Wall clock time and date at job start Mon Mar 30 2020 04:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48506 * 109.47007 * 268.71389 * 3 2 1 5 5 H 1.48498 * 109.46983 * 28.71455 * 3 2 1 6 6 H 1.48504 * 109.46944 * 148.71638 * 3 2 1 7 7 C 1.37872 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 350.81334 * 7 2 1 9 9 C 1.50703 * 120.00349 * 170.81667 * 7 2 1 10 10 H 1.09001 * 109.67508 * 2.42047 * 9 7 2 11 11 C 1.53293 * 109.71343 * 122.95723 * 9 7 2 12 12 O 1.42964 * 109.22207 * 172.04213 * 11 9 7 13 13 C 1.42961 * 114.16721 * 297.42182 * 12 11 9 14 14 C 1.52871 * 109.30082 * 62.44910 * 13 12 11 15 15 N 1.47149 * 109.68067 * 241.90227 * 9 7 2 16 16 C 1.34781 * 120.98430 * 9.68443 * 15 9 7 17 17 O 1.21697 * 119.99675 * 4.90940 * 16 15 9 18 18 C 1.46582 * 120.00242 * 184.91788 * 16 15 9 19 19 C 1.36648 * 125.46127 * 138.63560 * 18 16 15 20 20 C 1.37471 * 113.29615 * 180.16368 * 19 18 16 21 21 C 1.33823 * 115.10061 * 359.51053 * 20 19 18 22 22 S 1.70612 * 110.95456 * 0.27263 * 21 20 19 23 23 H 0.96998 * 120.00026 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.51452 * 291.97299 * 11 9 7 25 25 H 1.09006 * 109.51290 * 52.06765 * 11 9 7 26 26 H 1.09003 * 109.50918 * 182.50439 * 13 12 11 27 27 H 1.08996 * 109.51127 * 302.60004 * 13 12 11 28 28 H 1.09000 * 109.62484 * 188.11719 * 14 13 12 29 29 H 1.08999 * 109.52751 * 67.69566 * 14 13 12 30 30 H 1.08000 * 123.34799 * 359.94327 * 19 18 16 31 31 H 1.07995 * 122.44611 * 179.78392 * 20 19 18 32 32 H 1.08001 * 124.51615 * 180.26885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5238 2.0308 -1.3998 5 1 1.4331 2.6604 0.6727 6 1 3.5328 1.4482 0.7270 7 6 2.0046 -1.1940 -0.0005 8 1 1.4750 -2.1233 0.1484 9 6 3.4971 -1.2022 -0.2088 10 1 3.8609 -0.1786 -0.2981 11 6 4.1809 -1.8915 0.9774 12 8 5.5706 -2.0599 0.6867 13 6 5.8354 -2.9009 -0.4386 14 6 5.2358 -2.2682 -1.6945 15 7 3.8226 -1.9524 -1.4321 16 6 2.8546 -2.3436 -2.2845 17 8 1.7023 -2.0011 -2.0950 18 6 3.1896 -3.1816 -3.4395 19 6 2.4550 -4.2424 -3.8890 20 6 3.0024 -4.8547 -4.9914 21 6 4.1402 -4.3093 -5.4372 22 16 4.5970 -2.9774 -4.4737 23 1 -0.4850 0.8400 -0.0004 24 1 4.0676 -1.2769 1.8704 25 1 3.7227 -2.8662 1.1457 26 1 6.9124 -3.0125 -0.5643 27 1 5.3846 -3.8798 -0.2756 28 1 5.3070 -2.9684 -2.5268 29 1 5.7775 -1.3538 -1.9359 30 1 1.5376 -4.5696 -3.4224 31 1 2.5452 -5.7105 -5.4657 32 1 4.6953 -4.6650 -6.2927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260089504.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:48 Heat of formation + Delta-G solvation = -40.615036 kcal Electronic energy + Delta-G solvation = -18746.770857 eV Core-core repulsion = 15799.392659 eV Total energy + Delta-G solvation = -2947.378198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18162 -39.27543 -38.16380 -35.66266 -34.93150 -32.67872 -30.72449 -29.01658 -26.93762 -25.86576 -24.10282 -23.18131 -21.11945 -19.93003 -19.51154 -18.66530 -17.32326 -17.04153 -16.72214 -16.36635 -16.18715 -16.01838 -15.47898 -15.40913 -14.60498 -14.41191 -14.25071 -13.73490 -13.64028 -13.27769 -13.05665 -12.89300 -12.76939 -12.32036 -11.89125 -11.84058 -11.74020 -11.48628 -11.13751 -11.03082 -10.20845 -9.77236 -9.34522 -9.24707 -8.23192 -6.10297 -0.30321 0.46774 1.00383 1.29078 1.29766 1.40046 1.59681 2.04243 2.32960 2.38422 2.96688 3.20057 3.72013 3.94896 4.16867 4.17482 4.20667 4.32399 4.42494 4.50136 4.58403 4.63609 4.76500 4.91677 5.01248 5.07126 5.24943 5.36374 5.43070 5.76140 6.13429 6.30587 6.63281 6.79793 7.34189 7.55044 8.95437 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.008352 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.886419 B = 3351.839957 C = 4082.441036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.019 3.981 3 Si 0.932 3.068 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.235 1.235 7 C -0.461 4.461 8 H 0.024 0.976 9 C 0.204 3.796 10 H 0.044 0.956 11 C 0.070 3.930 12 O -0.396 6.396 13 C 0.050 3.950 14 C 0.050 3.950 15 N -0.618 5.618 16 C 0.559 3.441 17 O -0.523 6.523 18 C -0.290 4.290 19 C -0.085 4.085 20 C -0.150 4.150 21 C -0.234 4.234 22 S 0.241 5.759 23 H 0.261 0.739 24 H 0.105 0.895 25 H 0.041 0.959 26 H 0.144 0.856 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.168 0.832 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 -8.369 -9.679 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.158 1.158 7 C -0.500 4.500 8 H 0.043 0.957 9 C 0.104 3.896 10 H 0.062 0.938 11 C -0.008 4.008 12 O -0.314 6.314 13 C -0.028 4.028 14 C -0.074 4.074 15 N -0.353 5.353 16 C 0.345 3.655 17 O -0.398 6.398 18 C -0.411 4.411 19 C -0.119 4.119 20 C -0.181 4.181 21 C -0.371 4.371 22 S 0.508 5.492 23 H 0.070 0.930 24 H 0.123 0.877 25 H 0.059 0.941 26 H 0.161 0.839 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.147 0.853 31 H 0.186 0.814 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 16.874 -6.985 -9.505 20.588 hybrid contribution -2.131 -0.400 -0.089 2.170 sum 14.744 -7.385 -9.593 19.077 Atomic orbital electron populations 1.70086 1.08252 1.27360 1.51744 1.25745 0.95390 1.02280 0.94567 0.85977 0.80074 0.79710 0.78578 1.20977 1.20579 1.15815 1.20530 0.90069 0.93262 1.46150 0.95739 1.19976 0.95060 0.92011 0.82597 0.93820 1.23041 0.80111 0.99751 0.97882 1.87857 1.24546 1.69951 1.49078 1.23047 1.02926 0.92513 0.84271 1.22984 0.81415 1.02505 1.00475 1.48837 1.06615 1.56312 1.23577 1.17787 0.85317 0.80216 0.82146 1.91089 1.21196 1.54923 1.72594 1.25051 1.05128 1.05760 1.05126 1.20890 0.99601 0.94412 0.96964 1.20134 0.97155 1.03689 0.97081 1.25860 1.02291 1.02096 1.06846 1.82778 1.19463 1.29094 1.17869 0.92991 0.87661 0.94113 0.83867 0.93188 0.87429 0.89696 0.85251 0.81416 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.87 13.96 21.45 0.30 -61.57 16 2 C 0.02 1.14 5.34 84.65 0.45 1.59 16 3 Si 0.93 45.96 27.06 68.60 1.86 47.81 16 4 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.23 -10.31 6.66 99.48 0.66 -9.65 16 7 C -0.46 -27.52 5.73 25.60 0.15 -27.37 16 8 H 0.02 1.68 7.67 -2.91 -0.02 1.66 16 9 C 0.20 9.83 3.03 44.22 0.13 9.96 16 10 H 0.04 2.12 4.73 -2.39 -0.01 2.11 16 11 C 0.07 2.84 6.27 72.08 0.45 3.29 16 12 O -0.40 -13.63 10.74 -148.98 -1.60 -15.23 16 13 C 0.05 1.33 6.97 71.94 0.50 1.83 16 14 C 0.05 1.48 5.99 86.21 0.52 1.99 16 15 N -0.62 -26.52 3.03 -803.25 -2.43 -28.95 16 16 C 0.56 26.48 7.43 86.42 0.64 27.12 16 17 O -0.52 -31.46 13.81 -4.34 -0.06 -31.52 16 18 C -0.29 -10.38 5.62 24.08 0.14 -10.25 16 19 C -0.09 -2.74 10.22 21.72 0.22 -2.52 16 20 C -0.15 -3.37 10.15 21.08 0.21 -3.15 16 21 C -0.23 -4.31 10.92 66.82 0.73 -3.58 16 22 S 0.24 5.62 19.65 -56.49 -1.11 4.51 16 23 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 24 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 25 H 0.04 1.71 8.13 -2.38 -0.02 1.69 16 26 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 2.69 3.96 -17.58 -0.07 2.62 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.21 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -81.00 276.34 2.14 -78.87 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.04 Total: 7.17 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 4.15 Total: -1.09 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -2.13 Total: -90.52 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.66 Total: -46.76 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.86 Total: 47.81 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.11 Total: 4.51 kcal Total: -81.00 2.14 -78.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089504.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.254 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds