Wall clock time and date at job start Mon Mar 30 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30242 * 121.09791 * 2 1 4 4 S 1.69969 * 105.62422 * 179.75869 * 3 2 1 5 5 C 1.72308 * 94.52122 * 0.34132 * 4 3 2 6 6 C 1.50704 * 127.48399 * 179.91691 * 5 4 3 7 7 C 1.50698 * 109.47142 * 269.68902 * 6 5 4 8 8 C 1.39585 * 128.15760 * 94.99617 * 7 6 5 9 9 C 1.40458 * 126.74302 * 0.02562 * 8 7 6 10 10 H 1.08000 * 119.99435 * 359.97438 * 9 8 7 11 11 C 1.40465 * 119.99909 * 179.71027 * 9 8 7 12 12 N 1.30506 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99650 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47093 * 60.00127 * 13 11 9 15 15 H 1.48495 * 109.47002 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47239 * 299.99847 * 13 11 9 17 17 O 1.34690 * 106.51338 * 179.74265 * 8 7 6 18 18 N 1.20828 * 112.07087 * 0.25980 * 17 8 7 19 19 H 0.97004 * 124.16500 * 180.02562 * 18 17 8 20 20 C 1.34704 * 111.66720 * 0.02562 * 18 17 8 21 21 O 1.22044 * 126.97242 * 180.02562 * 20 18 17 22 22 N 1.30924 * 105.03315 * 359.65874 * 5 4 3 23 23 H 1.08990 * 109.47017 * 269.97537 * 1 2 3 24 24 H 1.08996 * 109.46967 * 29.97975 * 1 2 3 25 25 H 1.09004 * 109.46714 * 149.97731 * 1 2 3 26 26 H 1.08999 * 109.47120 * 149.68459 * 6 5 4 27 27 H 1.09001 * 109.46606 * 29.68931 * 6 5 4 28 28 H 0.97000 * 120.00383 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1797 1.1152 0.0000 4 16 3.8178 0.6618 0.0069 5 6 3.4905 -1.0299 -0.0008 6 6 4.4903 -2.1575 -0.0014 7 6 4.8232 -2.5330 -1.4224 8 6 5.8916 -2.0899 -2.2038 9 6 6.8957 -1.1861 -1.8194 10 1 6.8872 -0.7596 -0.8272 11 6 7.9139 -0.8413 -2.7235 12 7 7.9273 -1.3611 -3.9205 13 14 9.2489 0.3612 -2.2124 14 1 9.9797 -0.1801 -1.0384 15 1 10.1972 0.5559 -3.3384 16 1 8.6315 1.6633 -1.8538 17 8 5.7740 -2.7041 -3.3967 18 7 4.8086 -3.4294 -3.4407 19 1 4.5580 -3.9562 -4.2157 20 6 4.1233 -3.4162 -2.2811 21 8 3.1090 -4.0429 -2.0208 22 7 2.1845 -1.1231 -0.0004 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.0657 -3.0199 0.5124 27 1 5.3974 -1.8389 0.5123 28 1 8.6302 -1.1227 -4.5450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260115222.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:38 Heat of formation + Delta-G solvation = 55.295740 kcal Electronic energy + Delta-G solvation = -17755.939251 eV Core-core repulsion = 14709.179713 eV Total energy + Delta-G solvation = -3046.759538 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.03757 -39.69328 -36.48911 -34.77261 -33.55044 -31.53765 -30.30474 -29.35751 -28.26451 -26.48014 -22.82762 -21.14313 -20.42813 -19.18428 -18.25752 -17.65273 -17.33570 -16.18176 -15.61660 -15.06558 -14.56730 -14.21816 -13.69316 -13.35616 -13.18106 -12.61040 -12.33922 -12.15664 -12.07914 -11.96278 -11.63651 -11.45887 -11.33467 -11.22018 -10.74808 -10.55607 -10.01729 -9.64238 -9.14720 -8.61726 -8.50023 -8.44358 -7.41627 -7.09395 -5.28376 1.00493 1.82322 2.23243 2.54883 2.79210 2.82438 3.08062 3.16228 3.50560 3.80773 4.16041 4.34862 4.72119 5.21851 5.42992 5.52490 5.66504 5.88775 5.95454 6.25286 6.39388 6.41974 6.47930 6.76242 6.92435 7.12288 7.53368 7.73455 7.94595 8.11352 8.18302 9.35290 9.53871 9.81809 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.007829 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.520451 B = 3575.636860 C = 4708.027277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.259 3.741 3 N -0.503 5.503 4 S 0.194 5.806 5 C 0.145 3.855 6 C 0.093 3.907 7 C -0.507 4.507 8 C 0.263 3.737 9 C -0.404 4.404 10 H 0.119 0.881 11 C 0.068 3.932 12 N -0.750 5.750 13 Si 0.928 3.072 14 H -0.255 1.255 15 H -0.272 1.272 16 H -0.254 1.254 17 O -0.012 6.012 18 N -0.596 5.596 19 H 0.434 0.566 20 C 0.503 3.497 21 O -0.591 6.591 22 N -0.518 5.518 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 3.833 3.368 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 N -0.334 5.334 4 S 0.336 5.664 5 C -0.142 4.142 6 C 0.051 3.949 7 C -0.517 4.517 8 C 0.208 3.792 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.158 4.158 12 N -0.373 5.373 13 Si 0.750 3.250 14 H -0.179 1.179 15 H -0.196 1.196 16 H -0.177 1.177 17 O -0.022 6.022 18 N -0.287 5.287 19 H 0.281 0.719 20 C 0.309 3.691 21 O -0.480 6.480 22 N -0.240 5.240 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.070 4.769 3.113 5.695 hybrid contribution 0.022 -0.480 -0.536 0.720 sum 0.092 4.289 2.576 5.004 Atomic orbital electron populations 1.20316 0.84615 1.03955 1.03497 1.23673 1.00131 0.83070 0.96255 1.77390 0.99565 1.26875 1.29579 1.84843 1.11341 1.04156 1.66048 1.29989 0.93604 0.99910 0.90669 1.17693 0.92248 0.90984 0.93934 1.19732 1.08759 1.23504 0.99718 1.20011 0.91925 0.87385 0.79894 1.19212 1.03858 1.19253 1.00993 0.86313 1.26366 0.99260 0.96201 0.93995 1.69556 1.30236 1.32696 1.04835 0.85975 0.78866 0.80367 0.79821 1.17861 1.19637 1.17742 1.84381 1.32473 1.50462 1.34893 1.43053 1.22555 1.44801 1.18319 0.71869 1.17742 0.84991 0.84445 0.81920 1.90780 1.26289 1.52443 1.78495 1.67308 1.05911 1.28988 1.21763 0.89953 0.90158 0.89485 0.89519 0.89558 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 36.01 0.38 -0.50 15 2 C 0.26 4.93 7.56 -159.05 -1.20 3.73 15 3 N -0.50 -9.77 12.17 29.44 0.36 -9.41 15 4 S 0.19 3.66 23.81 -107.50 -2.56 1.10 15 5 C 0.14 3.00 7.04 -12.66 -0.09 2.91 15 6 C 0.09 1.90 6.30 -29.03 -0.18 1.72 15 7 C -0.51 -12.05 5.71 -102.81 -0.59 -12.64 15 8 C 0.26 6.25 6.89 -38.24 -0.26 5.98 15 9 C -0.40 -8.82 9.19 -37.91 -0.35 -9.17 15 10 H 0.12 2.34 7.41 -52.49 -0.39 1.95 15 11 C 0.07 1.41 5.50 -17.28 -0.10 1.32 15 12 N -0.75 -16.38 12.06 55.57 0.67 -15.71 15 13 Si 0.93 15.20 29.56 -169.99 -5.03 10.18 15 14 H -0.25 -4.07 7.11 56.52 0.40 -3.67 15 15 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 16 H -0.25 -4.14 7.11 56.52 0.40 -3.74 15 17 O -0.01 -0.28 9.56 15.43 0.15 -0.13 15 18 N -0.60 -13.54 6.72 29.14 0.20 -13.34 15 19 H 0.43 8.28 8.96 -40.82 -0.37 7.91 15 20 C 0.50 12.80 8.44 -14.98 -0.13 12.67 15 21 O -0.59 -16.55 18.08 4.88 0.09 -16.46 15 22 N -0.52 -11.07 10.56 -11.34 -0.12 -11.19 15 23 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 27 H 0.09 1.51 7.62 -51.93 -0.40 1.12 15 28 H 0.30 5.78 8.29 -40.82 -0.34 5.45 15 LS Contribution 275.75 15.07 4.16 4.16 Total: -1.00 -29.91 275.75 -6.59 -36.49 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -1.98 Total: 8.30 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.52 Total: 6.02 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 1.10 Total: -49.65 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.24 Total: -16.59 kcal Atomic # 14 Polarization: 15.20 SS G_CDS: -5.03 Total: 10.18 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.56 Total: 1.10 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.91 -6.59 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115222.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.786 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds