 3.167 12 H -0.182 1.182 13 H -0.191 1.191 14 H -0.169 1.169 15 N -0.293 5.293 16 C -0.092 4.092 17 Cl 0.009 6.991 18 C -0.128 4.128 19 N -0.139 5.139 20 N -0.145 5.145 21 C -0.049 4.049 22 H 0.107 0.893 23 H 0.125 0.875 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.203 0.797 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.207 -12.083 0.049 12.283 hybrid contribution -0.310 0.843 -0.015 0.898 sum -2.516 -11.240 0.034 11.519 Atomic orbital electron populations 1.20483 0.84686 1.04560 1.04187 1.21822 0.95707 0.86155 1.00933 1.17790 0.93198 0.87564 1.18963 1.19944 0.80942 0.91727 1.22045 1.84537 1.27629 1.24132 1.76578 1.22383 0.93114 0.77046 0.94749 1.18705 0.91601 0.90361 1.47336 0.86892 1.27105 1.01153 0.99302 0.91930 1.70125 1.25078 1.15054 1.28270 0.84722 0.76013 0.76153 0.79858 1.18209 1.19115 1.16934 1.70960 1.00026 1.26998 1.31298 1.22547 0.86890 0.90961 1.08761 1.98212 1.05453 1.98157 1.97313 1.24041 0.97019 0.91705 1.00046 1.76943 0.97973 1.12411 1.26528 1.48430 1.02897 1.07304 1.55895 1.22310 1.02555 0.75002 1.05077 0.89270 0.87523 0.91179 0.89875 0.79709 0.89015 0.88185 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.75 71.24 0.69 -1.47 15 2 C 0.08 2.86 7.03 42.18 0.30 3.16 15 3 C -0.16 -6.91 6.13 -20.12 -0.12 -7.04 15 4 C -0.09 -4.48 7.22 24.78 0.18 -4.30 15 5 O -0.23 -12.22 9.20 -18.15 -0.17 -12.38 15 6 C 0.31 17.65 7.70 84.76 0.65 18.30 15 7 C -0.45 -23.54 9.43 23.01 0.22 -23.32 15 8 H 0.11 5.35 7.85 -2.91 -0.02 5.32 15 9 C 0.03 1.36 5.50 85.35 0.47 1.83 15 10 N -0.76 -40.88 11.85 21.88 0.26 -40.62 15 11 Si 1.02 35.70 29.56 68.60 2.03 37.73 15 12 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 13 H -0.27 -9.00 7.11 99.48 0.71 -8.29 15 14 H -0.25 -8.08 7.11 99.48 0.71 -7.38 15 15 N -0.56 -33.20 9.35 -298.41 -2.79 -35.99 15 16 C 0.06 3.30 7.82 84.76 0.66 3.96 15 17 Cl -0.02 -0.85 26.52 -2.72 -0.07 -0.92 15 18 C 0.06 2.20 11.33 85.68 0.97 3.17 15 19 N -0.32 -11.19 12.49 -56.18 -0.70 -11.89 15 20 N -0.36 -10.74 3.99 -353.74 -1.41 -12.15 15 21 C 0.09 1.45 11.25 127.77 1.44 2.89 15 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.11 1.88 7.07 -2.39 -0.02 1.86 15 24 H 0.07 2.27 6.75 -2.39 -0.02 2.26 15 25 H 0.29 13.91 8.29 -92.71 -0.77 13.14 15 26 H 0.19 6.88 5.86 -2.91 -0.02 6.87 15 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 15 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 29 H 0.11 1.19 7.03 -2.39 -0.02 1.18 15 Total: -1.00 -71.16 274.70 3.81 -67.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.20 Total: 11.71 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.46 Total: -2.83 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.64 Total: -100.65 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.17 Total: -12.38 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.92 kcal Total: -71.16 3.81 -67.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077061.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.448 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds